Wall clock time and date at job start Sat Apr 11 2020 05:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34760 * 117.00245 * 2 1 4 4 O 1.21511 * 119.99792 * 0.02562 * 3 2 1 5 5 C 1.47363 * 120.00187 * 180.02562 * 3 2 1 6 6 C 1.40035 * 120.60595 * 353.40939 * 5 3 2 7 7 C 1.38323 * 118.35389 * 179.97438 * 6 5 3 8 8 C 1.50699 * 120.25665 * 179.97438 * 7 6 5 9 9 C 1.38411 * 119.49000 * 359.97438 * 7 6 5 10 10 N 1.31845 * 121.21174 * 0.02562 * 9 7 6 11 11 C 1.32354 * 121.79453 * 359.97438 * 10 9 7 12 12 N 1.38675 * 119.81497 * 179.97438 * 11 10 9 13 13 C 1.34771 * 120.00071 * 354.16752 * 12 11 10 14 14 O 1.21535 * 120.00317 * 0.02562 * 13 12 11 15 15 C 1.47844 * 120.00013 * 179.97438 * 13 12 11 16 16 C 1.39940 * 120.02630 * 359.73345 * 15 13 12 17 17 C 1.38315 * 120.35699 * 179.70916 * 16 15 13 18 18 C 1.37757 * 120.41424 * 0.56485 * 17 16 15 19 19 C 1.40757 * 120.04375 * 359.71254 * 18 17 16 20 20 C 1.41438 * 120.17816 * 180.02562 * 19 18 17 21 21 H 1.07997 * 120.00193 * 152.80627 * 20 19 18 22 22 C 1.39934 * 119.99861 * 332.80136 * 20 19 18 23 23 N 1.30834 * 120.00184 * 160.70587 * 22 20 19 24 24 Si 1.86808 * 120.00110 * 340.71116 * 22 20 19 25 25 H 1.48496 * 109.47105 * 94.86222 * 24 22 20 26 26 H 1.48502 * 109.46857 * 214.86285 * 24 22 20 27 27 H 1.48498 * 109.46709 * 334.85804 * 24 22 20 28 28 C 1.39021 * 120.02764 * 180.02562 * 15 13 12 29 29 H 1.09001 * 109.47443 * 59.99161 * 1 2 3 30 30 H 1.09006 * 109.47102 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46921 * 299.99352 * 1 2 3 32 32 H 1.08000 * 120.82926 * 359.97438 * 6 5 3 33 33 H 1.08996 * 109.47087 * 270.01616 * 8 7 6 34 34 H 1.09002 * 109.46782 * 30.01835 * 8 7 6 35 35 H 1.08998 * 109.47095 * 150.01678 * 8 7 6 36 36 H 1.07991 * 119.38850 * 179.72708 * 9 7 6 37 37 H 0.97000 * 119.99811 * 174.16718 * 12 11 10 38 38 H 1.08007 * 119.82230 * 359.96790 * 16 15 13 39 39 H 1.08003 * 119.79778 * 180.25279 * 17 16 15 40 40 H 1.08002 * 119.97992 * 179.74321 * 18 17 16 41 41 H 0.96999 * 119.99748 * 180.02562 * 23 22 20 42 42 H 1.08002 * 120.20357 * 359.97438 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4020 2.2198 0.0005 5 6 3.5354 1.2778 -0.0006 6 6 4.3101 0.1194 0.1372 7 6 5.6876 0.2456 0.1299 8 6 6.5625 -0.9727 0.2757 9 6 6.2562 1.4995 -0.0124 10 7 5.5088 2.5780 -0.1408 11 6 4.1868 2.5144 -0.1404 12 7 3.4406 3.6752 -0.2778 13 6 4.0561 4.8741 -0.2930 14 8 5.2651 4.9379 -0.1868 15 6 3.2606 6.1116 -0.4401 16 6 1.8691 6.0384 -0.5691 17 6 1.1176 7.1921 -0.7010 18 6 1.7308 8.4255 -0.7186 19 6 3.1299 8.5188 -0.5959 20 6 3.7624 9.7838 -0.6131 21 1 4.7051 9.9231 -0.1050 22 6 3.1666 10.8548 -1.2885 23 7 3.5205 12.0829 -1.0088 24 14 1.8658 10.5310 -2.5897 25 1 0.5171 10.6257 -1.9755 26 1 1.9882 11.5389 -3.6734 27 1 2.0584 9.1712 -3.1543 28 6 3.8949 7.3485 -0.4564 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 3.8438 -0.8486 0.2465 33 1 6.7678 -1.1483 1.3317 34 1 6.0516 -1.8392 -0.1442 35 1 7.5009 -0.8118 -0.2549 36 1 7.3317 1.5966 -0.0134 37 1 2.4757 3.6242 -0.3630 38 1 1.3788 5.0760 -0.5614 39 1 0.0439 7.1253 -0.7959 40 1 1.1376 9.3216 -0.8261 41 1 3.1072 12.8252 -1.4767 42 1 4.9690 7.4096 -0.3615 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188667139.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:38 Heat of formation + Delta-G solvation = -66.164741 kcal Electronic energy + Delta-G solvation = -28322.129880 eV Core-core repulsion = 24231.941233 eV Total energy + Delta-G solvation = -4090.188646 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.52295 -41.18990 -40.49852 -39.11440 -37.82605 -36.21066 -35.63835 -34.26956 -33.26285 -32.33471 -31.80203 -28.74303 -27.99487 -27.04588 -25.89407 -25.28201 -23.71074 -22.61027 -22.14616 -21.61809 -19.85581 -19.04979 -18.90268 -18.24511 -18.11672 -17.61216 -17.50119 -16.70330 -16.55663 -16.46200 -16.02859 -15.49754 -15.29606 -15.17772 -15.05453 -14.60559 -14.55131 -14.34273 -14.10074 -13.93499 -13.70271 -13.67729 -13.41122 -13.08983 -12.89267 -12.81665 -12.75451 -12.37472 -11.89761 -11.85485 -11.79455 -11.75468 -11.64657 -11.42409 -11.07402 -11.05484 -10.25612 -9.74817 -9.70875 -9.31396 -8.97196 -6.59423 -0.70106 -0.06561 0.31213 0.67745 1.23429 1.28074 1.39581 1.46560 1.46970 1.75137 1.82989 2.09567 2.53746 2.73174 3.20342 3.39341 3.43563 3.59185 3.75928 3.87882 4.03394 4.17878 4.24009 4.32186 4.33239 4.36376 4.49181 4.63889 4.74549 4.76537 4.81247 4.83664 4.96089 4.99179 5.09173 5.15330 5.24023 5.30871 5.35630 5.55398 5.60735 5.65347 5.77680 5.97311 6.13894 6.24408 6.46615 6.59019 6.68361 6.77515 7.12147 8.11190 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016288 B = 0.002869 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.634652 B = 9757.858647 C =11242.554584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.342 6.342 3 C 0.526 3.474 4 O -0.535 6.535 5 C -0.233 4.233 6 C 0.019 3.981 7 C -0.173 4.173 8 C -0.099 4.099 9 C 0.159 3.841 10 N -0.524 5.524 11 C 0.393 3.607 12 N -0.647 5.647 13 C 0.551 3.449 14 O -0.509 6.509 15 C -0.114 4.114 16 C -0.193 4.193 17 C -0.076 4.076 18 C -0.227 4.227 19 C 0.068 3.932 20 C -0.481 4.481 21 H 0.054 0.946 22 C 0.048 3.952 23 N -0.840 5.840 24 Si 0.967 3.033 25 H -0.245 1.245 26 H -0.275 1.275 27 H -0.254 1.254 28 C -0.160 4.160 29 H 0.064 0.936 30 H 0.140 0.860 31 H 0.064 0.936 32 H 0.188 0.812 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.186 0.814 37 H 0.433 0.567 38 H 0.131 0.869 39 H 0.147 0.853 40 H 0.112 0.888 41 H 0.298 0.702 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.072 -30.390 0.301 30.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.257 6.257 3 C 0.373 3.627 4 O -0.427 6.427 5 C -0.240 4.240 6 C -0.006 4.006 7 C -0.176 4.176 8 C -0.156 4.156 9 C 0.000 4.000 10 N -0.239 5.239 11 C 0.161 3.839 12 N -0.304 5.304 13 C 0.340 3.660 14 O -0.383 6.383 15 C -0.117 4.117 16 C -0.213 4.213 17 C -0.094 4.094 18 C -0.246 4.246 19 C 0.066 3.934 20 C -0.510 4.510 21 H 0.073 0.927 22 C -0.168 4.168 23 N -0.465 5.465 24 Si 0.789 3.211 25 H -0.170 1.170 26 H -0.201 1.201 27 H -0.177 1.177 28 C -0.181 4.181 29 H 0.083 0.917 30 H 0.158 0.842 31 H 0.083 0.917 32 H 0.205 0.795 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.203 0.797 37 H 0.285 0.715 38 H 0.149 0.851 39 H 0.165 0.835 40 H 0.130 0.870 41 H 0.108 0.892 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.133 -28.839 0.271 29.135 hybrid contribution -0.931 0.358 -0.202 1.017 sum -5.063 -28.481 0.069 28.928 Atomic orbital electron populations 1.23699 0.73636 1.06308 1.02954 1.86519 1.25595 1.30046 1.83514 1.20809 0.88201 0.82091 0.71584 1.90546 1.66831 1.36550 1.48778 1.19530 0.90780 0.94233 1.19467 1.21992 0.92823 0.97709 0.88101 1.21216 0.94780 0.97606 1.04007 1.20749 0.98518 0.92647 1.03731 1.23522 1.01257 0.86574 0.88599 1.67885 1.03792 1.34241 1.17983 1.18728 0.88878 0.85294 0.91010 1.44359 1.13554 1.03409 1.69061 1.18993 0.87422 0.83979 0.75559 1.90762 1.14818 1.87029 1.45647 1.19569 0.94608 0.91372 1.06166 1.20903 0.91388 0.98783 1.10209 1.20971 1.00196 0.91228 0.97015 1.21394 0.93817 0.97988 1.11423 1.17762 0.92527 0.92346 0.90790 1.19475 1.07251 0.93247 1.31035 0.92746 1.26910 0.98110 0.93505 0.98297 1.69717 1.39506 1.00640 1.36659 0.85490 0.78490 0.79477 0.77624 1.17003 1.20138 1.17737 1.21155 0.98320 0.91164 1.07440 0.91671 0.84156 0.91678 0.79517 0.89669 0.89289 0.89963 0.79674 0.71483 0.85079 0.83526 0.87046 0.89176 0.88577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.57 113.37 1.20 1.49 16 2 O -0.34 -5.58 9.91 -56.71 -0.56 -6.14 16 3 C 0.53 12.28 7.88 70.22 0.55 12.83 16 4 O -0.54 -15.12 13.48 19.80 0.27 -14.86 16 5 C -0.23 -5.68 5.90 -19.90 -0.12 -5.80 16 6 C 0.02 0.30 9.40 22.73 0.21 0.52 16 7 C -0.17 -2.61 5.89 -19.80 -0.12 -2.72 16 8 C -0.10 -0.63 10.03 71.24 0.71 0.09 16 9 C 0.16 3.58 10.84 84.73 0.92 4.50 16 10 N -0.52 -17.77 7.87 -192.27 -1.51 -19.28 16 11 C 0.39 13.02 7.43 133.52 0.99 14.01 16 12 N -0.65 -24.12 5.17 -310.49 -1.61 -25.73 16 13 C 0.55 24.66 7.73 86.79 0.67 25.33 16 14 O -0.51 -25.47 14.59 -3.83 -0.06 -25.52 16 15 C -0.11 -5.29 5.87 -20.13 -0.12 -5.41 16 16 C -0.19 -7.80 9.55 22.70 0.22 -7.59 16 17 C -0.08 -3.06 10.01 22.17 0.22 -2.83 16 18 C -0.23 -10.69 7.19 22.77 0.16 -10.52 16 19 C 0.07 3.66 5.16 -21.32 -0.11 3.55 16 20 C -0.48 -28.05 9.57 23.47 0.22 -27.83 16 21 H 0.05 3.45 8.06 -2.91 -0.02 3.43 16 22 C 0.05 2.58 5.40 85.25 0.46 3.04 16 23 N -0.84 -46.38 13.93 21.82 0.30 -46.07 16 24 Si 0.97 42.27 24.48 68.60 1.68 43.95 16 25 H -0.25 -9.74 6.64 99.48 0.66 -9.08 16 26 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 27 H -0.25 -11.41 6.87 99.48 0.68 -10.73 16 28 C -0.16 -8.43 9.34 23.01 0.21 -8.22 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.14 0.47 8.14 -2.38 -0.02 0.45 16 31 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.19 1.54 7.71 -2.91 -0.02 1.52 16 33 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.09 0.27 8.09 -2.39 -0.02 0.25 16 35 H 0.08 0.40 8.09 -2.39 -0.02 0.38 16 36 H 0.19 3.09 8.06 -2.91 -0.02 3.06 16 37 H 0.43 14.93 3.31 -93.03 -0.31 14.63 16 38 H 0.13 4.50 6.38 -2.91 -0.02 4.48 16 39 H 0.15 4.58 8.06 -2.91 -0.02 4.56 16 40 H 0.11 5.06 4.42 -2.91 -0.01 5.04 16 41 H 0.30 14.58 8.30 -92.71 -0.77 13.81 16 42 H 0.10 5.30 7.64 -2.91 -0.02 5.28 16 Total: -1.00 -76.35 358.47 5.52 -70.83 By element: Atomic # 1 Polarization: 27.69 SS G_CDS: 0.71 Total: 28.40 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: 6.30 Total: -5.57 kcal Atomic # 7 Polarization: -88.27 SS G_CDS: -2.81 Total: -91.09 kcal Atomic # 8 Polarization: -46.17 SS G_CDS: -0.35 Total: -46.52 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 1.68 Total: 43.95 kcal Total: -76.35 5.52 -70.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188667139.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.660 kcal (2) G-P(sol) polarization free energy of solvation -76.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds