Wall clock time and date at job start Sat Apr 11 2020 05:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86803 * 119.99516 * 2 1 4 4 H 1.48502 * 109.47394 * 269.99950 * 3 2 1 5 5 H 1.48496 * 109.46984 * 30.00563 * 3 2 1 6 6 H 1.48503 * 109.46588 * 150.00043 * 3 2 1 7 7 C 1.38800 * 120.00320 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99595 * 0.02562 * 7 2 1 9 9 S 1.76199 * 120.00008 * 179.97438 * 7 2 1 10 10 C 1.80996 * 100.00034 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47068 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00492 * 359.97438 * 11 10 9 13 13 N 1.34783 * 119.99652 * 180.02562 * 11 10 9 14 14 C 1.44666 * 118.54967 * 359.97438 * 13 11 10 15 15 C 1.54946 * 109.52707 * 269.05641 * 14 13 11 16 16 C 1.47544 * 109.73296 * 290.52336 * 15 14 13 17 17 N 1.46273 * 114.37434 * 62.21544 * 16 15 14 18 18 C 1.46903 * 110.99937 * 148.54884 * 17 16 15 19 19 C 1.53008 * 109.46537 * 65.50278 * 18 17 16 20 20 C 1.52995 * 109.46656 * 182.42754 * 19 18 17 21 21 F 1.39901 * 109.47124 * 60.00404 * 20 19 18 22 22 F 1.39901 * 109.47559 * 300.00300 * 20 19 18 23 23 F 1.39898 * 109.47123 * 179.97438 * 20 19 18 24 24 C 1.44761 * 110.63883 * 272.25280 * 17 16 15 25 25 C 1.47783 * 118.54382 * 179.97438 * 13 11 10 26 26 H 0.96995 * 120.00512 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.46872 * 59.99997 * 10 9 7 28 28 H 1.08997 * 109.47507 * 300.00224 * 10 9 7 29 29 H 1.09004 * 109.46767 * 149.04249 * 14 13 11 30 30 H 1.09001 * 109.45660 * 29.06551 * 14 13 11 31 31 H 1.09001 * 109.43262 * 170.44082 * 15 14 13 32 32 H 1.09003 * 109.38202 * 50.57638 * 15 14 13 33 33 H 1.08995 * 108.50695 * 300.94947 * 16 15 14 34 34 H 1.08997 * 108.37830 * 183.38905 * 16 15 14 35 35 H 1.08992 * 109.47275 * 305.50682 * 18 17 16 36 36 H 1.08999 * 109.47135 * 185.49832 * 18 17 16 37 37 H 1.09002 * 109.47059 * 62.42954 * 19 18 17 38 38 H 1.08996 * 109.46941 * 302.42787 * 19 18 17 39 39 H 1.09007 * 109.43080 * 214.22481 * 24 17 16 40 40 H 1.08998 * 109.43617 * 334.09010 * 24 17 16 41 41 H 1.08998 * 109.06558 * 258.66557 * 25 13 11 42 42 H 1.09002 * 109.06605 * 17.59899 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0466 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0104 -1.2020 -0.0005 8 1 1.4704 -2.1373 -0.0014 9 16 3.7724 -1.2019 -0.0012 10 6 4.0868 -2.9844 -0.0009 11 6 5.5732 -3.2322 -0.0008 12 8 6.3442 -2.2960 -0.0014 13 7 6.0459 -4.4945 -0.0011 14 6 5.0983 -5.5876 -0.0010 15 6 4.7777 -5.9949 1.4592 16 6 5.9599 -6.6327 2.0695 17 7 7.1326 -5.7637 2.1653 18 6 7.9435 -6.1018 3.3426 19 6 8.5287 -7.5053 3.1727 20 6 9.3235 -7.8814 4.4248 21 9 8.4767 -7.8610 5.5382 22 9 10.3618 -6.9627 4.6117 23 9 9.8581 -9.1649 4.2697 24 6 7.9215 -5.8358 0.9537 25 6 7.5093 -4.7005 -0.0016 26 1 -0.4851 0.8400 -0.0004 27 1 3.6435 -3.4316 -0.8907 28 1 3.6442 -3.4313 0.8892 29 1 5.5261 -6.4393 -0.5299 30 1 4.1815 -5.2734 -0.5000 31 1 3.9436 -6.6966 1.4651 32 1 4.5086 -5.1071 2.0316 33 1 6.2255 -7.5079 1.4767 34 1 5.6920 -6.9641 3.0727 35 1 7.3180 -6.0747 4.2347 36 1 8.7540 -5.3802 3.4450 37 1 9.1885 -7.5213 2.3051 38 1 7.7197 -8.2211 3.0271 39 1 8.9780 -5.7350 1.2023 40 1 7.7539 -6.7973 0.4685 41 1 7.8333 -4.9505 -1.0118 42 1 7.9989 -3.7778 0.3099 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194919716.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:41 Heat of formation + Delta-G solvation = -202.474531 kcal Electronic energy + Delta-G solvation = -27930.584264 eV Core-core repulsion = 23428.071993 eV Total energy + Delta-G solvation = -4502.512272 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.117 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.09462 -48.60242 -48.58322 -41.33368 -39.59240 -36.71102 -34.66062 -33.89506 -33.19593 -31.02213 -28.91911 -27.82638 -27.14132 -25.67810 -23.76870 -23.20428 -21.15056 -20.38729 -19.54338 -19.48211 -19.33505 -18.43957 -18.17227 -17.49764 -17.08417 -16.83371 -16.37882 -16.15072 -15.73057 -15.63193 -15.48944 -15.24784 -15.03474 -14.92397 -14.86855 -14.74069 -14.71547 -14.42756 -14.28627 -14.04323 -13.68031 -13.44803 -13.33084 -13.07186 -12.97409 -12.89505 -12.63202 -12.51913 -12.32226 -11.98944 -11.85910 -11.82837 -11.57642 -11.16044 -10.80674 -10.49198 -9.55892 -9.31090 -8.97943 -8.50608 -6.20805 1.00965 1.31443 1.47717 1.56272 1.64341 1.79667 2.17798 2.26262 2.68464 2.73579 2.87626 2.99859 3.07175 3.07915 3.66310 3.84442 3.86940 3.91739 4.01956 4.08348 4.18589 4.23854 4.35534 4.41909 4.45308 4.51543 4.61794 4.64944 4.75470 4.83962 4.94727 4.97704 5.01938 5.04593 5.36428 5.69843 5.72016 6.09010 6.12200 6.18868 6.36792 6.94964 7.21955 8.61748 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.022180 B = 0.002327 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.072409 B =12029.156603 C =12087.944619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.046 3.954 3 Si 0.913 3.087 4 H -0.262 1.262 5 H -0.259 1.259 6 H -0.239 1.239 7 C -0.525 4.525 8 H 0.062 0.938 9 S -0.182 6.182 10 C -0.102 4.102 11 C 0.529 3.471 12 O -0.568 6.568 13 N -0.585 5.585 14 C 0.103 3.897 15 C -0.138 4.138 16 C 0.055 3.945 17 N -0.546 5.546 18 C 0.062 3.938 19 C -0.194 4.194 20 C 0.454 3.546 21 F -0.192 7.192 22 F -0.191 7.191 23 F -0.192 7.192 24 C 0.046 3.954 25 C 0.117 3.883 26 H 0.277 0.723 27 H 0.108 0.892 28 H 0.105 0.895 29 H 0.107 0.893 30 H 0.078 0.922 31 H 0.105 0.895 32 H 0.045 0.955 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.128 0.872 38 H 0.125 0.875 39 H 0.098 0.902 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.140 -23.488 4.838 30.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.159 4.159 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.183 1.183 6 H -0.163 1.163 7 C -0.672 4.672 8 H 0.081 0.919 9 S 0.045 5.955 10 C -0.253 4.253 11 C 0.317 3.683 12 O -0.448 6.448 13 N -0.317 5.317 14 C -0.020 4.020 15 C -0.177 4.177 16 C -0.072 4.072 17 N -0.268 5.268 18 C -0.067 4.067 19 C -0.234 4.234 20 C 0.399 3.601 21 F -0.174 7.174 22 F -0.173 7.173 23 F -0.173 7.173 24 C -0.082 4.082 25 C -0.006 4.006 26 H 0.086 0.914 27 H 0.127 0.873 28 H 0.124 0.876 29 H 0.125 0.875 30 H 0.096 0.904 31 H 0.123 0.877 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.146 0.854 38 H 0.143 0.857 39 H 0.116 0.884 40 H 0.095 0.905 41 H 0.100 0.900 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 19.959 -21.597 4.908 29.814 hybrid contribution -0.853 -0.936 0.281 1.297 sum 19.106 -22.532 5.189 29.994 Atomic orbital electron populations 1.70010 1.07223 1.28975 1.49301 1.25542 0.95263 1.02169 0.92970 0.85882 0.80662 0.79723 0.80202 1.18673 1.18349 1.16253 1.22433 0.90127 0.96640 1.58025 0.91938 1.84736 1.06543 1.06708 1.97530 1.23291 0.96455 0.98961 1.06552 1.20024 0.89214 0.83662 0.75447 1.90651 1.59201 1.43836 1.51086 1.47525 1.07408 1.04605 1.72156 1.21891 0.92767 0.89883 0.97500 1.21482 0.98791 1.01655 0.95774 1.21095 0.90392 0.93828 1.01869 1.60910 1.07987 1.55090 1.02850 1.22308 0.97708 0.92548 0.94114 1.23721 1.02517 1.02607 0.94522 1.20812 0.78437 0.74070 0.86747 1.93183 1.70869 1.96201 1.57116 1.93186 1.61108 1.66870 1.96129 1.93185 1.87498 1.40915 1.95734 1.22471 0.98279 0.97792 0.89707 1.22041 0.78699 1.00087 0.99755 0.91389 0.87342 0.87630 0.87477 0.90366 0.87722 0.93615 0.91622 0.90732 0.89840 0.89696 0.85379 0.85675 0.88409 0.90531 0.90039 0.91890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.05 13.97 21.65 0.30 -55.75 16 2 C 0.05 2.71 5.50 84.86 0.47 3.18 16 3 Si 0.91 45.56 27.74 68.60 1.90 47.46 16 4 H -0.26 -12.73 7.11 99.48 0.71 -12.02 16 5 H -0.26 -12.11 7.11 99.48 0.71 -11.40 16 6 H -0.24 -11.97 6.74 99.48 0.67 -11.30 16 7 C -0.52 -30.78 10.04 67.95 0.68 -30.10 16 8 H 0.06 3.85 8.03 -2.91 -0.02 3.82 16 9 S -0.18 -9.39 18.55 -56.49 -1.05 -10.44 16 10 C -0.10 -3.96 4.62 71.23 0.33 -3.63 16 11 C 0.53 18.90 7.65 87.65 0.67 19.57 16 12 O -0.57 -25.12 15.14 -3.02 -0.05 -25.16 16 13 N -0.58 -14.09 2.54 -817.24 -2.07 -16.16 16 14 C 0.10 1.71 5.23 87.39 0.46 2.17 16 15 C -0.14 -2.10 5.95 29.55 0.18 -1.92 16 16 C 0.06 0.62 3.88 84.72 0.33 0.94 16 17 N -0.55 -7.73 4.37 -911.99 -3.99 -11.72 16 18 C 0.06 0.70 4.75 86.31 0.41 1.11 16 19 C -0.19 -1.29 4.75 30.60 0.15 -1.15 16 20 C 0.45 5.37 3.16 71.98 0.23 5.60 16 21 F -0.19 -2.87 16.75 44.97 0.75 -2.11 16 22 F -0.19 -2.83 16.84 44.97 0.76 -2.07 16 23 F -0.19 -2.59 17.32 44.97 0.78 -1.81 16 24 C 0.05 0.51 4.35 87.04 0.38 0.89 16 25 C 0.12 2.24 6.45 86.47 0.56 2.80 16 26 H 0.28 15.64 8.31 -92.71 -0.77 14.87 16 27 H 0.11 3.87 7.30 -2.39 -0.02 3.85 16 28 H 0.11 3.89 7.27 -2.40 -0.02 3.87 16 29 H 0.11 1.09 8.10 -2.39 -0.02 1.07 16 30 H 0.08 1.44 6.18 -2.39 -0.01 1.43 16 31 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.05 1.03 7.42 -2.39 -0.02 1.01 16 33 H 0.07 0.40 6.99 -2.39 -0.02 0.38 16 34 H 0.07 0.77 7.52 -2.39 -0.02 0.75 16 35 H 0.08 1.08 7.47 -2.39 -0.02 1.06 16 36 H 0.08 1.09 7.83 -2.39 -0.02 1.07 16 37 H 0.13 0.44 6.90 -2.39 -0.02 0.42 16 38 H 0.12 0.49 7.16 -2.39 -0.02 0.47 16 39 H 0.10 0.81 7.06 -2.38 -0.02 0.79 16 40 H 0.08 0.45 7.14 -2.39 -0.02 0.44 16 41 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.06 1.64 6.97 -2.39 -0.02 1.62 16 Total: -1.00 -76.91 354.43 3.18 -73.73 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: 1.01 Total: 4.56 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: 4.83 Total: -0.53 kcal Atomic # 7 Polarization: -77.87 SS G_CDS: -5.76 Total: -83.63 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -0.05 Total: -25.16 kcal Atomic # 9 Polarization: -8.28 SS G_CDS: 2.29 Total: -5.99 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.90 Total: 47.46 kcal Atomic # 16 Polarization: -9.39 SS G_CDS: -1.05 Total: -10.44 kcal Total: -76.91 3.18 -73.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194919716.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.746 kcal (2) G-P(sol) polarization free energy of solvation -76.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds