Wall clock time and date at job start Sat Apr 11 2020 05:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86803 * 119.99516 * 2 1 4 4 H 1.48502 * 109.47394 * 269.99950 * 3 2 1 5 5 H 1.48496 * 109.46984 * 30.00563 * 3 2 1 6 6 H 1.48503 * 109.46588 * 150.00043 * 3 2 1 7 7 C 1.38800 * 120.00320 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99595 * 0.02562 * 7 2 1 9 9 S 1.76199 * 120.00008 * 179.97438 * 7 2 1 10 10 C 1.80996 * 100.00034 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47068 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00492 * 359.97438 * 11 10 9 13 13 N 1.34783 * 119.99652 * 180.02562 * 11 10 9 14 14 C 1.44666 * 118.54967 * 359.97438 * 13 11 10 15 15 C 1.54946 * 109.52707 * 269.05641 * 14 13 11 16 16 C 1.47544 * 109.73296 * 290.52336 * 15 14 13 17 17 N 1.46273 * 114.37434 * 62.21544 * 16 15 14 18 18 C 1.46903 * 110.99937 * 148.54884 * 17 16 15 19 19 C 1.53008 * 109.46537 * 65.50278 * 18 17 16 20 20 C 1.52995 * 109.46656 * 182.42754 * 19 18 17 21 21 F 1.39901 * 109.47124 * 60.00404 * 20 19 18 22 22 F 1.39901 * 109.47559 * 300.00300 * 20 19 18 23 23 F 1.39898 * 109.47123 * 179.97438 * 20 19 18 24 24 C 1.44761 * 110.63883 * 272.25280 * 17 16 15 25 25 C 1.47783 * 118.54382 * 179.97438 * 13 11 10 26 26 H 0.96995 * 120.00512 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.46872 * 59.99997 * 10 9 7 28 28 H 1.08997 * 109.47507 * 300.00224 * 10 9 7 29 29 H 1.09004 * 109.46767 * 149.04249 * 14 13 11 30 30 H 1.09001 * 109.45660 * 29.06551 * 14 13 11 31 31 H 1.09001 * 109.43262 * 170.44082 * 15 14 13 32 32 H 1.09003 * 109.38202 * 50.57638 * 15 14 13 33 33 H 1.08995 * 108.50695 * 300.94947 * 16 15 14 34 34 H 1.08997 * 108.37830 * 183.38905 * 16 15 14 35 35 H 1.08992 * 109.47275 * 305.50682 * 18 17 16 36 36 H 1.08999 * 109.47135 * 185.49832 * 18 17 16 37 37 H 1.09002 * 109.47059 * 62.42954 * 19 18 17 38 38 H 1.08996 * 109.46941 * 302.42787 * 19 18 17 39 39 H 1.09007 * 109.43080 * 214.22481 * 24 17 16 40 40 H 1.08998 * 109.43617 * 334.09010 * 24 17 16 41 41 H 1.08998 * 109.06558 * 258.66557 * 25 13 11 42 42 H 1.09002 * 109.06605 * 17.59899 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0466 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0104 -1.2020 -0.0005 8 1 1.4704 -2.1373 -0.0014 9 16 3.7724 -1.2019 -0.0012 10 6 4.0868 -2.9844 -0.0009 11 6 5.5732 -3.2322 -0.0008 12 8 6.3442 -2.2960 -0.0014 13 7 6.0459 -4.4945 -0.0011 14 6 5.0983 -5.5876 -0.0010 15 6 4.7777 -5.9949 1.4592 16 6 5.9599 -6.6327 2.0695 17 7 7.1326 -5.7637 2.1653 18 6 7.9435 -6.1018 3.3426 19 6 8.5287 -7.5053 3.1727 20 6 9.3235 -7.8814 4.4248 21 9 8.4767 -7.8610 5.5382 22 9 10.3618 -6.9627 4.6117 23 9 9.8581 -9.1649 4.2697 24 6 7.9215 -5.8358 0.9537 25 6 7.5093 -4.7005 -0.0016 26 1 -0.4851 0.8400 -0.0004 27 1 3.6435 -3.4316 -0.8907 28 1 3.6442 -3.4313 0.8892 29 1 5.5261 -6.4393 -0.5299 30 1 4.1815 -5.2734 -0.5000 31 1 3.9436 -6.6966 1.4651 32 1 4.5086 -5.1071 2.0316 33 1 6.2255 -7.5079 1.4767 34 1 5.6920 -6.9641 3.0727 35 1 7.3180 -6.0747 4.2347 36 1 8.7540 -5.3802 3.4450 37 1 9.1885 -7.5213 2.3051 38 1 7.7197 -8.2211 3.0271 39 1 8.9780 -5.7350 1.2023 40 1 7.7539 -6.7973 0.4685 41 1 7.8333 -4.9505 -1.0118 42 1 7.9989 -3.7778 0.3099 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194919716.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:41 Heat of formation + Delta-G solvation = -179.341462 kcal Electronic energy + Delta-G solvation = -27929.581139 eV Core-core repulsion = 23428.071993 eV Total energy + Delta-G solvation = -4501.509146 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.117 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.53408 -48.03691 -48.00343 -40.37328 -38.61294 -35.70473 -33.13179 -32.53441 -32.41216 -29.78010 -27.99512 -26.40067 -25.59838 -25.02438 -23.19074 -22.30083 -20.52943 -19.10958 -18.95203 -18.79546 -17.93451 -17.57858 -17.01664 -16.50531 -15.92779 -15.63449 -15.20979 -14.99329 -14.91343 -14.82653 -14.45619 -14.36583 -14.32279 -14.15104 -14.13240 -13.87238 -13.67519 -13.35195 -13.08844 -12.98685 -12.77787 -12.44803 -12.32885 -11.99208 -11.83857 -11.58500 -11.44712 -11.23670 -11.14118 -10.98848 -10.92666 -10.54659 -9.82893 -9.36708 -8.97919 -8.77979 -8.49046 -8.43368 -6.88065 -6.26763 -3.97691 2.29203 2.76565 3.03858 3.16402 3.28992 3.35267 3.50354 3.53175 3.55029 3.56877 3.67324 4.32873 4.34459 4.35656 4.48623 4.63628 4.64513 4.72178 4.76673 4.85483 4.98980 5.08814 5.12139 5.12918 5.25876 5.28777 5.35597 5.44684 5.53462 5.62805 5.68363 5.85380 5.90079 5.98771 6.15250 6.54873 6.71667 6.76892 7.54316 7.96346 8.43500 8.54863 9.19835 10.82470 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.022180 B = 0.002327 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.072409 B =12029.156603 C =12087.944619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.095 3.905 3 Si 0.856 3.144 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.235 1.235 7 C -0.519 4.519 8 H 0.087 0.913 9 S -0.145 6.145 10 C -0.119 4.119 11 C 0.532 3.468 12 O -0.521 6.521 13 N -0.602 5.602 14 C 0.112 3.888 15 C -0.142 4.142 16 C 0.058 3.942 17 N -0.519 5.519 18 C 0.057 3.943 19 C -0.208 4.208 20 C 0.456 3.544 21 F -0.182 7.182 22 F -0.182 7.182 23 F -0.187 7.187 24 C 0.039 3.961 25 C 0.123 3.877 26 H 0.270 0.730 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.037 0.963 34 H 0.068 0.932 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.081 0.919 40 H 0.047 0.953 41 H 0.062 0.938 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.770 -21.263 5.239 28.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.666 4.666 8 H 0.105 0.895 9 S 0.081 5.919 10 C -0.270 4.270 11 C 0.319 3.681 12 O -0.396 6.396 13 N -0.337 5.337 14 C -0.012 4.012 15 C -0.182 4.182 16 C -0.070 4.070 17 N -0.240 5.240 18 C -0.072 4.072 19 C -0.248 4.248 20 C 0.401 3.599 21 F -0.164 7.164 22 F -0.163 7.163 23 F -0.169 7.169 24 C -0.090 4.090 25 C 0.000 4.000 26 H 0.080 0.920 27 H 0.112 0.888 28 H 0.114 0.886 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.055 0.945 34 H 0.087 0.913 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.100 0.900 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 18.591 -19.308 5.302 27.323 hybrid contribution -0.449 -1.446 0.140 1.520 sum 18.142 -20.754 5.443 28.097 Atomic orbital electron populations 1.69937 1.05915 1.27727 1.48263 1.24712 0.94439 0.98959 0.93225 0.86737 0.81948 0.83289 0.79900 1.19259 1.20016 1.15871 1.22311 0.88329 0.97454 1.58556 0.89456 1.84798 1.09158 1.00525 1.97385 1.23333 0.94408 1.03872 1.05371 1.20288 0.90477 0.82237 0.75053 1.90669 1.58683 1.42011 1.48223 1.47487 1.05677 1.05769 1.74729 1.21567 0.93430 0.89955 0.96261 1.21496 0.97058 1.02467 0.97134 1.21070 0.91399 0.93420 1.01065 1.61016 1.07128 1.53803 1.02087 1.22446 0.98206 0.91542 0.94961 1.23784 1.02154 1.03700 0.95203 1.20488 0.78603 0.74451 0.86308 1.93200 1.70655 1.96185 1.56342 1.93202 1.60561 1.66557 1.96029 1.93195 1.87378 1.40550 1.95728 1.22492 0.97644 0.98212 0.90651 1.21787 0.80825 0.99871 0.97554 0.91988 0.88816 0.88558 0.91141 0.89651 0.89908 0.90135 0.94470 0.91330 0.89046 0.88923 0.87177 0.87275 0.90033 0.93440 0.92022 0.88813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.60 13.97 55.49 0.78 -25.82 16 2 C 0.10 2.78 5.50 -17.43 -0.10 2.69 16 3 Si 0.86 21.88 27.74 -169.99 -4.71 17.17 16 4 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.23 -6.00 6.74 56.52 0.38 -5.62 16 7 C -0.52 -14.91 10.04 30.94 0.31 -14.60 16 8 H 0.09 2.60 8.03 -52.49 -0.42 2.18 16 9 S -0.15 -3.70 18.55 -107.50 -1.99 -5.69 16 10 C -0.12 -2.31 4.62 36.00 0.17 -2.15 16 11 C 0.53 9.55 7.65 -10.98 -0.08 9.46 16 12 O -0.52 -11.32 15.14 5.56 0.08 -11.23 16 13 N -0.60 -7.78 2.54 -172.24 -0.44 -8.22 16 14 C 0.11 1.10 5.23 -4.00 -0.02 1.08 16 15 C -0.14 -1.27 5.95 -28.34 -0.17 -1.44 16 16 C 0.06 0.43 3.88 -6.80 -0.03 0.40 16 17 N -0.52 -4.38 4.37 -239.61 -1.05 -5.42 16 18 C 0.06 0.39 4.75 -3.82 -0.02 0.37 16 19 C -0.21 -1.04 4.75 -26.73 -0.13 -1.16 16 20 C 0.46 3.15 3.16 37.15 0.12 3.27 16 21 F -0.18 -1.48 16.75 2.25 0.04 -1.44 16 22 F -0.18 -1.47 16.84 2.25 0.04 -1.43 16 23 F -0.19 -1.46 17.32 2.25 0.04 -1.42 16 24 C 0.04 0.29 4.35 -4.45 -0.02 0.27 16 25 C 0.12 1.32 6.45 -2.82 -0.02 1.30 16 26 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 27 H 0.09 1.69 7.30 -51.91 -0.38 1.31 16 28 H 0.10 1.76 7.27 -51.92 -0.38 1.38 16 29 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 30 H 0.09 0.88 6.18 -51.93 -0.32 0.56 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.94 7.42 -51.93 -0.39 0.55 16 33 H 0.04 0.22 6.99 -51.93 -0.36 -0.14 16 34 H 0.07 0.46 7.52 -51.93 -0.39 0.07 16 35 H 0.09 0.65 7.47 -51.93 -0.39 0.26 16 36 H 0.09 0.66 7.83 -51.93 -0.41 0.25 16 37 H 0.11 0.43 6.90 -51.93 -0.36 0.07 16 38 H 0.11 0.45 7.16 -51.93 -0.37 0.08 16 39 H 0.08 0.49 7.06 -51.93 -0.37 0.12 16 40 H 0.05 0.28 7.14 -51.93 -0.37 -0.09 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.09 1.24 6.97 -51.93 -0.36 0.87 16 LS Contribution 354.43 15.07 5.34 5.34 Total: -1.00 -34.30 354.43 -7.54 -41.85 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: -5.68 Total: -3.17 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: 0.02 Total: -0.51 kcal Atomic # 7 Polarization: -38.76 SS G_CDS: -0.71 Total: -39.46 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.08 Total: -11.23 kcal Atomic # 9 Polarization: -4.40 SS G_CDS: 0.11 Total: -4.29 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.71 Total: 17.17 kcal Atomic # 16 Polarization: -3.70 SS G_CDS: -1.99 Total: -5.69 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.30 -7.54 -41.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194919716.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.494 kcal (2) G-P(sol) polarization free energy of solvation -34.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds