Wall clock time and date at job start Sat Apr 11 2020 05:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34703 * 117.00314 * 2 1 4 4 O 1.21474 * 119.99885 * 0.02562 * 3 2 1 5 5 C 1.47742 * 120.00314 * 180.02562 * 3 2 1 6 6 C 1.39366 * 120.07612 * 355.73224 * 5 3 2 7 7 C 1.39372 * 119.69669 * 180.22658 * 6 5 3 8 8 C 1.47705 * 120.07956 * 179.74288 * 7 6 5 9 9 O 1.21560 * 120.00377 * 321.45602 * 8 7 6 10 10 N 1.34776 * 119.99531 * 141.45336 * 8 7 6 11 11 C 1.37013 * 120.00428 * 1.65856 * 10 8 7 12 12 H 1.08001 * 119.99770 * 323.06675 * 11 10 8 13 13 C 1.38971 * 120.00410 * 143.06471 * 11 10 8 14 14 N 1.31367 * 120.00231 * 160.24126 * 13 11 10 15 15 Si 1.86807 * 119.99873 * 340.24455 * 13 11 10 16 16 H 1.48497 * 109.46931 * 83.79870 * 15 13 11 17 17 H 1.48497 * 109.46987 * 203.80399 * 15 13 11 18 18 H 1.48504 * 109.46939 * 323.80015 * 15 13 11 19 19 C 1.39345 * 119.99795 * 181.65672 * 10 8 7 20 20 C 1.39088 * 119.70170 * 328.20794 * 19 10 8 21 21 C 1.38374 * 119.10157 * 179.76860 * 20 19 10 22 22 C 1.38833 * 118.49167 * 0.45373 * 21 20 19 23 23 C 1.38152 * 119.30990 * 359.52409 * 22 21 20 24 24 N 1.31872 * 120.86078 * 0.25631 * 23 22 21 25 25 C 1.39793 * 119.83901 * 359.47469 * 7 6 5 26 26 C 1.38039 * 120.14940 * 0.27702 * 25 7 6 27 27 C 1.38108 * 120.30983 * 359.97250 * 26 25 7 28 28 C 1.50699 * 119.92175 * 180.02562 * 27 26 25 29 29 H 1.09002 * 109.47174 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46848 * 299.99624 * 1 2 3 31 31 H 1.09001 * 109.47189 * 59.99596 * 1 2 3 32 32 H 1.08004 * 120.14962 * 359.97438 * 6 5 3 33 33 H 0.96997 * 120.00262 * 179.97438 * 14 13 11 34 34 H 1.08005 * 120.44600 * 359.97438 * 20 19 10 35 35 H 1.07999 * 120.75700 * 180.22930 * 21 20 19 36 36 H 1.07994 * 120.34327 * 179.80476 * 22 21 20 37 37 H 1.08009 * 119.56703 * 180.27822 * 23 22 21 38 38 H 1.07999 * 119.92821 * 180.29208 * 25 7 6 39 39 H 1.08000 * 119.84686 * 180.02562 * 26 25 7 40 40 H 1.09000 * 109.46918 * 94.24396 * 28 27 26 41 41 H 1.09001 * 109.47361 * 214.24707 * 28 27 26 42 42 H 1.09001 * 109.46983 * 334.24509 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5390 1.2775 -0.0006 6 6 4.2994 0.1130 0.0886 7 6 5.6907 0.1955 0.0922 8 6 6.5049 -1.0328 0.1921 9 8 6.1483 -1.9411 0.9171 10 7 7.6431 -1.1466 -0.5206 11 6 8.0627 -0.1096 -1.3116 12 1 7.3398 0.4875 -1.8477 13 6 9.4185 0.1741 -1.4242 14 7 9.8599 0.8787 -2.4412 15 14 10.6132 -0.4465 -0.1291 16 1 10.9995 -1.8458 -0.4421 17 1 11.8250 0.4118 -0.1218 18 1 9.9648 -0.3987 1.2060 19 6 8.3932 -2.3190 -0.4530 20 6 8.4119 -3.0582 0.7251 21 6 9.1571 -4.2229 0.7770 22 6 9.8684 -4.6050 -0.3525 23 6 9.8038 -3.8224 -1.4892 24 7 9.0814 -2.7194 -1.5109 25 6 6.3138 1.4431 -0.0047 26 6 5.5542 2.5920 -0.0980 27 6 4.1752 2.5178 -0.0969 28 6 3.3545 3.7776 -0.1997 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 3.8128 -0.8486 0.1588 33 1 10.8062 1.0770 -2.5196 34 1 7.8498 -2.7292 1.5866 35 1 9.1877 -4.8194 1.6768 36 1 10.4623 -5.5069 -0.3440 37 1 10.3519 -4.1181 -2.3716 38 1 7.3918 1.5083 -0.0069 39 1 6.0407 3.5533 -0.1731 40 1 3.0965 3.9589 -1.2431 41 1 2.4422 3.6658 0.3862 42 1 3.9315 4.6193 0.1834 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277787719.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:09 Heat of formation + Delta-G solvation = -35.053698 kcal Electronic energy + Delta-G solvation = -29308.244686 eV Core-core repulsion = 25219.405115 eV Total energy + Delta-G solvation = -4088.839570 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.22371 -41.67595 -40.40033 -39.23661 -37.54329 -37.05474 -34.16654 -33.84732 -33.26333 -32.66120 -31.16689 -29.03380 -28.13763 -27.18777 -25.36551 -24.41861 -24.25001 -22.96791 -22.48671 -21.00976 -20.20411 -19.21604 -18.26228 -17.74733 -17.42420 -17.40330 -17.14363 -17.06584 -16.58239 -16.30222 -15.90073 -15.81327 -15.24993 -15.01439 -14.97413 -14.86275 -14.57710 -14.48312 -14.20533 -13.92544 -13.83289 -13.30172 -13.26101 -13.02736 -12.97591 -12.86679 -12.78720 -12.51402 -12.45140 -12.07871 -11.80808 -11.47746 -11.10721 -10.91528 -10.77022 -10.55266 -10.23375 -10.07135 -9.79996 -9.28971 -8.56693 -6.21479 -0.41497 -0.11123 0.27990 0.45442 1.18626 1.25834 1.30871 1.37399 1.65617 1.76210 2.11018 2.17700 2.67437 2.81536 3.20792 3.57269 3.66752 3.79920 3.81349 3.91872 4.06419 4.21516 4.23774 4.29148 4.30851 4.34038 4.35297 4.46472 4.62460 4.71139 4.72915 4.82729 4.87903 4.89690 5.04795 5.13729 5.16059 5.26483 5.33337 5.37380 5.40033 5.56278 5.79395 5.81135 5.87223 6.17100 6.65105 6.67952 6.98225 7.37300 7.45113 8.53053 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015087 B = 0.003804 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.401532 B = 7358.566008 C = 8664.547933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.365 6.365 3 C 0.519 3.481 4 O -0.513 6.513 5 C -0.161 4.161 6 C -0.012 4.012 7 C -0.147 4.147 8 C 0.528 3.472 9 O -0.577 6.577 10 N -0.402 5.402 11 C -0.351 4.351 12 H 0.097 0.903 13 C 0.077 3.923 14 N -0.872 5.872 15 Si 0.899 3.101 16 H -0.255 1.255 17 H -0.281 1.281 18 H -0.274 1.274 19 C 0.316 3.684 20 C -0.206 4.206 21 C -0.063 4.063 22 C -0.196 4.196 23 C 0.101 3.899 24 N -0.516 5.516 25 C -0.019 4.019 26 C -0.142 4.142 27 C 0.004 3.996 28 C -0.131 4.131 29 H 0.129 0.871 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.138 0.862 33 H 0.281 0.719 34 H 0.136 0.864 35 H 0.170 0.830 36 H 0.176 0.824 37 H 0.177 0.823 38 H 0.143 0.857 39 H 0.164 0.836 40 H 0.081 0.919 41 H 0.097 0.903 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.119 -1.751 5.445 9.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.282 6.282 3 C 0.366 3.634 4 O -0.405 6.405 5 C -0.163 4.163 6 C -0.031 4.031 7 C -0.150 4.150 8 C 0.321 3.679 9 O -0.460 6.460 10 N -0.115 5.115 11 C -0.477 4.477 12 H 0.115 0.885 13 C -0.132 4.132 14 N -0.506 5.506 15 Si 0.724 3.276 16 H -0.179 1.179 17 H -0.208 1.208 18 H -0.199 1.199 19 C 0.089 3.911 20 C -0.229 4.229 21 C -0.089 4.089 22 C -0.216 4.216 23 C -0.058 4.058 24 N -0.230 5.230 25 C -0.038 4.038 26 C -0.160 4.160 27 C 0.003 3.997 28 C -0.186 4.186 29 H 0.147 0.853 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.156 0.844 33 H 0.091 0.909 34 H 0.154 0.846 35 H 0.187 0.813 36 H 0.193 0.807 37 H 0.194 0.806 38 H 0.161 0.839 39 H 0.182 0.818 40 H 0.099 0.901 41 H 0.115 0.885 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.457 -1.250 4.919 9.863 hybrid contribution 0.726 -0.652 0.768 1.242 sum -7.731 -1.901 5.688 9.785 Atomic orbital electron populations 1.23606 0.73925 1.05787 1.03015 1.86581 1.25660 1.32093 1.83824 1.21023 0.88670 0.81591 0.72098 1.90694 1.66999 1.35381 1.47429 1.18846 0.89375 0.94293 1.13746 1.21352 0.91587 0.98633 0.91577 1.19544 0.93443 0.93341 1.08663 1.18743 0.81972 0.87553 0.79655 1.90608 1.72880 1.41979 1.40578 1.41338 1.20368 1.10960 1.38786 1.18884 0.93411 1.09070 1.26321 0.88533 1.25366 0.97627 0.94204 0.95971 1.69759 1.16498 1.37710 1.26665 0.86519 0.80014 0.80264 0.80818 1.17948 1.20760 1.19933 1.18824 0.93731 0.88251 0.90272 1.22206 1.03759 0.98854 0.98102 1.21861 0.92705 0.94173 1.00114 1.22396 1.02677 1.02915 0.93653 1.23080 0.94514 0.88562 0.99617 1.67224 1.09975 1.16990 1.28843 1.22139 1.02123 0.91041 0.88455 1.21281 0.92241 0.99429 1.03031 1.20475 0.94239 0.94439 0.90524 1.21339 1.00669 0.92670 1.03934 0.85332 0.91245 0.91408 0.84423 0.90884 0.84630 0.81292 0.80695 0.80568 0.83915 0.81846 0.90097 0.88501 0.89365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.56 113.37 1.20 1.72 16 2 O -0.37 -9.89 9.82 -56.13 -0.55 -10.44 16 3 C 0.52 15.52 7.86 70.33 0.55 16.07 16 4 O -0.51 -15.46 12.94 19.92 0.26 -15.20 16 5 C -0.16 -5.21 5.87 -20.13 -0.12 -5.32 16 6 C -0.01 -0.45 9.19 22.81 0.21 -0.24 16 7 C -0.15 -6.04 5.32 -20.13 -0.11 -6.15 16 8 C 0.53 24.97 7.15 86.75 0.62 25.59 16 9 O -0.58 -28.07 14.17 -3.91 -0.06 -28.13 16 10 N -0.40 -20.09 2.46 -467.57 -1.15 -21.24 16 11 C -0.35 -18.30 6.58 84.06 0.55 -17.74 16 12 H 0.10 5.28 6.56 -2.91 -0.02 5.26 16 13 C 0.08 4.03 4.96 84.94 0.42 4.45 16 14 N -0.87 -47.41 13.95 21.66 0.30 -47.10 16 15 Si 0.90 42.43 24.93 68.60 1.71 44.14 16 16 H -0.25 -11.78 5.38 99.48 0.54 -11.24 16 17 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 18 H -0.27 -13.19 7.11 99.48 0.71 -12.48 16 19 C 0.32 15.04 3.85 132.93 0.51 15.55 16 20 C -0.21 -8.66 8.35 22.51 0.19 -8.47 16 21 C -0.06 -2.01 10.17 22.44 0.23 -1.78 16 22 C -0.20 -5.72 10.11 22.39 0.23 -5.50 16 23 C 0.10 3.64 10.08 84.67 0.85 4.50 16 24 N -0.52 -23.97 7.82 -192.98 -1.51 -25.47 16 25 C -0.02 -0.72 7.75 22.60 0.18 -0.55 16 26 C -0.14 -4.32 9.65 22.19 0.21 -4.11 16 27 C 0.00 0.11 5.92 -19.53 -0.12 0.00 16 28 C -0.13 -3.08 9.00 71.24 0.64 -2.43 16 29 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.14 4.95 7.60 -2.91 -0.02 4.92 16 33 H 0.28 14.36 8.31 -92.71 -0.77 13.59 16 34 H 0.14 5.94 6.06 -2.91 -0.02 5.92 16 35 H 0.17 3.90 8.06 -2.91 -0.02 3.88 16 36 H 0.18 3.35 8.06 -2.91 -0.02 3.33 16 37 H 0.18 5.07 8.06 -2.91 -0.02 5.05 16 38 H 0.14 5.93 6.09 -2.91 -0.02 5.91 16 39 H 0.16 3.95 8.06 -2.91 -0.02 3.92 16 40 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.10 2.48 5.34 -2.39 -0.01 2.46 16 42 H 0.09 1.64 8.05 -2.39 -0.02 1.62 16 Total: -1.00 -68.43 350.85 6.16 -62.27 By element: Atomic # 1 Polarization: 24.68 SS G_CDS: 0.90 Total: 25.58 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: 6.25 Total: 15.59 kcal Atomic # 7 Polarization: -91.47 SS G_CDS: -2.36 Total: -93.82 kcal Atomic # 8 Polarization: -53.42 SS G_CDS: -0.35 Total: -53.77 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 1.71 Total: 44.14 kcal Total: -68.43 6.16 -62.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277787719.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.221 kcal (2) G-P(sol) polarization free energy of solvation -68.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds