Wall clock time and date at job start Sat Apr 11 2020 05:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00215 * 2 1 4 4 H 1.48503 * 109.46940 * 263.60418 * 3 2 1 5 5 H 1.48499 * 109.46975 * 23.59683 * 3 2 1 6 6 H 1.48495 * 109.47238 * 143.60056 * 3 2 1 7 7 C 1.37876 * 120.00082 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00224 * 352.37896 * 7 2 1 9 9 C 1.50706 * 120.00218 * 172.37436 * 7 2 1 10 10 H 1.08998 * 109.46952 * 354.38209 * 9 7 2 11 11 C 1.50697 * 109.47089 * 234.38325 * 9 7 2 12 12 O 1.21282 * 119.99988 * 261.82186 * 11 9 7 13 13 N 1.34778 * 120.00173 * 81.82795 * 11 9 7 14 14 N 1.40097 * 119.99666 * 179.97438 * 13 11 9 15 15 C 1.34778 * 119.99666 * 179.97438 * 14 13 11 16 16 O 1.21591 * 119.99889 * 359.97438 * 15 14 13 17 17 C 1.47539 * 120.00130 * 179.97438 * 15 14 13 18 18 C 1.39706 * 120.19062 * 0.27036 * 17 15 14 19 19 C 1.37783 * 119.90605 * 180.29523 * 18 17 15 20 20 C 1.38543 * 120.30364 * 359.70791 * 19 18 17 21 21 C 1.38060 * 120.38840 * 0.02562 * 20 19 18 22 22 C 1.38708 * 120.08230 * 359.97438 * 21 20 19 23 23 O 1.35663 * 120.14980 * 180.02562 * 22 21 20 24 24 C 1.50700 * 109.47090 * 114.38094 * 9 7 2 25 25 C 1.38237 * 119.99886 * 52.61349 * 24 9 7 26 26 C 1.38237 * 119.99725 * 179.80720 * 25 24 9 27 27 C 1.38233 * 120.00309 * 0.40557 * 26 25 24 28 28 C 1.38237 * 119.99633 * 359.85138 * 27 26 25 29 29 C 1.38232 * 120.00348 * 359.96029 * 28 27 26 30 30 H 0.96996 * 119.99828 * 0.02562 * 1 2 3 31 31 H 0.96994 * 119.99837 * 359.97438 * 13 11 9 32 32 H 0.96994 * 120.00496 * 359.97438 * 14 13 11 33 33 H 1.08004 * 120.04574 * 0.02562 * 18 17 15 34 34 H 1.08005 * 119.85165 * 179.72444 * 19 18 17 35 35 H 1.07998 * 119.81411 * 180.02562 * 20 19 18 36 36 H 1.07995 * 119.95829 * 180.02562 * 21 20 19 37 37 H 0.96699 * 113.99824 * 89.99929 * 23 22 21 38 38 H 1.08004 * 120.00152 * 0.02562 * 25 24 9 39 39 H 1.08000 * 119.99598 * 180.23757 * 26 25 24 40 40 H 1.07994 * 119.99874 * 179.83377 * 27 26 25 41 41 H 1.07999 * 119.99551 * 179.97438 * 28 27 26 42 42 H 1.07999 * 120.00362 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6318 1.9684 -1.3914 5 1 1.3856 2.6879 0.5604 6 1 3.4726 1.4829 0.8308 7 6 2.0045 -1.1940 -0.0005 8 1 1.4717 -2.1253 0.1231 9 6 3.5016 -1.1998 -0.1737 10 1 3.8470 -0.1873 -0.3826 11 6 3.8710 -2.1034 -1.3217 12 8 4.2369 -3.2394 -1.1059 13 7 3.7948 -1.6492 -2.5884 14 7 4.1388 -2.4892 -3.6556 15 6 4.0622 -2.0352 -4.9222 16 8 3.6941 -0.8967 -5.1388 17 6 4.4249 -2.9195 -6.0461 18 6 4.8429 -4.2301 -5.8023 19 6 5.1861 -5.0490 -6.8558 20 6 5.1130 -4.5808 -8.1577 21 6 4.6962 -3.2897 -8.4132 22 6 4.3469 -2.4515 -7.3647 23 8 3.9367 -1.1827 -7.6142 24 6 4.1515 -1.7016 1.0899 25 6 3.7527 -2.9048 1.6414 26 6 4.3517 -3.3671 2.7984 27 6 5.3436 -2.6222 3.4084 28 6 5.7386 -1.4164 2.8597 29 6 5.1424 -0.9560 1.7007 30 1 -0.4850 0.8400 -0.0004 31 1 3.5019 -0.7408 -2.7611 32 1 4.4321 -3.3975 -3.4829 33 1 4.9012 -4.5994 -4.7890 34 1 5.5134 -6.0606 -6.6660 35 1 5.3835 -5.2296 -8.9776 36 1 4.6414 -2.9321 -9.4308 37 1 2.9820 -1.0956 -7.7406 38 1 2.9756 -3.4854 1.1665 39 1 4.0428 -4.3089 3.2271 40 1 5.8096 -2.9821 4.3137 41 1 6.5133 -0.8342 3.3366 42 1 5.4508 -0.0138 1.2723 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160373108.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:25 Heat of formation + Delta-G solvation = -48.036757 kcal Electronic energy + Delta-G solvation = -28370.623822 eV Core-core repulsion = 24281.221264 eV Total energy + Delta-G solvation = -4089.402558 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.80881 -40.97747 -39.85725 -39.14983 -37.71664 -36.34695 -35.60660 -33.62451 -33.17595 -31.62819 -31.31283 -30.77362 -29.33940 -25.84142 -24.95095 -23.61125 -23.37180 -22.87323 -22.38848 -21.23951 -19.59690 -19.26210 -18.86595 -18.77247 -17.59212 -17.46080 -16.82652 -16.67706 -16.44745 -16.28145 -15.97597 -15.88392 -15.57796 -15.33962 -15.10679 -14.89539 -14.67071 -14.52140 -14.14190 -13.79097 -13.47485 -13.37297 -13.19708 -13.00138 -12.79957 -12.69188 -12.43267 -12.09961 -11.95031 -11.86750 -11.75705 -11.51646 -11.19820 -11.01391 -10.74617 -10.16407 -9.75881 -9.64088 -9.44781 -9.38412 -8.42774 -6.51512 -0.32276 0.23137 0.52962 0.67921 0.88678 1.31858 1.35724 1.42262 1.48816 1.82997 2.24673 2.66210 2.85770 2.99288 3.14151 3.20944 3.54377 3.78021 4.01075 4.06880 4.12636 4.19744 4.31007 4.33727 4.38461 4.41222 4.41908 4.66731 4.81843 4.84684 4.88465 5.14382 5.15749 5.27654 5.31483 5.33266 5.39921 5.55824 5.65907 5.70430 5.75005 5.76802 5.91612 6.14190 6.29732 6.45657 6.52261 6.74704 6.79959 7.12518 7.31555 8.71986 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012345 B = 0.003242 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.610264 B = 8634.806977 C =10118.678502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.036 3.964 3 Si 0.920 3.080 4 H -0.255 1.255 5 H -0.281 1.281 6 H -0.236 1.236 7 C -0.510 4.510 8 H 0.039 0.961 9 C 0.049 3.951 10 H 0.074 0.926 11 C 0.533 3.467 12 O -0.572 6.572 13 N -0.526 5.526 14 N -0.515 5.515 15 C 0.551 3.449 16 O -0.561 6.561 17 C -0.183 4.183 18 C -0.075 4.075 19 C -0.132 4.132 20 C -0.061 4.061 21 C -0.156 4.156 22 C 0.153 3.847 23 O -0.498 6.498 24 C -0.064 4.064 25 C -0.097 4.097 26 C -0.134 4.134 27 C -0.130 4.130 28 C -0.124 4.124 29 C -0.144 4.144 30 H 0.273 0.727 31 H 0.429 0.571 32 H 0.433 0.567 33 H 0.138 0.862 34 H 0.165 0.835 35 H 0.171 0.829 36 H 0.158 0.842 37 H 0.407 0.593 38 H 0.091 0.909 39 H 0.135 0.865 40 H 0.151 0.849 41 H 0.150 0.850 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.158 -8.236 -11.700 19.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.166 4.166 3 Si 0.742 3.258 4 H -0.180 1.180 5 H -0.207 1.207 6 H -0.159 1.159 7 C -0.548 4.548 8 H 0.058 0.942 9 C 0.026 3.974 10 H 0.092 0.908 11 C 0.322 3.678 12 O -0.450 6.450 13 N -0.273 5.273 14 N -0.263 5.263 15 C 0.340 3.660 16 O -0.440 6.440 17 C -0.188 4.188 18 C -0.094 4.094 19 C -0.149 4.149 20 C -0.079 4.079 21 C -0.174 4.174 22 C 0.106 3.894 23 O -0.311 6.311 24 C -0.065 4.065 25 C -0.116 4.116 26 C -0.152 4.152 27 C -0.148 4.148 28 C -0.142 4.142 29 C -0.162 4.162 30 H 0.082 0.918 31 H 0.271 0.729 32 H 0.277 0.723 33 H 0.155 0.845 34 H 0.182 0.818 35 H 0.189 0.811 36 H 0.176 0.824 37 H 0.267 0.733 38 H 0.109 0.891 39 H 0.153 0.847 40 H 0.169 0.831 41 H 0.168 0.832 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 13.551 -7.983 -11.637 19.565 hybrid contribution -1.250 0.851 0.064 1.514 sum 12.301 -7.132 -11.573 18.333 Atomic orbital electron populations 1.69988 1.08178 1.28822 1.49122 1.25837 0.95444 1.02481 0.92822 0.86118 0.80266 0.78850 0.80566 1.17951 1.20656 1.15912 1.20473 0.88310 0.94121 1.51870 0.94246 1.18135 0.96382 0.95137 0.87755 0.90839 1.21904 0.74311 0.89280 0.82292 1.90554 1.49260 1.20482 1.84674 1.45186 1.69363 1.13839 0.98901 1.44855 1.68029 1.14231 0.99202 1.18794 0.78070 0.87698 0.81412 1.90801 1.48662 1.20059 1.84443 1.20104 1.10883 0.95681 0.92131 1.21508 0.95483 0.91038 1.01389 1.21523 1.00112 1.01408 0.91879 1.21748 0.93536 0.94606 0.98053 1.21723 1.02308 0.94061 0.99299 1.18804 0.95814 0.84332 0.90431 1.84697 1.29983 1.23603 1.92863 1.19877 0.94879 0.95088 0.96657 1.20874 0.98823 0.95824 0.96062 1.21362 0.97576 1.00817 0.95432 1.21389 0.97584 0.95064 1.00779 1.21363 1.00424 0.96960 0.95461 1.21271 0.96868 1.00253 0.97838 0.91751 0.72923 0.72293 0.84467 0.81766 0.81134 0.82440 0.73310 0.89053 0.84689 0.83087 0.83229 0.85748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.92 13.96 21.45 0.30 -54.63 16 2 C 0.04 1.95 5.47 84.66 0.46 2.41 16 3 Si 0.92 40.65 26.84 68.60 1.84 42.49 16 4 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 6 H -0.24 -9.52 6.96 99.48 0.69 -8.82 16 7 C -0.51 -27.96 8.24 25.60 0.21 -27.75 16 8 H 0.04 2.46 7.72 -2.91 -0.02 2.44 16 9 C 0.05 2.27 2.20 -13.03 -0.03 2.24 16 10 H 0.07 3.18 4.73 -2.39 -0.01 3.17 16 11 C 0.53 23.93 7.05 87.66 0.62 24.55 16 12 O -0.57 -26.72 15.04 -3.04 -0.05 -26.77 16 13 N -0.53 -21.60 6.26 -173.53 -1.09 -22.68 16 14 N -0.52 -18.06 6.21 -175.81 -1.09 -19.16 16 15 C 0.55 18.90 7.88 86.70 0.68 19.59 16 16 O -0.56 -22.87 15.00 16.92 0.25 -22.62 16 17 C -0.18 -4.77 5.89 -20.01 -0.12 -4.89 16 18 C -0.08 -1.45 9.53 22.52 0.21 -1.23 16 19 C -0.13 -1.67 10.02 22.23 0.22 -1.45 16 20 C -0.06 -0.67 10.03 22.30 0.22 -0.44 16 21 C -0.16 -2.38 9.98 22.34 0.22 -2.16 16 22 C 0.15 3.58 6.72 22.84 0.15 3.73 16 23 O -0.50 -12.94 11.58 -68.88 -0.80 -13.73 16 24 C -0.06 -2.79 4.52 -19.86 -0.09 -2.88 16 25 C -0.10 -4.20 8.04 22.27 0.18 -4.03 16 26 C -0.13 -4.63 10.05 22.27 0.22 -4.41 16 27 C -0.13 -3.82 10.05 22.27 0.22 -3.60 16 28 C -0.12 -3.76 10.05 22.27 0.22 -3.54 16 29 C -0.14 -5.32 9.67 22.27 0.22 -5.10 16 30 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 31 H 0.43 17.91 8.00 -213.33 -1.71 16.21 16 32 H 0.43 13.43 6.03 -213.33 -1.29 12.14 16 33 H 0.14 2.38 6.40 -2.91 -0.02 2.36 16 34 H 0.16 1.07 8.06 -2.91 -0.02 1.04 16 35 H 0.17 0.58 8.06 -2.91 -0.02 0.55 16 36 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 37 H 0.41 7.80 9.06 -74.06 -0.67 7.13 16 38 H 0.09 4.36 7.46 -2.91 -0.02 4.34 16 39 H 0.14 3.90 8.06 -2.91 -0.02 3.87 16 40 H 0.15 3.20 8.06 -2.91 -0.02 3.17 16 41 H 0.15 3.36 8.06 -2.91 -0.02 3.33 16 42 H 0.12 4.15 7.96 -2.91 -0.02 4.12 16 Total: -1.00 -77.27 365.46 0.65 -76.62 By element: Atomic # 1 Polarization: 51.99 SS G_CDS: -2.57 Total: 49.42 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: 3.84 Total: -8.94 kcal Atomic # 7 Polarization: -94.58 SS G_CDS: -1.88 Total: -96.46 kcal Atomic # 8 Polarization: -62.54 SS G_CDS: -0.59 Total: -63.12 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 1.84 Total: 42.49 kcal Total: -77.27 0.65 -76.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160373108.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.581 kcal (2) G-P(sol) polarization free energy of solvation -77.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds