Wall clock time and date at job start Sat Apr 11 2020 05:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86799 * 119.99948 * 2 1 4 4 H 1.48501 * 109.47326 * 274.96609 * 3 2 1 5 5 H 1.48501 * 109.47191 * 34.96704 * 3 2 1 6 6 H 1.48496 * 109.47043 * 154.96734 * 3 2 1 7 7 C 1.39929 * 119.99666 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99663 * 196.79125 * 7 2 1 9 9 C 1.41406 * 120.00351 * 16.79054 * 7 2 1 10 10 C 1.40773 * 120.20613 * 25.16375 * 9 7 2 11 11 C 1.37651 * 119.88227 * 180.02562 * 10 9 7 12 12 C 1.38532 * 120.32025 * 0.02562 * 11 10 9 13 13 C 1.39247 * 120.42963 * 359.95969 * 12 11 10 14 14 N 1.39942 * 119.94503 * 180.02562 * 13 12 11 15 15 C 1.34777 * 119.99930 * 145.79054 * 14 13 12 16 16 O 1.21289 * 119.99840 * 354.88959 * 15 14 13 17 17 C 1.50693 * 119.99863 * 174.88749 * 15 14 13 18 18 N 1.46507 * 109.47049 * 180.02562 * 17 15 14 19 19 C 1.34776 * 119.99883 * 179.97438 * 18 17 15 20 20 O 1.21592 * 120.00266 * 0.02562 * 19 18 17 21 21 C 1.47597 * 119.99917 * 179.97438 * 19 18 17 22 22 C 1.39739 * 120.08796 * 179.97438 * 21 19 18 23 23 C 1.37704 * 119.91223 * 180.02562 * 22 21 19 24 24 C 1.39000 * 120.08443 * 0.03102 * 23 22 21 25 25 O 1.35709 * 119.90663 * 179.97438 * 24 23 22 26 26 C 1.38996 * 120.18068 * 0.24507 * 24 23 22 27 27 C 1.37709 * 120.08401 * 359.45376 * 26 24 23 28 28 C 1.38279 * 120.10756 * 0.27257 * 13 12 11 29 29 H 0.97001 * 120.00078 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.06241 * 0.02562 * 10 9 7 31 31 H 1.08001 * 119.84118 * 180.02562 * 11 10 9 32 32 H 1.08000 * 119.78342 * 179.97438 * 12 11 10 33 33 H 0.96997 * 119.99958 * 325.78783 * 14 13 12 34 34 H 1.08997 * 109.47130 * 59.99930 * 17 15 14 35 35 H 1.08997 * 109.47263 * 299.99879 * 17 15 14 36 36 H 0.96993 * 119.99895 * 0.02562 * 18 17 15 37 37 H 1.07996 * 120.04248 * 0.02562 * 22 21 19 38 38 H 1.07992 * 119.95671 * 180.02562 * 23 22 21 39 39 H 0.96703 * 114.00469 * 90.00076 * 25 24 23 40 40 H 1.07993 * 119.95822 * 179.72824 * 26 24 23 41 41 H 1.07999 * 120.04075 * 180.27420 * 27 26 24 42 42 H 1.07994 * 120.16552 * 179.73060 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3848 2.1071 -1.3948 5 1 1.4962 2.6201 0.8024 6 1 3.5883 1.4121 0.5924 7 6 2.0079 -1.2119 -0.0005 8 1 3.0534 -1.2319 0.2697 9 6 1.3461 -2.4102 -0.3548 10 6 0.2107 -2.3731 -1.1863 11 6 -0.4287 -3.5437 -1.5265 12 6 0.0393 -4.7590 -1.0542 13 6 1.1613 -4.8110 -0.2312 14 7 1.6256 -6.0443 0.2397 15 6 2.9473 -6.2466 0.4093 16 8 3.7400 -5.3947 0.0672 17 6 3.4401 -7.5311 1.0242 18 7 4.9030 -7.5067 1.0994 19 6 5.5687 -8.5574 1.6184 20 8 4.9552 -9.5258 2.0238 21 6 7.0426 -8.5331 1.6936 22 6 7.7346 -9.6213 2.2318 23 6 9.1096 -9.5946 2.3008 24 6 9.8092 -8.4868 1.8364 25 8 11.1642 -8.4641 1.9065 26 6 9.1242 -7.4000 1.3056 27 6 7.7495 -7.4217 1.2275 28 6 1.8144 -3.6456 0.1256 29 1 -0.4850 0.8400 0.0004 30 1 -0.1580 -1.4280 -1.5566 31 1 -1.2994 -3.5145 -2.1648 32 1 -0.4693 -5.6721 -1.3263 33 1 0.9963 -6.7535 0.4441 34 1 3.1214 -8.3734 0.4102 35 1 3.0268 -7.6357 2.0273 36 1 5.3924 -6.7341 0.7763 37 1 7.1917 -10.4821 2.5933 38 1 9.6452 -10.4353 2.7162 39 1 11.6047 -8.8240 1.1245 40 1 9.6711 -6.5394 0.9499 41 1 7.2183 -6.5787 0.8108 42 1 2.6821 -3.6845 0.7674 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182972237.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:31 Heat of formation + Delta-G solvation = -63.768631 kcal Electronic energy + Delta-G solvation = -27132.865511 eV Core-core repulsion = 23042.780767 eV Total energy + Delta-G solvation = -4090.084743 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.69596 -39.93059 -39.09818 -37.32440 -36.80483 -34.85080 -34.42591 -33.13832 -31.48591 -30.76188 -29.88610 -28.99159 -27.00398 -25.35078 -23.81680 -23.07574 -21.74462 -20.94600 -20.74427 -19.85426 -18.92415 -18.49328 -17.78238 -16.63539 -16.37762 -15.97378 -15.79145 -15.71481 -15.31923 -15.20724 -14.88643 -14.72675 -14.51530 -14.16187 -13.87598 -13.39710 -13.18877 -12.96764 -12.89501 -12.72210 -12.40865 -12.34447 -12.13595 -11.71743 -11.26628 -11.17987 -10.99099 -10.89453 -10.50052 -10.30840 -10.25564 -9.75218 -9.56698 -9.47154 -9.40781 -9.15493 -9.09531 -9.02884 -7.51573 -7.01352 -6.76646 -4.39129 0.37575 0.93858 2.39398 2.50045 2.74008 2.77504 3.06839 3.11616 3.13556 3.25443 3.41768 3.55936 3.74065 3.92854 4.42075 4.46984 4.53708 4.59400 4.79582 4.88855 5.06794 5.18829 5.21792 5.30867 5.57390 5.65438 5.78291 5.92882 5.96303 6.06040 6.18515 6.29330 6.32646 6.61466 6.92218 6.96827 7.00529 7.17264 7.19594 7.27883 7.44890 7.64039 7.89089 7.94382 8.02076 8.07234 8.15422 8.47635 8.62857 8.88020 8.92221 10.16974 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012852 B = 0.002234 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.169222 B =12530.759933 C =14430.668059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.075 3.925 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.261 1.261 7 C -0.458 4.458 8 H 0.079 0.921 9 C 0.119 3.881 10 C -0.169 4.169 11 C -0.092 4.092 12 C -0.259 4.259 13 C 0.148 3.852 14 N -0.660 5.660 15 C 0.500 3.500 16 O -0.517 6.517 17 C 0.101 3.899 18 N -0.711 5.711 19 C 0.563 3.437 20 O -0.541 6.541 21 C -0.144 4.144 22 C -0.042 4.042 23 C -0.156 4.156 24 C 0.131 3.869 25 O -0.499 6.499 26 C -0.152 4.152 27 C -0.065 4.065 28 C -0.210 4.210 29 H 0.280 0.720 30 H 0.120 0.880 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.402 0.598 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.413 0.587 37 H 0.142 0.858 38 H 0.136 0.864 39 H 0.395 0.605 40 H 0.137 0.863 41 H 0.136 0.864 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.274 -15.400 1.625 20.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.142 4.142 3 Si 0.734 3.266 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.185 1.185 7 C -0.487 4.487 8 H 0.097 0.903 9 C 0.116 3.884 10 C -0.189 4.189 11 C -0.111 4.111 12 C -0.281 4.281 13 C 0.057 3.943 14 N -0.304 5.304 15 C 0.285 3.715 16 O -0.392 6.392 17 C -0.026 4.026 18 N -0.366 5.366 19 C 0.350 3.650 20 O -0.419 6.419 21 C -0.147 4.147 22 C -0.060 4.060 23 C -0.175 4.175 24 C 0.086 3.914 25 O -0.310 6.310 26 C -0.170 4.170 27 C -0.084 4.084 28 C -0.231 4.231 29 H 0.091 0.909 30 H 0.137 0.863 31 H 0.111 0.889 32 H 0.108 0.892 33 H 0.236 0.764 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.252 0.748 37 H 0.160 0.840 38 H 0.154 0.846 39 H 0.252 0.748 40 H 0.155 0.845 41 H 0.154 0.846 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 13.107 -15.053 2.251 20.086 hybrid contribution 0.232 0.610 -0.475 0.807 sum 13.338 -14.443 1.776 19.740 Atomic orbital electron populations 1.69823 1.07543 1.29182 1.35407 1.25911 0.94756 1.01331 0.92232 0.86280 0.80635 0.80570 0.79150 1.19320 1.20292 1.18530 1.19591 0.97793 0.90925 1.40396 0.90326 1.17495 0.90927 0.91636 0.88359 1.21373 0.99266 0.96912 1.01366 1.20477 0.98541 0.92675 0.99439 1.20045 1.02271 0.97001 1.08750 1.17415 0.96345 0.83068 0.97492 1.43318 1.06626 1.15481 1.64952 1.20410 0.83160 0.88453 0.79448 1.90747 1.54400 1.45090 1.48977 1.21086 0.81706 0.96737 1.03093 1.45620 1.06585 1.21013 1.63380 1.18116 0.87155 0.82306 0.77397 1.90784 1.69394 1.33446 1.48306 1.19917 0.92736 0.96737 1.05296 1.21153 0.93242 0.97396 0.94257 1.21415 0.94303 0.98654 1.03112 1.18756 0.83223 0.93135 0.96251 1.84761 1.15205 1.85790 1.45208 1.21407 0.94453 0.99540 1.01643 1.21335 0.93991 0.97021 0.96029 1.20946 1.04353 0.90972 1.06848 0.90885 0.86260 0.88946 0.89170 0.76366 0.88223 0.88057 0.74759 0.84049 0.84628 0.74794 0.84492 0.84597 0.87655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.34 10.94 55.55 0.61 -19.73 16 2 C 0.08 1.89 5.16 -17.35 -0.09 1.80 16 3 Si 0.91 18.74 29.59 -169.99 -5.03 13.71 16 4 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.26 -5.37 7.11 56.52 0.40 -4.96 16 7 C -0.46 -12.26 9.05 -37.74 -0.34 -12.60 16 8 H 0.08 2.07 7.90 -52.48 -0.41 1.66 16 9 C 0.12 3.19 5.57 -106.85 -0.59 2.59 16 10 C -0.17 -4.35 8.69 -38.84 -0.34 -4.69 16 11 C -0.09 -2.10 10.02 -39.69 -0.40 -2.50 16 12 C -0.26 -5.51 9.97 -39.10 -0.39 -5.90 16 13 C 0.15 3.20 6.25 -83.76 -0.52 2.68 16 14 N -0.66 -10.83 5.34 -9.91 -0.05 -10.88 16 15 C 0.50 7.98 7.63 -10.99 -0.08 7.90 16 16 O -0.52 -10.20 13.42 5.55 0.07 -10.13 16 17 C 0.10 1.22 6.16 -5.19 -0.03 1.19 16 18 N -0.71 -8.71 5.48 -62.51 -0.34 -9.05 16 19 C 0.56 7.12 7.76 -12.44 -0.10 7.03 16 20 O -0.54 -8.16 16.34 5.28 0.09 -8.07 16 21 C -0.14 -1.54 5.87 -104.96 -0.62 -2.15 16 22 C -0.04 -0.40 9.58 -39.22 -0.38 -0.77 16 23 C -0.16 -1.26 9.97 -39.49 -0.39 -1.66 16 24 C 0.13 1.08 6.71 -39.02 -0.26 0.82 16 25 O -0.50 -3.48 13.49 -18.83 -0.25 -3.73 16 26 C -0.15 -1.28 9.97 -39.49 -0.39 -1.68 16 27 C -0.06 -0.61 9.53 -39.22 -0.37 -0.98 16 28 C -0.21 -5.23 8.39 -38.68 -0.32 -5.56 16 29 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 30 H 0.12 3.15 6.17 -52.49 -0.32 2.83 16 31 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 32 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 33 H 0.40 4.97 8.82 -40.82 -0.36 4.61 16 34 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.41 4.98 5.46 -40.82 -0.22 4.75 16 37 H 0.14 1.29 7.64 -52.49 -0.40 0.88 16 38 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 39 H 0.39 0.79 9.06 45.56 0.41 1.20 16 40 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 41 H 0.14 1.15 6.39 -52.49 -0.34 0.82 16 42 H 0.11 2.68 6.48 -52.49 -0.34 2.34 16 LS Contribution 366.92 15.07 5.53 5.53 Total: -1.00 -33.22 366.92 -8.66 -41.88 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: -3.66 Total: 14.95 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: -5.63 Total: -14.48 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 0.21 Total: -39.66 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.09 Total: -21.93 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.22 -8.66 -41.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182972237.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.887 kcal (2) G-P(sol) polarization free energy of solvation -33.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds