Wall clock time and date at job start Sat Apr 11 2020 05:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34760 * 117.00245 * 2 1 4 4 O 1.21511 * 119.99792 * 0.02562 * 3 2 1 5 5 C 1.47363 * 120.00187 * 180.02562 * 3 2 1 6 6 C 1.40035 * 120.60595 * 353.40939 * 5 3 2 7 7 C 1.38323 * 118.35389 * 179.97438 * 6 5 3 8 8 C 1.50699 * 120.25665 * 179.97438 * 7 6 5 9 9 C 1.38411 * 119.49000 * 359.97438 * 7 6 5 10 10 N 1.31845 * 121.21174 * 0.02562 * 9 7 6 11 11 C 1.32354 * 121.79453 * 359.97438 * 10 9 7 12 12 N 1.38675 * 119.81497 * 179.97438 * 11 10 9 13 13 C 1.34771 * 120.00071 * 354.16752 * 12 11 10 14 14 O 1.21535 * 120.00317 * 0.02562 * 13 12 11 15 15 C 1.47844 * 120.00013 * 179.97438 * 13 12 11 16 16 C 1.39940 * 120.02630 * 359.73345 * 15 13 12 17 17 C 1.38315 * 120.35699 * 179.70916 * 16 15 13 18 18 C 1.37757 * 120.41424 * 0.56485 * 17 16 15 19 19 C 1.40757 * 120.04375 * 359.71254 * 18 17 16 20 20 C 1.41438 * 120.17816 * 180.02562 * 19 18 17 21 21 H 1.07997 * 120.00193 * 152.80627 * 20 19 18 22 22 C 1.39934 * 119.99861 * 332.80136 * 20 19 18 23 23 N 1.30834 * 120.00184 * 160.70587 * 22 20 19 24 24 Si 1.86808 * 120.00110 * 340.71116 * 22 20 19 25 25 H 1.48496 * 109.47105 * 94.86222 * 24 22 20 26 26 H 1.48502 * 109.46857 * 214.86285 * 24 22 20 27 27 H 1.48498 * 109.46709 * 334.85804 * 24 22 20 28 28 C 1.39021 * 120.02764 * 180.02562 * 15 13 12 29 29 H 1.09001 * 109.47443 * 59.99161 * 1 2 3 30 30 H 1.09006 * 109.47102 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46921 * 299.99352 * 1 2 3 32 32 H 1.08000 * 120.82926 * 359.97438 * 6 5 3 33 33 H 1.08996 * 109.47087 * 270.01616 * 8 7 6 34 34 H 1.09002 * 109.46782 * 30.01835 * 8 7 6 35 35 H 1.08998 * 109.47095 * 150.01678 * 8 7 6 36 36 H 1.07991 * 119.38850 * 179.72708 * 9 7 6 37 37 H 0.97000 * 119.99811 * 174.16718 * 12 11 10 38 38 H 1.08007 * 119.82230 * 359.96790 * 16 15 13 39 39 H 1.08003 * 119.79778 * 180.25279 * 17 16 15 40 40 H 1.08002 * 119.97992 * 179.74321 * 18 17 16 41 41 H 0.96999 * 119.99748 * 180.02562 * 23 22 20 42 42 H 1.08002 * 120.20357 * 359.97438 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4020 2.2198 0.0005 5 6 3.5354 1.2778 -0.0006 6 6 4.3101 0.1194 0.1372 7 6 5.6876 0.2456 0.1299 8 6 6.5625 -0.9727 0.2757 9 6 6.2562 1.4995 -0.0124 10 7 5.5088 2.5780 -0.1408 11 6 4.1868 2.5144 -0.1404 12 7 3.4406 3.6752 -0.2778 13 6 4.0561 4.8741 -0.2930 14 8 5.2651 4.9379 -0.1868 15 6 3.2606 6.1116 -0.4401 16 6 1.8691 6.0384 -0.5691 17 6 1.1176 7.1921 -0.7010 18 6 1.7308 8.4255 -0.7186 19 6 3.1299 8.5188 -0.5959 20 6 3.7624 9.7838 -0.6131 21 1 4.7051 9.9231 -0.1050 22 6 3.1666 10.8548 -1.2885 23 7 3.5205 12.0829 -1.0088 24 14 1.8658 10.5310 -2.5897 25 1 0.5171 10.6257 -1.9755 26 1 1.9882 11.5389 -3.6734 27 1 2.0584 9.1712 -3.1543 28 6 3.8949 7.3485 -0.4564 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 3.8438 -0.8486 0.2465 33 1 6.7678 -1.1483 1.3317 34 1 6.0516 -1.8392 -0.1442 35 1 7.5009 -0.8118 -0.2549 36 1 7.3317 1.5966 -0.0134 37 1 2.4757 3.6242 -0.3630 38 1 1.3788 5.0760 -0.5614 39 1 0.0439 7.1253 -0.7959 40 1 1.1376 9.3216 -0.8261 41 1 3.1072 12.8252 -1.4767 42 1 4.9690 7.4096 -0.3615 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188667139.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:39 Heat of formation + Delta-G solvation = -46.928984 kcal Electronic energy + Delta-G solvation = -28321.295755 eV Core-core repulsion = 24231.941233 eV Total energy + Delta-G solvation = -4089.354521 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.43958 -40.08508 -39.15257 -37.37710 -36.87344 -34.93147 -33.75478 -33.23581 -32.15665 -30.60642 -30.01742 -28.08715 -27.03056 -25.22874 -24.97092 -23.92897 -22.39552 -21.30147 -20.65853 -20.07532 -18.38860 -18.01869 -17.57136 -17.30325 -16.71500 -16.43765 -16.05880 -15.32847 -15.16350 -14.81739 -14.64344 -14.39712 -14.09365 -13.81626 -13.67626 -13.58974 -13.28518 -12.99898 -12.90313 -12.79454 -12.74425 -12.55539 -12.23317 -12.03174 -11.62598 -11.15606 -11.07719 -10.88112 -10.83278 -10.62234 -10.49396 -10.11842 -10.10378 -9.93229 -9.66452 -9.28970 -8.94810 -8.29974 -7.87752 -7.78825 -7.03300 -4.55984 0.30318 1.01808 1.92576 2.23193 2.31568 2.52161 3.04574 3.04870 3.17362 3.25001 3.39962 3.80863 3.92299 4.16562 4.40565 4.46346 4.47496 4.66808 4.77576 4.80399 4.89537 4.92157 5.21933 5.29821 5.32438 5.33912 5.41621 5.56741 5.63629 5.85967 5.89651 5.96865 6.08081 6.21162 6.37521 6.60399 6.66017 6.70742 6.95090 7.16921 7.30576 7.38637 7.45159 7.50893 7.73984 7.88656 8.04031 8.26334 8.51771 8.57649 8.69782 9.98475 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016288 B = 0.002869 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.634652 B = 9757.858647 C =11242.554584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.352 6.352 3 C 0.524 3.476 4 O -0.509 6.509 5 C -0.237 4.237 6 C 0.013 3.987 7 C -0.202 4.202 8 C -0.100 4.100 9 C 0.180 3.820 10 N -0.479 5.479 11 C 0.435 3.565 12 N -0.650 5.650 13 C 0.551 3.449 14 O -0.475 6.475 15 C -0.109 4.109 16 C -0.217 4.217 17 C -0.079 4.079 18 C -0.224 4.224 19 C 0.081 3.919 20 C -0.439 4.439 21 H 0.094 0.906 22 C 0.083 3.917 23 N -0.800 5.800 24 Si 0.913 3.087 25 H -0.269 1.269 26 H -0.290 1.290 27 H -0.243 1.243 28 C -0.133 4.133 29 H 0.066 0.934 30 H 0.103 0.897 31 H 0.066 0.934 32 H 0.149 0.851 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.166 0.834 37 H 0.431 0.569 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.287 0.713 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.498 -25.626 0.825 25.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.268 6.268 3 C 0.371 3.629 4 O -0.399 6.399 5 C -0.245 4.245 6 C -0.013 4.013 7 C -0.206 4.206 8 C -0.158 4.158 9 C 0.018 3.982 10 N -0.193 5.193 11 C 0.200 3.800 12 N -0.305 5.305 13 C 0.341 3.659 14 O -0.346 6.346 15 C -0.112 4.112 16 C -0.237 4.237 17 C -0.098 4.098 18 C -0.244 4.244 19 C 0.078 3.922 20 C -0.466 4.466 21 H 0.112 0.888 22 C -0.137 4.137 23 N -0.423 5.423 24 Si 0.739 3.261 25 H -0.195 1.195 26 H -0.217 1.217 27 H -0.167 1.167 28 C -0.153 4.153 29 H 0.085 0.915 30 H 0.122 0.878 31 H 0.085 0.915 32 H 0.167 0.833 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.183 0.817 37 H 0.282 0.718 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.122 0.878 41 H 0.098 0.902 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.565 -23.994 0.777 24.057 hybrid contribution -1.764 -0.691 -0.459 1.950 sum -3.329 -24.685 0.318 24.910 Atomic orbital electron populations 1.23349 0.75493 1.03897 1.03104 1.86527 1.23924 1.31980 1.84322 1.20820 0.88332 0.81628 0.72169 1.90585 1.66361 1.35473 1.47463 1.19394 0.90058 0.94592 1.20423 1.21516 0.92780 0.97410 0.89557 1.20777 0.94384 0.97327 1.08063 1.20607 0.98607 0.94124 1.02416 1.23031 1.00444 0.86381 0.88310 1.68053 1.03004 1.31364 1.16842 1.18564 0.88489 0.85040 0.87858 1.44663 1.13509 1.03648 1.68714 1.19177 0.87909 0.83180 0.75619 1.90792 1.13657 1.86405 1.43720 1.19311 0.93401 0.91411 1.07082 1.20475 0.92298 0.97185 1.13771 1.20494 0.97846 0.92582 0.98841 1.21188 0.94814 0.96359 1.11992 1.17672 0.91250 0.92937 0.90311 1.19534 1.07554 0.91267 1.28293 0.88762 1.26196 0.96210 0.94134 0.97131 1.69699 1.37654 0.99819 1.35161 0.86306 0.79964 0.80004 0.79823 1.19528 1.21724 1.16650 1.21234 0.99006 0.89996 1.05083 0.91483 0.87840 0.91484 0.83306 0.91146 0.91434 0.91146 0.81713 0.71780 0.88250 0.88142 0.87780 0.90240 0.86471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.57 101.05 1.07 1.32 16 2 O -0.35 -3.48 9.91 -40.65 -0.40 -3.88 16 3 C 0.52 6.69 7.88 34.44 0.27 6.97 16 4 O -0.51 -7.61 13.48 -19.27 -0.26 -7.87 16 5 C -0.24 -3.10 5.90 -104.67 -0.62 -3.72 16 6 C 0.01 0.13 9.40 -38.88 -0.37 -0.24 16 7 C -0.20 -1.85 5.89 -104.53 -0.62 -2.47 16 8 C -0.10 -0.55 10.03 36.01 0.36 -0.19 16 9 C 0.18 2.12 10.84 -17.48 -0.19 1.93 16 10 N -0.48 -7.98 7.87 -12.12 -0.10 -8.08 16 11 C 0.43 7.20 7.43 -154.87 -1.15 6.05 16 12 N -0.65 -12.01 5.17 -12.10 -0.06 -12.07 16 13 C 0.55 11.89 7.73 -12.33 -0.10 11.79 16 14 O -0.48 -11.19 14.59 5.34 0.08 -11.11 16 15 C -0.11 -2.47 5.87 -105.04 -0.62 -3.09 16 16 C -0.22 -4.58 9.55 -38.92 -0.37 -4.95 16 17 C -0.08 -1.70 10.01 -39.73 -0.40 -2.10 16 18 C -0.22 -5.36 7.19 -38.81 -0.28 -5.64 16 19 C 0.08 2.09 5.16 -106.87 -0.55 1.54 16 20 C -0.44 -11.89 9.57 -37.73 -0.36 -12.25 16 21 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 22 C 0.08 2.17 5.40 -17.34 -0.09 2.07 16 23 N -0.80 -21.12 13.93 55.55 0.77 -20.35 16 24 Si 0.91 20.56 24.48 -169.99 -4.16 16.40 16 25 H -0.27 -5.82 6.64 56.52 0.38 -5.44 16 26 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.24 -5.63 6.87 56.52 0.39 -5.24 16 28 C -0.13 -3.29 9.34 -38.44 -0.36 -3.65 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.15 1.02 7.71 -52.49 -0.40 0.62 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.30 8.09 -51.93 -0.42 -0.12 16 35 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16 36 H 0.17 1.46 8.06 -52.49 -0.42 1.04 16 37 H 0.43 7.56 3.31 -40.84 -0.14 7.43 16 38 H 0.10 1.86 6.38 -52.48 -0.33 1.52 16 39 H 0.10 1.84 8.06 -52.48 -0.42 1.41 16 40 H 0.10 2.45 4.42 -52.49 -0.23 2.22 16 41 H 0.29 6.83 8.30 -40.82 -0.34 6.49 16 42 H 0.12 2.91 7.64 -52.49 -0.40 2.51 16 LS Contribution 358.47 15.07 5.40 5.40 Total: -1.00 -31.91 358.47 -7.57 -39.49 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -4.48 Total: 8.71 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: -4.36 Total: -6.63 kcal Atomic # 7 Polarization: -41.11 SS G_CDS: 0.62 Total: -40.50 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.58 Total: -22.86 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.16 Total: 16.40 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.91 -7.57 -39.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188667139.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.442 kcal (2) G-P(sol) polarization free energy of solvation -31.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds