Wall clock time and date at job start Sat Apr 11 2020 05:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30650 * 1 3 3 Si 1.86795 * 120.00118 * 2 1 4 4 H 1.48495 * 109.47266 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47280 * 300.00424 * 3 2 1 6 6 H 1.48500 * 109.47226 * 60.00002 * 3 2 1 7 7 C 1.40224 * 119.99806 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99557 * 197.87768 * 7 2 1 9 9 C 1.41105 * 120.00495 * 17.87108 * 7 2 1 10 10 C 1.40884 * 120.10690 * 204.63078 * 9 7 2 11 11 C 1.36323 * 119.89205 * 180.02562 * 10 9 7 12 12 C 1.40014 * 120.10635 * 0.02562 * 11 10 9 13 13 C 1.47644 * 119.89619 * 179.97438 * 12 11 10 14 14 O 1.21588 * 119.99399 * 359.97438 * 13 12 11 15 15 N 1.34774 * 120.00109 * 179.97438 * 13 12 11 16 16 N 1.40095 * 120.00003 * 180.02562 * 15 13 12 17 17 C 1.34775 * 120.00044 * 180.02562 * 16 15 13 18 18 O 1.21277 * 120.00292 * 359.97438 * 17 16 15 19 19 C 1.50707 * 120.00043 * 179.97438 * 17 16 15 20 20 C 1.50699 * 109.46989 * 179.97438 * 19 17 16 21 21 C 1.38169 * 120.02617 * 265.00292 * 20 19 17 22 22 C 1.38248 * 120.05206 * 179.97438 * 21 20 19 23 23 C 1.38287 * 120.11032 * 0.02562 * 22 21 20 24 24 C 1.38117 * 120.05899 * 0.02562 * 23 22 21 25 25 C 1.38707 * 120.02824 * 84.72803 * 20 19 17 26 26 O 1.35906 * 120.05455 * 359.97438 * 25 20 19 27 27 C 1.40014 * 120.20947 * 0.25276 * 12 11 10 28 28 C 1.36317 * 120.10433 * 359.48329 * 27 12 11 29 29 H 0.96995 * 119.99936 * 0.02562 * 1 2 3 30 30 H 1.07996 * 120.05320 * 0.02562 * 10 9 7 31 31 H 1.07995 * 119.94583 * 179.97438 * 11 10 9 32 32 H 0.96997 * 119.99897 * 0.02562 * 15 13 12 33 33 H 0.96998 * 119.99950 * 359.72399 * 16 15 13 34 34 H 1.09000 * 109.47004 * 300.00126 * 19 17 16 35 35 H 1.09001 * 109.46863 * 59.99776 * 19 17 16 36 36 H 1.07997 * 119.97251 * 359.97111 * 21 20 19 37 37 H 1.08002 * 119.94204 * 179.97438 * 22 21 20 38 38 H 1.08002 * 119.96668 * 179.97438 * 23 22 21 39 39 H 1.08004 * 120.02954 * 179.97438 * 24 23 22 40 40 H 0.96697 * 114.00116 * 90.00445 * 26 25 20 41 41 H 1.07995 * 119.94787 * 179.74489 * 27 12 11 42 42 H 1.08000 * 120.05483 * 180.25452 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 3.7005 1.3463 -0.0006 5 1 1.8817 2.3965 -1.2124 6 1 1.8818 2.3964 1.2125 7 6 2.0076 -1.2144 -0.0005 8 1 3.0485 -1.2371 0.2866 9 6 1.3532 -2.4068 -0.3761 10 6 1.8268 -3.6495 0.0890 11 6 1.1915 -4.7988 -0.2769 12 6 0.0704 -4.7456 -1.1140 13 6 -0.6137 -5.9933 -1.5079 14 8 -0.2030 -7.0647 -1.1058 15 7 -1.6933 -5.9445 -2.3132 16 7 -2.3428 -7.1284 -2.6865 17 6 -3.4221 -7.0797 -3.4922 18 8 -3.8314 -6.0110 -3.8937 19 6 -4.1204 -8.3533 -3.8943 20 6 -5.2872 -8.0252 -4.7897 21 6 -6.5534 -7.8892 -4.2535 22 6 -7.6241 -7.5877 -5.0744 23 6 -7.4311 -7.4220 -6.4337 24 6 -6.1676 -7.5580 -6.9746 25 6 -5.0902 -7.8539 -6.1520 26 8 -3.8447 -7.9811 -6.6808 27 6 -0.4005 -3.5134 -1.5835 28 6 0.2250 -2.3585 -1.2186 29 1 -0.4850 0.8400 -0.0004 30 1 2.6917 -3.6915 0.7344 31 1 1.5540 -5.7519 0.0788 32 1 -2.0206 -5.0898 -2.6343 33 1 -2.0130 -7.9834 -2.3687 34 1 -3.4219 -8.9975 -4.4283 35 1 -4.4801 -8.8673 -3.0029 36 1 -6.7067 -8.0186 -3.1923 37 1 -8.6131 -7.4822 -4.6534 38 1 -8.2693 -7.1869 -7.0728 39 1 -6.0175 -7.4289 -8.0364 40 1 -3.6272 -8.8800 -6.9630 41 1 -1.2630 -3.4777 -2.2323 42 1 -0.1414 -1.4082 -1.5779 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001301572570.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:13 Heat of formation + Delta-G solvation = -42.184017 kcal Electronic energy + Delta-G solvation = -27299.956791 eV Core-core repulsion = 23210.808027 eV Total energy + Delta-G solvation = -4089.148764 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.54225 -39.64229 -38.55213 -37.15538 -36.86607 -34.90309 -33.94631 -33.18638 -31.44869 -30.20748 -29.74629 -29.48841 -27.55029 -25.80733 -22.88539 -22.62769 -21.96855 -21.14183 -20.85051 -19.89324 -18.58443 -17.71311 -17.54052 -17.29505 -16.36834 -16.18708 -16.00212 -15.45602 -15.29836 -15.12123 -14.50042 -14.12918 -14.05057 -14.02134 -13.83373 -13.38571 -13.26015 -12.85101 -12.54806 -12.40402 -12.28851 -12.16227 -12.02346 -11.66052 -11.48107 -11.32076 -11.06382 -10.89721 -10.70293 -10.68058 -10.13501 -10.10418 -9.62383 -9.40816 -9.27431 -9.08522 -8.80826 -8.06701 -7.77094 -7.58787 -7.08863 -4.65963 0.96590 1.07221 2.09273 2.22519 2.58800 2.88262 2.93637 2.98782 2.99584 3.39919 3.70291 3.76089 3.93227 4.31445 4.38651 4.49032 4.55388 4.77080 4.92202 4.95589 5.09617 5.17180 5.33359 5.50867 5.60793 5.69823 5.80781 6.01193 6.08400 6.19059 6.24096 6.24776 6.56069 6.72277 6.77050 6.89770 7.00813 7.05714 7.09882 7.38298 7.42501 7.60334 7.71470 7.80734 8.00690 8.06919 8.19208 8.34470 8.57213 8.68961 8.94543 9.82801 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016814 B = 0.002072 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.898356 B =13510.542564 C =14528.132612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.073 3.927 3 Si 0.915 3.085 4 H -0.257 1.257 5 H -0.268 1.268 6 H -0.271 1.271 7 C -0.436 4.436 8 H 0.087 0.913 9 C 0.129 3.871 10 C -0.238 4.238 11 C -0.016 4.016 12 C -0.281 4.281 13 C 0.575 3.425 14 O -0.578 6.578 15 N -0.536 5.536 16 N -0.521 5.521 17 C 0.512 3.488 18 O -0.533 6.533 19 C -0.085 4.085 20 C -0.093 4.093 21 C -0.090 4.090 22 C -0.129 4.129 23 C -0.103 4.103 24 C -0.147 4.147 25 C 0.124 3.876 26 O -0.492 6.492 27 C -0.062 4.062 28 C -0.176 4.176 29 H 0.288 0.712 30 H 0.100 0.900 31 H 0.103 0.897 32 H 0.429 0.571 33 H 0.427 0.573 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.128 0.872 40 H 0.386 0.614 41 H 0.090 0.910 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.364 -13.454 -9.992 20.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.149 4.149 3 Si 0.738 3.262 4 H -0.180 1.180 5 H -0.193 1.193 6 H -0.196 1.196 7 C -0.464 4.464 8 H 0.105 0.895 9 C 0.126 3.874 10 C -0.258 4.258 11 C -0.036 4.036 12 C -0.287 4.287 13 C 0.371 3.629 14 O -0.459 6.459 15 N -0.286 5.286 16 N -0.268 5.268 17 C 0.298 3.702 18 O -0.407 6.407 19 C -0.126 4.126 20 C -0.094 4.094 21 C -0.108 4.108 22 C -0.147 4.147 23 C -0.121 4.121 24 C -0.165 4.165 25 C 0.080 3.920 26 O -0.302 6.302 27 C -0.081 4.081 28 C -0.195 4.195 29 H 0.099 0.901 30 H 0.118 0.882 31 H 0.121 0.879 32 H 0.272 0.728 33 H 0.268 0.732 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.146 0.854 40 H 0.242 0.758 41 H 0.108 0.892 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -12.545 -12.669 -9.867 20.377 hybrid contribution 0.216 0.342 -0.092 0.415 sum -12.329 -12.327 -9.959 20.078 Atomic orbital electron populations 1.69746 1.07970 1.30210 1.30974 1.26147 0.94844 1.02064 0.91893 0.86142 0.81088 0.80043 0.78940 1.17992 1.19303 1.19603 1.19925 0.98476 0.91144 1.36818 0.89484 1.17820 0.90298 0.92265 0.87059 1.20701 1.04656 0.92502 1.07903 1.20315 0.92550 0.97308 0.93392 1.18573 1.04841 0.89849 1.15452 1.18838 0.77423 0.90567 0.76088 1.90638 1.66513 1.31341 1.57431 1.45158 1.29870 1.00872 1.52668 1.44757 1.28472 1.03090 1.50435 1.20573 0.79493 0.91893 0.78268 1.90753 1.64884 1.30830 1.54263 1.20374 0.96161 0.95599 1.00499 1.19574 0.94145 1.02457 0.93223 1.20947 0.91632 0.98325 0.99895 1.21128 0.99059 1.00789 0.93737 1.21039 0.96656 0.99073 0.95367 1.21396 0.92299 1.02596 1.00259 1.18267 0.84198 0.99112 0.90468 1.84931 1.29342 1.33956 1.81946 1.20507 0.97384 0.92600 0.97600 1.20984 0.99828 0.96947 1.01776 0.90087 0.88151 0.87898 0.72773 0.73182 0.87569 0.87528 0.85559 0.85683 0.85665 0.85408 0.75792 0.89190 0.86036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.31 10.96 55.56 0.61 -17.70 16 2 C 0.07 1.68 5.13 -17.31 -0.09 1.59 16 3 Si 0.91 17.13 29.60 -169.99 -5.03 12.10 16 4 H -0.26 -4.77 7.11 56.52 0.40 -4.36 16 5 H -0.27 -4.97 7.11 56.52 0.40 -4.56 16 6 H -0.27 -5.01 7.11 56.52 0.40 -4.60 16 7 C -0.44 -10.70 9.04 -37.75 -0.34 -11.05 16 8 H 0.09 2.03 7.91 -52.48 -0.42 1.61 16 9 C 0.13 3.25 5.57 -106.80 -0.60 2.66 16 10 C -0.24 -5.65 9.73 -39.27 -0.38 -6.03 16 11 C -0.02 -0.37 9.52 -39.61 -0.38 -0.75 16 12 C -0.28 -6.40 5.89 -104.73 -0.62 -7.02 16 13 C 0.57 12.20 7.88 -12.42 -0.10 12.10 16 14 O -0.58 -13.04 16.16 5.29 0.09 -12.96 16 15 N -0.54 -9.90 6.21 30.48 0.19 -9.71 16 16 N -0.52 -7.89 6.26 31.22 0.20 -7.70 16 17 C 0.51 7.37 7.94 -10.98 -0.09 7.28 16 18 O -0.53 -9.87 15.87 5.56 0.09 -9.78 16 19 C -0.09 -0.80 5.55 -29.03 -0.16 -0.96 16 20 C -0.09 -0.98 4.39 -104.47 -0.46 -1.44 16 21 C -0.09 -0.87 9.68 -39.60 -0.38 -1.25 16 22 C -0.13 -1.13 10.04 -39.56 -0.40 -1.52 16 23 C -0.10 -0.89 10.04 -39.61 -0.40 -1.29 16 24 C -0.15 -1.42 9.99 -39.44 -0.39 -1.81 16 25 C 0.12 1.35 6.68 -39.22 -0.26 1.08 16 26 O -0.49 -5.04 12.65 -19.44 -0.25 -5.28 16 27 C -0.06 -1.39 9.47 -39.61 -0.38 -1.77 16 28 C -0.18 -4.34 8.64 -39.27 -0.34 -4.68 16 29 H 0.29 6.17 8.29 -40.82 -0.34 5.83 16 30 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 31 H 0.10 2.26 7.63 -52.49 -0.40 1.86 16 32 H 0.43 7.96 6.00 -182.60 -1.10 6.87 16 33 H 0.43 5.62 8.00 -182.60 -1.46 4.16 16 34 H 0.11 0.74 7.70 -51.93 -0.40 0.34 16 35 H 0.11 0.70 8.05 -51.93 -0.42 0.28 16 36 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 37 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 38 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 39 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 40 H 0.39 1.80 9.06 45.56 0.41 2.21 16 41 H 0.09 1.82 6.37 -52.49 -0.33 1.48 16 42 H 0.12 3.04 6.16 -52.49 -0.32 2.72 16 LS Contribution 369.68 15.07 5.57 5.57 Total: -1.00 -32.81 369.68 -9.98 -42.79 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: -5.68 Total: 17.53 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: -5.75 Total: -14.87 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: 0.99 Total: -35.10 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: -0.07 Total: -28.03 kcal Atomic # 14 Polarization: 17.13 SS G_CDS: -5.03 Total: 12.10 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.81 -9.98 -42.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001301572570.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.607 kcal (2) G-P(sol) polarization free energy of solvation -32.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds