Wall clock time and date at job start Sat Apr 11 2020 05:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99602 * 2 1 4 4 H 1.48500 * 109.47430 * 240.00302 * 3 2 1 5 5 H 1.48500 * 109.47524 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46976 * 120.00780 * 3 2 1 7 7 C 1.37870 * 120.00441 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00080 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00175 * 359.97438 * 7 2 1 10 10 O 1.42906 * 113.25141 * 312.95380 * 9 7 2 11 11 C 1.53509 * 114.17332 * 180.02562 * 9 7 2 12 12 N 1.47481 * 87.93288 * 220.13782 * 11 9 7 13 13 C 1.46902 * 111.00274 * 138.70304 * 12 11 9 14 14 C 1.47198 * 109.47084 * 170.00155 * 13 12 11 15 15 C 7.44343 * 81.35293 * 207.64850 * 2 1 3 16 16 C 8.68528 * 76.15404 * 209.86232 * 2 1 3 17 17 N 1.46493 * 109.47561 * 287.39148 * 16 15 14 18 18 C 1.34525 * 124.46165 * 269.98463 * 17 16 15 19 19 O 1.21448 * 125.71259 * 0.03301 * 18 17 16 20 20 C 1.47821 * 108.58246 * 180.02562 * 18 17 16 21 21 C 1.38564 * 134.29568 * 180.02562 * 20 18 17 22 22 C 1.38613 * 119.71574 * 180.20994 * 21 20 18 23 23 C 1.38220 * 120.45711 * 359.50655 * 22 21 20 24 24 C 1.38614 * 120.46568 * 0.47968 * 23 22 21 25 25 C 1.38568 * 119.71701 * 359.76831 * 24 23 22 26 26 C 1.34525 * 124.46176 * 90.00086 * 17 16 15 27 27 O 1.21446 * 125.70834 * 0.02562 * 26 17 16 28 28 C 1.47484 * 87.83907 * 27.00783 * 12 11 9 29 29 H 0.96998 * 120.00074 * 359.97438 * 1 2 3 30 30 H 0.96697 * 114.00265 * 47.04708 * 10 9 7 31 31 H 1.09005 * 113.47722 * 105.37408 * 11 9 7 32 32 H 1.08999 * 113.53126 * 334.91090 * 11 9 7 33 33 H 1.08994 * 109.46975 * 50.00063 * 13 12 11 34 34 H 1.08994 * 109.46712 * 289.99766 * 13 12 11 35 35 H 1.09002 * 109.46546 * 167.39147 * 16 15 14 36 36 H 1.09004 * 109.47492 * 47.39985 * 16 15 14 37 37 H 1.08002 * 120.13758 * 359.92268 * 21 20 18 38 38 H 1.07998 * 119.76663 * 179.72326 * 22 21 20 39 39 H 1.08001 * 119.76807 * 180.24655 * 23 22 21 40 40 H 1.07994 * 120.14144 * 179.74580 * 24 23 22 41 41 H 1.09000 * 113.47263 * 87.75445 * 28 12 11 42 42 H 1.08995 * 113.48424 * 218.22654 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 8 0.1947 -2.5407 0.9609 11 6 2.1499 -3.7437 -0.0005 12 7 1.2053 -4.3601 -0.9506 13 6 1.9208 -5.0901 -2.0057 14 6 0.9614 -5.8849 -2.7896 15 6 0.1960 -6.5185 -3.4148 16 6 -0.7634 -7.3132 -4.1989 17 7 -1.8857 -7.7068 -3.3436 18 6 -1.9298 -8.8393 -2.6188 19 8 -1.0587 -9.6841 -2.5701 20 6 -3.2159 -8.8832 -1.8914 21 6 -3.8018 -9.7827 -1.0153 22 6 -5.0609 -9.5184 -0.4993 23 6 -5.7306 -8.3597 -0.8449 24 6 -5.1568 -7.4506 -1.7199 25 6 -3.9008 -7.7040 -2.2476 26 6 -3.0081 -6.9836 -3.1798 27 8 -3.2480 -5.9175 -3.7097 28 6 0.8518 -2.9993 -1.3959 29 1 -0.4850 0.8400 0.0004 30 1 -0.3698 -1.7556 0.9591 31 1 2.1892 -4.2509 0.9635 32 1 3.1384 -3.5666 -0.4243 33 1 2.6577 -5.7534 -1.5529 34 1 2.4251 -4.3799 -2.6608 35 1 -0.2683 -8.2055 -4.5822 36 1 -1.1337 -6.7167 -5.0327 37 1 -3.2817 -10.6880 -0.7393 38 1 -5.5202 -10.2210 0.1802 39 1 -6.7095 -8.1630 -0.4331 40 1 -5.6864 -6.5489 -1.9895 41 1 1.4937 -2.6226 -2.1923 42 1 -0.2088 -2.8755 -1.6144 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307709617.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:15 Heat of formation + Delta-G solvation = 35.760156 kcal Electronic energy + Delta-G solvation = -27923.569326 eV Core-core repulsion = 23837.800474 eV Total energy + Delta-G solvation = -4085.768851 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.48358 -39.23302 -38.78195 -38.75866 -36.14641 -34.79629 -33.81082 -32.12756 -31.94609 -31.47488 -29.51024 -27.42785 -25.73821 -25.33041 -24.93179 -23.49690 -22.44160 -22.31845 -20.24992 -18.68117 -18.02291 -17.87047 -17.44581 -17.19140 -16.67611 -15.79836 -15.54014 -15.16605 -15.08033 -14.95142 -14.67361 -14.57831 -14.34750 -14.13200 -14.11024 -13.98496 -13.55990 -13.01832 -12.92697 -12.67275 -12.09569 -12.06583 -11.98302 -11.54141 -11.30123 -11.00071 -10.92651 -10.79247 -10.51866 -10.40435 -10.23664 -10.10246 -10.00363 -9.56790 -9.55781 -9.54095 -9.25628 -8.66411 -8.25711 -7.95931 -6.28467 -4.38950 -0.20176 0.63417 1.77561 1.84724 2.75749 2.83718 3.07830 3.20104 3.25824 3.27123 3.27908 3.39236 4.06925 4.22102 4.25287 4.27628 4.51655 4.71451 4.87067 4.89534 4.91893 5.03977 5.06745 5.11123 5.36967 5.44687 5.51776 5.59802 5.66233 5.75641 5.77164 5.83395 5.92582 6.05064 6.23073 6.25833 6.32399 6.45978 6.64296 7.01745 7.01940 7.08775 7.30960 7.46684 7.72809 7.74520 7.88436 7.97783 8.63111 9.31348 9.66728 10.77720 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014007 B = 0.002592 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.508013 B =10800.836692 C =11617.997865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.071 3.929 3 Si 0.906 3.094 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.067 0.933 9 C 0.250 3.750 10 O -0.570 6.570 11 C 0.004 3.996 12 N -0.469 5.469 13 C 0.116 3.884 14 C -0.092 4.092 15 C -0.247 4.247 16 C 0.242 3.758 17 N -0.574 5.574 18 C 0.578 3.422 19 O -0.462 6.462 20 C -0.138 4.138 21 C -0.045 4.045 22 C -0.098 4.098 23 C -0.095 4.095 24 C -0.044 4.044 25 C -0.134 4.134 26 C 0.575 3.425 27 O -0.452 6.452 28 C -0.022 4.022 29 H 0.273 0.727 30 H 0.391 0.609 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.142 0.858 38 H 0.142 0.858 39 H 0.142 0.858 40 H 0.144 0.856 41 H 0.062 0.938 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.985 -18.367 -5.433 21.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.131 4.131 3 Si 0.733 3.267 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.575 4.575 8 H 0.085 0.915 9 C 0.208 3.792 10 O -0.382 6.382 11 C -0.124 4.124 12 N -0.192 5.192 13 C -0.011 4.011 14 C -0.094 4.094 15 C -0.249 4.249 16 C 0.124 3.876 17 N -0.316 5.316 18 C 0.367 3.633 19 O -0.333 6.333 20 C -0.142 4.142 21 C -0.064 4.064 22 C -0.116 4.116 23 C -0.114 4.114 24 C -0.063 4.063 25 C -0.138 4.138 26 C 0.363 3.637 27 O -0.321 6.321 28 C -0.151 4.151 29 H 0.083 0.917 30 H 0.246 0.754 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.109 0.891 34 H 0.088 0.912 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.160 0.840 38 H 0.159 0.841 39 H 0.160 0.840 40 H 0.161 0.839 41 H 0.080 0.920 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.987 -19.153 -5.416 22.268 hybrid contribution 0.976 1.947 -0.631 2.267 sum -9.010 -17.206 -6.046 20.341 Atomic orbital electron populations 1.69288 1.06150 1.28033 1.50240 1.25078 0.94996 0.99756 0.93304 0.86430 0.79516 0.81917 0.78841 1.20030 1.20972 1.19899 1.21520 0.93650 0.90428 1.51886 0.91475 1.19320 0.85071 0.90567 0.84232 1.86029 1.45266 1.48161 1.58770 1.24114 0.95314 0.96464 0.96534 1.68986 1.26749 1.14222 1.09194 1.19823 0.92038 0.96094 0.93143 1.22434 0.96347 0.96836 0.93767 1.21930 0.98838 1.01182 1.02947 1.18254 0.81722 0.98270 0.89386 1.46589 1.18562 1.21843 1.44574 1.18363 0.86421 0.80500 0.77989 1.90801 1.42133 1.39801 1.60551 1.20556 0.95346 0.97303 1.01000 1.20797 0.94372 0.98190 0.93058 1.21460 0.93958 0.97417 0.98768 1.21478 1.00449 0.93352 0.96076 1.20847 0.92208 0.99360 0.93861 1.20563 0.96565 0.96306 1.00353 1.18381 0.81119 0.83699 0.80460 1.90841 1.75655 1.18419 1.47218 1.24840 1.01232 0.86984 1.02056 0.91687 0.75360 0.90723 0.91401 0.89095 0.91219 0.86678 0.86607 0.84030 0.84051 0.83989 0.83856 0.91969 0.91248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.33 11.02 55.43 0.61 -23.72 16 2 C 0.07 1.88 5.39 -17.82 -0.10 1.78 16 3 Si 0.91 20.37 29.54 -169.99 -5.02 15.35 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.54 -14.32 8.69 -34.44 -0.30 -14.62 16 8 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 9 C 0.25 6.45 1.56 -91.24 -0.14 6.31 16 10 O -0.57 -15.85 13.53 -35.23 -0.48 -16.33 16 11 C 0.00 0.09 7.09 -7.53 -0.05 0.04 16 12 N -0.47 -10.35 6.29 -248.13 -1.56 -11.92 16 13 C 0.12 2.11 5.29 -6.61 -0.03 2.07 16 14 C -0.09 -1.69 13.68 -37.12 -0.51 -2.20 16 15 C -0.25 -4.17 13.68 -37.12 -0.51 -4.68 16 16 C 0.24 3.14 6.22 -6.83 -0.04 3.10 16 17 N -0.57 -8.03 2.58 -120.75 -0.31 -8.34 16 18 C 0.58 7.93 8.02 -12.45 -0.10 7.83 16 19 O -0.46 -7.15 17.68 5.41 0.10 -7.05 16 20 C -0.14 -1.58 6.40 -104.83 -0.67 -2.25 16 21 C -0.05 -0.38 10.09 -39.32 -0.40 -0.77 16 22 C -0.10 -0.59 10.04 -39.45 -0.40 -0.99 16 23 C -0.10 -0.60 10.03 -39.45 -0.40 -1.00 16 24 C -0.04 -0.40 10.09 -39.32 -0.40 -0.79 16 25 C -0.13 -1.59 6.41 -104.83 -0.67 -2.26 16 26 C 0.57 8.37 8.02 -12.46 -0.10 8.27 16 27 O -0.45 -7.75 17.68 5.41 0.10 -7.66 16 28 C -0.02 -0.53 7.13 -7.53 -0.05 -0.58 16 29 H 0.27 7.01 8.31 -40.82 -0.34 6.68 16 30 H 0.39 11.01 6.33 45.56 0.29 11.30 16 31 H 0.07 1.63 8.14 -51.93 -0.42 1.20 16 32 H 0.07 1.35 7.87 -51.93 -0.41 0.94 16 33 H 0.09 1.44 8.08 -51.93 -0.42 1.02 16 34 H 0.07 1.18 7.30 -51.93 -0.38 0.80 16 35 H 0.12 1.20 7.97 -51.93 -0.41 0.79 16 36 H 0.12 1.29 7.97 -51.93 -0.41 0.88 16 37 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 38 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16 39 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 40 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 41 H 0.06 1.44 7.38 -51.93 -0.38 1.06 16 42 H 0.07 1.81 8.14 -51.93 -0.42 1.39 16 LS Contribution 375.02 15.07 5.65 5.65 Total: -1.00 -33.52 375.02 -9.99 -43.52 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -4.21 Total: 11.25 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -4.87 Total: -0.76 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: -1.26 Total: -43.97 kcal Atomic # 8 Polarization: -30.75 SS G_CDS: -0.29 Total: -31.04 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.52 -9.99 -43.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307709617.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.277 kcal (2) G-P(sol) polarization free energy of solvation -33.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds