Wall clock time and date at job start Sat Apr 11 2020 05:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86799 * 119.99948 * 2 1 4 4 H 1.48501 * 109.47326 * 274.96609 * 3 2 1 5 5 H 1.48501 * 109.47191 * 34.96704 * 3 2 1 6 6 H 1.48496 * 109.47043 * 154.96734 * 3 2 1 7 7 C 1.39929 * 119.99666 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99663 * 196.79125 * 7 2 1 9 9 C 1.41406 * 120.00351 * 16.79054 * 7 2 1 10 10 C 1.40773 * 120.20613 * 25.16375 * 9 7 2 11 11 C 1.37651 * 119.88227 * 180.02562 * 10 9 7 12 12 C 1.38532 * 120.32025 * 0.02562 * 11 10 9 13 13 C 1.39247 * 120.42963 * 359.95969 * 12 11 10 14 14 N 1.39942 * 119.94503 * 180.02562 * 13 12 11 15 15 C 1.34777 * 119.99930 * 145.79054 * 14 13 12 16 16 O 1.21289 * 119.99840 * 354.88959 * 15 14 13 17 17 C 1.50693 * 119.99863 * 174.88749 * 15 14 13 18 18 N 1.46507 * 109.47049 * 180.02562 * 17 15 14 19 19 C 1.34776 * 119.99883 * 179.97438 * 18 17 15 20 20 O 1.21592 * 120.00266 * 0.02562 * 19 18 17 21 21 C 1.47597 * 119.99917 * 179.97438 * 19 18 17 22 22 C 1.39739 * 120.08796 * 179.97438 * 21 19 18 23 23 C 1.37704 * 119.91223 * 180.02562 * 22 21 19 24 24 C 1.39000 * 120.08443 * 0.03102 * 23 22 21 25 25 O 1.35709 * 119.90663 * 179.97438 * 24 23 22 26 26 C 1.38996 * 120.18068 * 0.24507 * 24 23 22 27 27 C 1.37709 * 120.08401 * 359.45376 * 26 24 23 28 28 C 1.38279 * 120.10756 * 0.27257 * 13 12 11 29 29 H 0.97001 * 120.00078 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.06241 * 0.02562 * 10 9 7 31 31 H 1.08001 * 119.84118 * 180.02562 * 11 10 9 32 32 H 1.08000 * 119.78342 * 179.97438 * 12 11 10 33 33 H 0.96997 * 119.99958 * 325.78783 * 14 13 12 34 34 H 1.08997 * 109.47130 * 59.99930 * 17 15 14 35 35 H 1.08997 * 109.47263 * 299.99879 * 17 15 14 36 36 H 0.96993 * 119.99895 * 0.02562 * 18 17 15 37 37 H 1.07996 * 120.04248 * 0.02562 * 22 21 19 38 38 H 1.07992 * 119.95671 * 180.02562 * 23 22 21 39 39 H 0.96703 * 114.00469 * 90.00076 * 25 24 23 40 40 H 1.07993 * 119.95822 * 179.72824 * 26 24 23 41 41 H 1.07999 * 120.04075 * 180.27420 * 27 26 24 42 42 H 1.07994 * 120.16552 * 179.73060 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3848 2.1071 -1.3948 5 1 1.4962 2.6201 0.8024 6 1 3.5883 1.4121 0.5924 7 6 2.0079 -1.2119 -0.0005 8 1 3.0534 -1.2319 0.2697 9 6 1.3461 -2.4102 -0.3548 10 6 0.2107 -2.3731 -1.1863 11 6 -0.4287 -3.5437 -1.5265 12 6 0.0393 -4.7590 -1.0542 13 6 1.1613 -4.8110 -0.2312 14 7 1.6256 -6.0443 0.2397 15 6 2.9473 -6.2466 0.4093 16 8 3.7400 -5.3947 0.0672 17 6 3.4401 -7.5311 1.0242 18 7 4.9030 -7.5067 1.0994 19 6 5.5687 -8.5574 1.6184 20 8 4.9552 -9.5258 2.0238 21 6 7.0426 -8.5331 1.6936 22 6 7.7346 -9.6213 2.2318 23 6 9.1096 -9.5946 2.3008 24 6 9.8092 -8.4868 1.8364 25 8 11.1642 -8.4641 1.9065 26 6 9.1242 -7.4000 1.3056 27 6 7.7495 -7.4217 1.2275 28 6 1.8144 -3.6456 0.1256 29 1 -0.4850 0.8400 0.0004 30 1 -0.1580 -1.4280 -1.5566 31 1 -1.2994 -3.5145 -2.1648 32 1 -0.4693 -5.6721 -1.3263 33 1 0.9963 -6.7535 0.4441 34 1 3.1214 -8.3734 0.4102 35 1 3.0268 -7.6357 2.0273 36 1 5.3924 -6.7341 0.7763 37 1 7.1917 -10.4821 2.5933 38 1 9.6452 -10.4353 2.7162 39 1 11.6047 -8.8240 1.1245 40 1 9.6711 -6.5394 0.9499 41 1 7.2183 -6.5787 0.8108 42 1 2.6821 -3.6845 0.7674 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182972237.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:30 Heat of formation + Delta-G solvation = -87.678948 kcal Electronic energy + Delta-G solvation = -27133.902340 eV Core-core repulsion = 23042.780767 eV Total energy + Delta-G solvation = -4091.121572 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.71219 -41.07454 -40.00512 -39.00583 -37.47399 -36.34266 -35.65367 -34.88094 -32.18819 -31.76251 -31.58889 -30.40798 -28.27666 -27.24293 -24.65672 -23.80761 -23.23831 -22.71500 -21.66074 -21.34267 -19.77850 -19.48861 -19.26145 -17.75697 -17.63789 -17.26835 -17.02749 -16.77392 -16.45577 -16.42101 -16.06792 -15.96790 -15.84237 -15.13984 -15.00464 -14.72035 -14.56341 -14.24688 -14.10198 -13.79829 -13.61464 -13.52031 -13.10357 -13.02604 -12.99793 -12.92314 -12.78931 -12.18865 -12.01144 -11.54067 -11.49372 -11.26071 -11.21835 -10.94500 -10.75685 -10.39483 -10.13553 -9.73434 -9.40636 -8.78381 -8.61987 -6.37450 -0.34730 0.27355 0.80207 0.98544 1.36623 1.46439 1.50115 1.63506 1.66498 1.72271 2.20364 2.36159 2.68599 2.72825 3.16646 3.49490 3.66472 3.74245 3.80804 3.89873 4.24261 4.26452 4.28381 4.39582 4.46489 4.62797 4.67641 4.93649 4.99483 5.06629 5.08899 5.10887 5.12904 5.21979 5.24253 5.30899 5.32231 5.67148 5.72076 5.83703 6.07541 6.09748 6.30453 6.32789 6.52159 6.67423 6.79528 6.92849 6.98355 6.99763 7.18164 8.32558 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012852 B = 0.002234 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.169222 B =12530.759933 C =14430.668059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.037 3.963 3 Si 0.981 3.019 4 H -0.260 1.260 5 H -0.264 1.264 6 H -0.263 1.263 7 C -0.500 4.500 8 H 0.065 0.935 9 C 0.087 3.913 10 C -0.197 4.197 11 C -0.092 4.092 12 C -0.248 4.248 13 C 0.157 3.843 14 N -0.650 5.650 15 C 0.502 3.498 16 O -0.556 6.556 17 C 0.112 3.888 18 N -0.713 5.713 19 C 0.565 3.435 20 O -0.569 6.569 21 C -0.165 4.165 22 C -0.046 4.046 23 C -0.155 4.155 24 C 0.139 3.861 25 O -0.506 6.506 26 C -0.159 4.159 27 C -0.068 4.068 28 C -0.234 4.234 29 H 0.289 0.711 30 H 0.103 0.897 31 H 0.122 0.878 32 H 0.133 0.867 33 H 0.425 0.575 34 H 0.125 0.875 35 H 0.118 0.882 36 H 0.413 0.587 37 H 0.142 0.858 38 H 0.157 0.843 39 H 0.418 0.582 40 H 0.151 0.849 41 H 0.138 0.862 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.835 -16.895 1.479 21.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.178 4.178 3 Si 0.801 3.199 4 H -0.185 1.185 5 H -0.188 1.188 6 H -0.187 1.187 7 C -0.529 4.529 8 H 0.083 0.917 9 C 0.085 3.915 10 C -0.217 4.217 11 C -0.111 4.111 12 C -0.269 4.269 13 C 0.064 3.936 14 N -0.296 5.296 15 C 0.290 3.710 16 O -0.434 6.434 17 C -0.015 4.015 18 N -0.367 5.367 19 C 0.354 3.646 20 O -0.450 6.450 21 C -0.168 4.168 22 C -0.065 4.065 23 C -0.174 4.174 24 C 0.093 3.907 25 O -0.321 6.321 26 C -0.177 4.177 27 C -0.086 4.086 28 C -0.256 4.256 29 H 0.100 0.900 30 H 0.121 0.879 31 H 0.140 0.860 32 H 0.151 0.849 33 H 0.264 0.736 34 H 0.143 0.857 35 H 0.136 0.864 36 H 0.253 0.747 37 H 0.160 0.840 38 H 0.175 0.825 39 H 0.279 0.721 40 H 0.169 0.831 41 H 0.156 0.844 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 13.659 -16.600 2.098 21.599 hybrid contribution 0.115 0.904 -0.444 1.014 sum 13.774 -15.696 1.654 20.948 Atomic orbital electron populations 1.69858 1.08734 1.30522 1.35720 1.26695 0.95582 1.04259 0.91254 0.85216 0.79017 0.76106 0.79511 1.18502 1.18831 1.18737 1.19744 0.97566 0.92584 1.43053 0.91692 1.17840 0.91938 0.92503 0.89253 1.21331 1.00052 0.97583 1.02715 1.20845 0.98906 0.92247 0.99120 1.20490 1.01512 0.98070 1.06867 1.17465 0.95699 0.84069 0.96389 1.43186 1.07498 1.14344 1.64595 1.21072 0.82501 0.89178 0.78291 1.90744 1.55398 1.46830 1.50429 1.21105 0.81692 0.94734 1.03951 1.45676 1.06711 1.21046 1.63294 1.18377 0.87926 0.81697 0.76603 1.90760 1.70101 1.34363 1.49740 1.19874 0.91695 0.97946 1.07257 1.21244 0.93946 0.97098 0.94201 1.21614 0.93739 0.99334 1.02668 1.18839 0.83878 0.92818 0.95116 1.84706 1.14443 1.86078 1.46837 1.21598 0.94138 1.00266 1.01684 1.21392 0.94523 0.96749 0.95966 1.20933 1.04717 0.92076 1.07866 0.90040 0.87887 0.86010 0.84914 0.73618 0.85745 0.86392 0.74720 0.84021 0.82519 0.72121 0.83132 0.84379 0.89344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.35 10.94 21.82 0.24 -43.12 16 2 C 0.04 1.91 5.16 85.25 0.44 2.35 16 3 Si 0.98 39.34 29.59 68.60 2.03 41.37 16 4 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 5 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 6 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 7 C -0.50 -28.28 9.05 23.46 0.21 -28.07 16 8 H 0.06 3.68 7.90 -2.91 -0.02 3.65 16 9 C 0.09 4.90 5.57 -21.31 -0.12 4.78 16 10 C -0.20 -10.38 8.69 22.75 0.20 -10.18 16 11 C -0.09 -4.10 10.02 22.20 0.22 -3.88 16 12 C -0.25 -9.95 9.97 22.58 0.23 -9.73 16 13 C 0.16 6.65 6.25 38.10 0.24 6.89 16 14 N -0.65 -20.14 5.34 -303.65 -1.62 -21.76 16 15 C 0.50 15.56 7.63 87.65 0.67 16.23 16 16 O -0.56 -22.30 13.42 -3.06 -0.04 -22.34 16 17 C 0.11 2.50 6.16 85.63 0.53 3.03 16 18 N -0.71 -17.00 5.48 -469.94 -2.57 -19.58 16 19 C 0.56 14.00 7.76 86.71 0.67 14.67 16 20 O -0.57 -16.74 16.34 -4.00 -0.07 -16.81 16 21 C -0.16 -3.45 5.87 -20.08 -0.12 -3.57 16 22 C -0.05 -0.83 9.58 22.51 0.22 -0.62 16 23 C -0.16 -2.24 9.97 22.33 0.22 -2.01 16 24 C 0.14 2.03 6.71 22.63 0.15 2.18 16 25 O -0.51 -5.83 13.49 -90.30 -1.22 -7.05 16 26 C -0.16 -2.48 9.97 22.33 0.22 -2.26 16 27 C -0.07 -1.23 9.53 22.51 0.21 -1.02 16 28 C -0.23 -12.07 8.39 22.85 0.19 -11.88 16 29 H 0.29 13.66 8.30 -92.71 -0.77 12.89 16 30 H 0.10 5.66 6.17 -2.91 -0.02 5.64 16 31 H 0.12 4.60 8.06 -2.91 -0.02 4.58 16 32 H 0.13 4.20 8.06 -2.91 -0.02 4.17 16 33 H 0.43 9.15 8.82 -92.71 -0.82 8.33 16 34 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.41 9.99 5.46 -92.71 -0.51 9.48 16 37 H 0.14 2.50 7.64 -2.91 -0.02 2.48 16 38 H 0.16 1.53 8.06 -2.91 -0.02 1.50 16 39 H 0.42 0.55 9.06 -74.06 -0.67 -0.12 16 40 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 41 H 0.14 2.36 6.39 -2.91 -0.02 2.34 16 42 H 0.09 4.75 6.48 -2.91 -0.02 4.73 16 Total: -1.00 -74.89 366.92 0.26 -74.63 By element: Atomic # 1 Polarization: 38.59 SS G_CDS: -0.88 Total: 37.72 kcal Atomic # 6 Polarization: -27.47 SS G_CDS: 4.39 Total: -23.08 kcal Atomic # 7 Polarization: -80.50 SS G_CDS: -3.96 Total: -84.45 kcal Atomic # 8 Polarization: -44.87 SS G_CDS: -1.32 Total: -46.19 kcal Atomic # 14 Polarization: 39.34 SS G_CDS: 2.03 Total: 41.37 kcal Total: -74.89 0.26 -74.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182972237.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.044 kcal (2) G-P(sol) polarization free energy of solvation -74.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds