Wall clock time and date at job start Sat Apr 11 2020 05:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30650 * 1 3 3 Si 1.86795 * 120.00118 * 2 1 4 4 H 1.48495 * 109.47266 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47280 * 300.00424 * 3 2 1 6 6 H 1.48500 * 109.47226 * 60.00002 * 3 2 1 7 7 C 1.40224 * 119.99806 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99557 * 197.87768 * 7 2 1 9 9 C 1.41105 * 120.00495 * 17.87108 * 7 2 1 10 10 C 1.40884 * 120.10690 * 204.63078 * 9 7 2 11 11 C 1.36323 * 119.89205 * 180.02562 * 10 9 7 12 12 C 1.40014 * 120.10635 * 0.02562 * 11 10 9 13 13 C 1.47644 * 119.89619 * 179.97438 * 12 11 10 14 14 O 1.21588 * 119.99399 * 359.97438 * 13 12 11 15 15 N 1.34774 * 120.00109 * 179.97438 * 13 12 11 16 16 N 1.40095 * 120.00003 * 180.02562 * 15 13 12 17 17 C 1.34775 * 120.00044 * 180.02562 * 16 15 13 18 18 O 1.21277 * 120.00292 * 359.97438 * 17 16 15 19 19 C 1.50707 * 120.00043 * 179.97438 * 17 16 15 20 20 C 1.50699 * 109.46989 * 179.97438 * 19 17 16 21 21 C 1.38169 * 120.02617 * 265.00292 * 20 19 17 22 22 C 1.38248 * 120.05206 * 179.97438 * 21 20 19 23 23 C 1.38287 * 120.11032 * 0.02562 * 22 21 20 24 24 C 1.38117 * 120.05899 * 0.02562 * 23 22 21 25 25 C 1.38707 * 120.02824 * 84.72803 * 20 19 17 26 26 O 1.35906 * 120.05455 * 359.97438 * 25 20 19 27 27 C 1.40014 * 120.20947 * 0.25276 * 12 11 10 28 28 C 1.36317 * 120.10433 * 359.48329 * 27 12 11 29 29 H 0.96995 * 119.99936 * 0.02562 * 1 2 3 30 30 H 1.07996 * 120.05320 * 0.02562 * 10 9 7 31 31 H 1.07995 * 119.94583 * 179.97438 * 11 10 9 32 32 H 0.96997 * 119.99897 * 0.02562 * 15 13 12 33 33 H 0.96998 * 119.99950 * 359.72399 * 16 15 13 34 34 H 1.09000 * 109.47004 * 300.00126 * 19 17 16 35 35 H 1.09001 * 109.46863 * 59.99776 * 19 17 16 36 36 H 1.07997 * 119.97251 * 359.97111 * 21 20 19 37 37 H 1.08002 * 119.94204 * 179.97438 * 22 21 20 38 38 H 1.08002 * 119.96668 * 179.97438 * 23 22 21 39 39 H 1.08004 * 120.02954 * 179.97438 * 24 23 22 40 40 H 0.96697 * 114.00116 * 90.00445 * 26 25 20 41 41 H 1.07995 * 119.94787 * 179.74489 * 27 12 11 42 42 H 1.08000 * 120.05483 * 180.25452 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 3.7005 1.3463 -0.0006 5 1 1.8817 2.3965 -1.2124 6 1 1.8818 2.3964 1.2125 7 6 2.0076 -1.2144 -0.0005 8 1 3.0485 -1.2371 0.2866 9 6 1.3532 -2.4068 -0.3761 10 6 1.8268 -3.6495 0.0890 11 6 1.1915 -4.7988 -0.2769 12 6 0.0704 -4.7456 -1.1140 13 6 -0.6137 -5.9933 -1.5079 14 8 -0.2030 -7.0647 -1.1058 15 7 -1.6933 -5.9445 -2.3132 16 7 -2.3428 -7.1284 -2.6865 17 6 -3.4221 -7.0797 -3.4922 18 8 -3.8314 -6.0110 -3.8937 19 6 -4.1204 -8.3533 -3.8943 20 6 -5.2872 -8.0252 -4.7897 21 6 -6.5534 -7.8892 -4.2535 22 6 -7.6241 -7.5877 -5.0744 23 6 -7.4311 -7.4220 -6.4337 24 6 -6.1676 -7.5580 -6.9746 25 6 -5.0902 -7.8539 -6.1520 26 8 -3.8447 -7.9811 -6.6808 27 6 -0.4005 -3.5134 -1.5835 28 6 0.2250 -2.3585 -1.2186 29 1 -0.4850 0.8400 -0.0004 30 1 2.6917 -3.6915 0.7344 31 1 1.5540 -5.7519 0.0788 32 1 -2.0206 -5.0898 -2.6343 33 1 -2.0130 -7.9834 -2.3687 34 1 -3.4219 -8.9975 -4.4283 35 1 -4.4801 -8.8673 -3.0029 36 1 -6.7067 -8.0186 -3.1923 37 1 -8.6131 -7.4822 -4.6534 38 1 -8.2693 -7.1869 -7.0728 39 1 -6.0175 -7.4289 -8.0364 40 1 -3.6272 -8.8800 -6.9630 41 1 -1.2630 -3.4777 -2.2323 42 1 -0.1414 -1.4082 -1.5779 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001301572570.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:12 Heat of formation + Delta-G solvation = -64.204467 kcal Electronic energy + Delta-G solvation = -27300.911670 eV Core-core repulsion = 23210.808027 eV Total energy + Delta-G solvation = -4090.103643 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.60485 -40.84347 -39.91945 -38.89426 -37.56050 -36.35256 -35.72712 -34.05445 -32.91715 -31.47407 -31.30378 -30.78715 -28.51728 -27.46953 -24.11038 -23.55264 -23.19870 -22.76464 -22.23039 -21.31301 -19.41401 -19.29575 -19.01534 -18.70019 -17.46455 -17.16229 -17.11158 -16.92107 -16.32403 -16.05193 -15.96918 -15.76909 -15.47971 -15.20247 -15.09676 -14.72174 -14.54265 -14.06592 -13.96309 -13.75747 -13.34941 -13.24165 -13.12691 -12.96003 -12.88017 -12.71060 -12.43702 -12.34254 -12.26773 -11.79840 -11.42611 -11.38935 -11.38132 -11.15685 -10.94087 -9.80833 -9.68397 -9.57813 -9.50517 -9.30225 -8.83157 -6.51935 0.24068 0.33032 0.38887 0.94840 1.12211 1.33975 1.40005 1.48459 1.55425 2.04492 2.15473 2.68870 2.72277 3.16821 3.30807 3.55727 3.64570 3.85610 3.91664 4.16511 4.19236 4.24142 4.31441 4.42011 4.47473 4.56102 4.68208 4.90289 4.98963 4.99579 5.05595 5.10250 5.23857 5.42867 5.51063 5.51844 5.56874 5.62501 5.65095 5.82245 5.94702 5.95994 5.99488 6.17775 6.50106 6.55367 6.72988 6.83884 6.88710 6.90653 7.40071 8.11822 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016814 B = 0.002072 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.898356 B =13510.542564 C =14528.132612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.035 3.965 3 Si 0.989 3.011 4 H -0.254 1.254 5 H -0.263 1.263 6 H -0.263 1.263 7 C -0.464 4.464 8 H 0.091 0.909 9 C 0.102 3.898 10 C -0.249 4.249 11 C -0.023 4.023 12 C -0.290 4.290 13 C 0.579 3.421 14 O -0.592 6.592 15 N -0.533 5.533 16 N -0.516 5.516 17 C 0.513 3.487 18 O -0.576 6.576 19 C -0.076 4.076 20 C -0.114 4.114 21 C -0.101 4.101 22 C -0.138 4.138 23 C -0.106 4.106 24 C -0.164 4.164 25 C 0.108 3.892 26 O -0.511 6.511 27 C -0.057 4.057 28 C -0.198 4.198 29 H 0.298 0.702 30 H 0.111 0.889 31 H 0.113 0.887 32 H 0.428 0.572 33 H 0.437 0.563 34 H 0.133 0.867 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.147 0.853 38 H 0.148 0.852 39 H 0.137 0.863 40 H 0.407 0.593 41 H 0.110 0.890 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.240 -14.054 -10.388 21.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.185 4.185 3 Si 0.809 3.191 4 H -0.177 1.177 5 H -0.187 1.187 6 H -0.188 1.188 7 C -0.491 4.491 8 H 0.109 0.891 9 C 0.099 3.901 10 C -0.268 4.268 11 C -0.042 4.042 12 C -0.296 4.296 13 C 0.374 3.626 14 O -0.475 6.475 15 N -0.281 5.281 16 N -0.265 5.265 17 C 0.302 3.698 18 O -0.453 6.453 19 C -0.116 4.116 20 C -0.115 4.115 21 C -0.119 4.119 22 C -0.155 4.155 23 C -0.124 4.124 24 C -0.182 4.182 25 C 0.064 3.936 26 O -0.324 6.324 27 C -0.076 4.076 28 C -0.217 4.217 29 H 0.109 0.891 30 H 0.129 0.871 31 H 0.131 0.869 32 H 0.272 0.728 33 H 0.280 0.720 34 H 0.151 0.849 35 H 0.158 0.842 36 H 0.159 0.841 37 H 0.165 0.835 38 H 0.166 0.834 39 H 0.155 0.845 40 H 0.266 0.734 41 H 0.128 0.872 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -13.435 -13.320 -10.274 21.528 hybrid contribution 0.373 0.432 -0.039 0.572 sum -13.062 -12.888 -10.312 21.049 Atomic orbital electron populations 1.69774 1.09390 1.31730 1.31006 1.27005 0.95537 1.05101 0.90809 0.85037 0.79572 0.75324 0.79192 1.17697 1.18709 1.18758 1.20202 0.98891 0.92031 1.37998 0.89121 1.18165 0.90979 0.93243 0.87738 1.20875 1.05240 0.92398 1.08280 1.20492 0.92731 0.97534 0.93453 1.18821 1.04892 0.90728 1.15123 1.18472 0.78008 0.89675 0.76493 1.90622 1.67159 1.31519 1.58189 1.44912 1.29189 1.02432 1.51525 1.45015 1.28586 1.02084 1.50785 1.21600 0.78484 0.93067 0.76675 1.90736 1.65936 1.32964 1.55700 1.20491 0.95970 0.93143 1.02040 1.19770 0.94854 1.03541 0.93354 1.21263 0.91675 0.98054 1.00890 1.21474 0.99975 1.00229 0.93861 1.21383 0.97014 0.98095 0.95864 1.21644 0.92689 1.02983 1.00894 1.18523 0.84526 0.99543 0.91034 1.84865 1.29358 1.36079 1.82074 1.20674 0.97578 0.92087 0.97284 1.20990 1.00686 0.97175 1.02845 0.89119 0.87053 0.86901 0.72848 0.71959 0.84924 0.84191 0.84114 0.83521 0.83387 0.84508 0.73379 0.87177 0.87046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.43 10.96 21.87 0.24 -38.19 16 2 C 0.04 1.62 5.13 85.35 0.44 2.06 16 3 Si 0.99 34.73 29.60 68.60 2.03 36.76 16 4 H -0.25 -8.71 7.11 99.48 0.71 -8.00 16 5 H -0.26 -8.92 7.11 99.48 0.71 -8.22 16 6 H -0.26 -8.85 7.11 99.48 0.71 -8.14 16 7 C -0.46 -23.16 9.04 23.46 0.21 -22.95 16 8 H 0.09 4.29 7.91 -2.91 -0.02 4.27 16 9 C 0.10 5.27 5.57 -21.28 -0.12 5.15 16 10 C -0.25 -11.99 9.73 22.47 0.22 -11.77 16 11 C -0.02 -1.06 9.52 22.25 0.21 -0.85 16 12 C -0.29 -13.23 5.89 -19.93 -0.12 -13.35 16 13 C 0.58 24.22 7.88 86.73 0.68 24.90 16 14 O -0.59 -26.16 16.16 -3.99 -0.06 -26.23 16 15 N -0.53 -19.30 6.21 -175.73 -1.09 -20.39 16 16 N -0.52 -14.87 6.26 -173.53 -1.09 -15.95 16 17 C 0.51 14.01 7.94 87.66 0.70 14.71 16 18 O -0.58 -21.05 15.87 -3.02 -0.05 -21.09 16 19 C -0.08 -1.24 5.55 29.10 0.16 -1.08 16 20 C -0.11 -2.23 4.39 -19.77 -0.09 -2.32 16 21 C -0.10 -1.76 9.68 22.26 0.22 -1.55 16 22 C -0.14 -2.14 10.04 22.28 0.22 -1.92 16 23 C -0.11 -1.65 10.04 22.25 0.22 -1.42 16 24 C -0.16 -3.00 9.99 22.36 0.22 -2.78 16 25 C 0.11 2.23 6.68 22.51 0.15 2.38 16 26 O -0.51 -9.95 12.65 -92.49 -1.17 -11.12 16 27 C -0.06 -2.61 9.47 22.25 0.21 -2.40 16 28 C -0.20 -9.98 8.64 22.47 0.19 -9.79 16 29 H 0.30 12.78 8.29 -92.71 -0.77 12.01 16 30 H 0.11 4.96 8.06 -2.91 -0.02 4.93 16 31 H 0.11 4.94 7.63 -2.91 -0.02 4.92 16 32 H 0.43 15.75 6.00 -213.33 -1.28 14.47 16 33 H 0.44 10.65 8.00 -213.33 -1.71 8.94 16 34 H 0.13 1.46 7.70 -2.39 -0.02 1.44 16 35 H 0.14 1.35 8.05 -2.39 -0.02 1.33 16 36 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 37 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 38 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 39 H 0.14 2.10 8.06 -2.91 -0.02 2.07 16 40 H 0.41 3.27 9.06 -74.06 -0.67 2.60 16 41 H 0.11 4.47 6.37 -2.91 -0.02 4.45 16 42 H 0.11 5.77 6.16 -2.91 -0.02 5.75 16 Total: -1.00 -71.48 369.68 0.01 -71.47 By element: Atomic # 1 Polarization: 50.24 SS G_CDS: -2.54 Total: 47.69 kcal Atomic # 6 Polarization: -26.70 SS G_CDS: 3.74 Total: -22.96 kcal Atomic # 7 Polarization: -72.59 SS G_CDS: -1.94 Total: -74.52 kcal Atomic # 8 Polarization: -57.16 SS G_CDS: -1.28 Total: -58.44 kcal Atomic # 14 Polarization: 34.73 SS G_CDS: 2.03 Total: 36.76 kcal Total: -71.48 0.01 -71.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001301572570.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.263 kcal (2) G-P(sol) polarization free energy of solvation -71.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds