Wall clock time and date at job start Sat Apr 11 2020 05:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99602 * 2 1 4 4 H 1.48500 * 109.47430 * 240.00302 * 3 2 1 5 5 H 1.48500 * 109.47524 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46976 * 120.00780 * 3 2 1 7 7 C 1.37870 * 120.00441 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00080 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00175 * 359.97438 * 7 2 1 10 10 O 1.42906 * 113.25141 * 312.95380 * 9 7 2 11 11 C 1.53509 * 114.17332 * 180.02562 * 9 7 2 12 12 N 1.47481 * 87.93288 * 220.13782 * 11 9 7 13 13 C 1.46902 * 111.00274 * 138.70304 * 12 11 9 14 14 C 1.47198 * 109.47084 * 170.00155 * 13 12 11 15 15 C 7.44343 * 81.35293 * 207.64850 * 2 1 3 16 16 C 8.68528 * 76.15404 * 209.86232 * 2 1 3 17 17 N 1.46493 * 109.47561 * 287.39148 * 16 15 14 18 18 C 1.34525 * 124.46165 * 269.98463 * 17 16 15 19 19 O 1.21448 * 125.71259 * 0.03301 * 18 17 16 20 20 C 1.47821 * 108.58246 * 180.02562 * 18 17 16 21 21 C 1.38564 * 134.29568 * 180.02562 * 20 18 17 22 22 C 1.38613 * 119.71574 * 180.20994 * 21 20 18 23 23 C 1.38220 * 120.45711 * 359.50655 * 22 21 20 24 24 C 1.38614 * 120.46568 * 0.47968 * 23 22 21 25 25 C 1.38568 * 119.71701 * 359.76831 * 24 23 22 26 26 C 1.34525 * 124.46176 * 90.00086 * 17 16 15 27 27 O 1.21446 * 125.70834 * 0.02562 * 26 17 16 28 28 C 1.47484 * 87.83907 * 27.00783 * 12 11 9 29 29 H 0.96998 * 120.00074 * 359.97438 * 1 2 3 30 30 H 0.96697 * 114.00265 * 47.04708 * 10 9 7 31 31 H 1.09005 * 113.47722 * 105.37408 * 11 9 7 32 32 H 1.08999 * 113.53126 * 334.91090 * 11 9 7 33 33 H 1.08994 * 109.46975 * 50.00063 * 13 12 11 34 34 H 1.08994 * 109.46712 * 289.99766 * 13 12 11 35 35 H 1.09002 * 109.46546 * 167.39147 * 16 15 14 36 36 H 1.09004 * 109.47492 * 47.39985 * 16 15 14 37 37 H 1.08002 * 120.13758 * 359.92268 * 21 20 18 38 38 H 1.07998 * 119.76663 * 179.72326 * 22 21 20 39 39 H 1.08001 * 119.76807 * 180.24655 * 23 22 21 40 40 H 1.07994 * 120.14144 * 179.74580 * 24 23 22 41 41 H 1.09000 * 113.47263 * 87.75445 * 28 12 11 42 42 H 1.08995 * 113.48424 * 218.22654 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 8 0.1947 -2.5407 0.9609 11 6 2.1499 -3.7437 -0.0005 12 7 1.2053 -4.3601 -0.9506 13 6 1.9208 -5.0901 -2.0057 14 6 0.9614 -5.8849 -2.7896 15 6 0.1960 -6.5185 -3.4148 16 6 -0.7634 -7.3132 -4.1989 17 7 -1.8857 -7.7068 -3.3436 18 6 -1.9298 -8.8393 -2.6188 19 8 -1.0587 -9.6841 -2.5701 20 6 -3.2159 -8.8832 -1.8914 21 6 -3.8018 -9.7827 -1.0153 22 6 -5.0609 -9.5184 -0.4993 23 6 -5.7306 -8.3597 -0.8449 24 6 -5.1568 -7.4506 -1.7199 25 6 -3.9008 -7.7040 -2.2476 26 6 -3.0081 -6.9836 -3.1798 27 8 -3.2480 -5.9175 -3.7097 28 6 0.8518 -2.9993 -1.3959 29 1 -0.4850 0.8400 0.0004 30 1 -0.3698 -1.7556 0.9591 31 1 2.1892 -4.2509 0.9635 32 1 3.1384 -3.5666 -0.4243 33 1 2.6577 -5.7534 -1.5529 34 1 2.4251 -4.3799 -2.6608 35 1 -0.2683 -8.2055 -4.5822 36 1 -1.1337 -6.7167 -5.0327 37 1 -3.2817 -10.6880 -0.7393 38 1 -5.5202 -10.2210 0.1802 39 1 -6.7095 -8.1630 -0.4331 40 1 -5.6864 -6.5489 -1.9895 41 1 1.4937 -2.6226 -2.1923 42 1 -0.2088 -2.8755 -1.6144 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307709617.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:15 Heat of formation + Delta-G solvation = 11.055461 kcal Electronic energy + Delta-G solvation = -27924.640601 eV Core-core repulsion = 23837.800474 eV Total energy + Delta-G solvation = -4086.840127 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.46357 -41.05547 -39.89454 -39.52280 -37.29161 -36.60349 -35.15021 -34.13433 -33.11494 -32.13934 -30.89010 -28.83878 -27.42117 -26.77871 -26.28268 -24.52326 -23.85224 -23.28084 -21.17023 -20.60282 -19.46853 -18.87320 -18.86249 -18.39095 -17.56229 -17.22304 -16.95883 -16.86405 -16.52381 -16.25485 -15.86102 -15.70822 -15.48397 -15.42361 -15.27663 -15.06175 -14.86878 -14.55152 -13.96666 -13.77781 -13.66620 -13.41203 -13.26408 -13.14738 -12.84890 -12.74681 -12.63698 -12.24867 -12.11460 -11.90922 -11.58394 -11.48604 -11.34970 -11.09570 -10.90290 -10.65678 -10.23573 -10.23043 -10.16045 -9.81908 -8.27845 -6.46582 -1.06875 -0.03403 0.73088 0.93271 1.42962 1.44283 1.47537 1.52961 1.71029 1.79396 2.35937 2.51945 2.61907 2.92592 2.95017 3.13328 3.29090 3.57084 3.91979 3.98351 4.02912 4.04032 4.06319 4.10824 4.17068 4.22156 4.33362 4.36082 4.43107 4.46975 4.50830 4.55217 4.82484 4.82730 4.91299 5.05169 5.20076 5.25545 5.30850 5.32319 5.42241 5.69014 5.71462 5.91092 5.97369 6.14287 6.37106 6.42621 6.60224 7.26990 7.50031 8.77783 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014007 B = 0.002592 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.508013 B =10800.836692 C =11617.997865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.023 3.977 3 Si 0.973 3.027 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.557 4.557 8 H 0.074 0.926 9 C 0.222 3.778 10 O -0.585 6.585 11 C 0.017 3.983 12 N -0.483 5.483 13 C 0.119 3.881 14 C -0.138 4.138 15 C -0.235 4.235 16 C 0.233 3.767 17 N -0.579 5.579 18 C 0.576 3.424 19 O -0.488 6.488 20 C -0.161 4.161 21 C -0.043 4.043 22 C -0.081 4.081 23 C -0.082 4.082 24 C -0.049 4.049 25 C -0.163 4.163 26 C 0.569 3.431 27 O -0.493 6.493 28 C -0.011 4.011 29 H 0.275 0.725 30 H 0.384 0.616 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.116 0.884 34 H 0.083 0.917 35 H 0.143 0.857 36 H 0.132 0.868 37 H 0.160 0.840 38 H 0.185 0.815 39 H 0.182 0.818 40 H 0.150 0.850 41 H 0.069 0.931 42 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.595 -19.733 -4.611 22.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.176 4.176 3 Si 0.798 3.202 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.595 4.595 8 H 0.092 0.908 9 C 0.180 3.820 10 O -0.397 6.397 11 C -0.111 4.111 12 N -0.205 5.205 13 C -0.008 4.008 14 C -0.140 4.140 15 C -0.237 4.237 16 C 0.114 3.886 17 N -0.320 5.320 18 C 0.367 3.633 19 O -0.361 6.361 20 C -0.164 4.164 21 C -0.061 4.061 22 C -0.098 4.098 23 C -0.100 4.100 24 C -0.068 4.068 25 C -0.167 4.167 26 C 0.360 3.640 27 O -0.367 6.367 28 C -0.141 4.141 29 H 0.084 0.916 30 H 0.239 0.761 31 H 0.094 0.906 32 H 0.111 0.889 33 H 0.134 0.866 34 H 0.101 0.899 35 H 0.160 0.840 36 H 0.150 0.850 37 H 0.177 0.823 38 H 0.202 0.798 39 H 0.199 0.801 40 H 0.168 0.832 41 H 0.087 0.913 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -10.588 -20.551 -4.590 23.570 hybrid contribution 1.033 2.244 -0.857 2.615 sum -9.555 -18.307 -5.447 21.357 Atomic orbital electron populations 1.69384 1.07481 1.28842 1.50621 1.25908 0.95789 1.03130 0.92788 0.85376 0.78205 0.77609 0.79050 1.19269 1.20762 1.19368 1.21818 0.94109 0.91214 1.52337 0.90811 1.19719 0.85434 0.92200 0.84610 1.86009 1.45942 1.47904 1.59817 1.24034 0.95733 0.94400 0.96915 1.68849 1.27988 1.13176 1.10505 1.19865 0.92145 0.96316 0.92452 1.22735 0.97840 0.98263 0.95145 1.22802 0.98170 1.00539 1.02215 1.18632 0.81381 0.99307 0.89240 1.46692 1.18546 1.22078 1.44734 1.18794 0.87081 0.79818 0.77616 1.90770 1.43242 1.40491 1.61575 1.20536 0.94424 0.98528 1.02940 1.21212 0.95257 0.97966 0.91713 1.21998 0.92516 0.97605 0.97707 1.21975 1.01602 0.92269 0.94125 1.21190 0.91200 1.00373 0.94011 1.20520 0.97925 0.96678 1.01565 1.18950 0.81600 0.83210 0.80202 1.90800 1.76585 1.20140 1.49140 1.24618 0.99286 0.88684 1.01506 0.91556 0.76149 0.90565 0.88859 0.86622 0.89943 0.83963 0.85019 0.82283 0.79762 0.80106 0.83234 0.91306 0.94489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.99 11.02 21.44 0.24 -50.75 16 2 C 0.02 1.24 5.39 84.65 0.46 1.70 16 3 Si 0.97 41.59 29.54 68.60 2.03 43.62 16 4 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 6 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 7 C -0.56 -29.77 8.69 25.60 0.22 -29.55 16 8 H 0.07 3.74 7.81 -2.91 -0.02 3.72 16 9 C 0.22 11.60 1.56 -11.19 -0.02 11.58 16 10 O -0.58 -33.52 13.53 -148.98 -2.02 -35.54 16 11 C 0.02 0.76 7.09 83.58 0.59 1.35 16 12 N -0.48 -21.45 6.29 -939.32 -5.91 -27.36 16 13 C 0.12 4.26 5.29 84.50 0.45 4.71 16 14 C -0.14 -5.15 13.68 31.13 0.43 -4.73 16 15 C -0.23 -8.10 13.68 31.13 0.43 -7.67 16 16 C 0.23 6.17 6.22 84.57 0.53 6.70 16 17 N -0.58 -16.81 2.58 -772.88 -1.99 -18.81 16 18 C 0.58 16.12 8.02 86.82 0.70 16.82 16 19 O -0.49 -15.29 17.68 -3.55 -0.06 -15.36 16 20 C -0.16 -3.60 6.40 -20.00 -0.13 -3.73 16 21 C -0.04 -0.61 10.09 22.44 0.23 -0.38 16 22 C -0.08 -0.63 10.04 22.35 0.22 -0.40 16 23 C -0.08 -0.73 10.03 22.36 0.22 -0.50 16 24 C -0.05 -0.82 10.09 22.44 0.23 -0.59 16 25 C -0.16 -3.91 6.41 -20.00 -0.13 -4.04 16 26 C 0.57 17.46 8.02 86.82 0.70 18.16 16 27 O -0.49 -18.06 17.68 -3.55 -0.06 -18.12 16 28 C -0.01 -0.56 7.13 83.58 0.60 0.03 16 29 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 30 H 0.38 22.51 6.33 -74.06 -0.47 22.04 16 31 H 0.08 3.27 8.14 -2.38 -0.02 3.25 16 32 H 0.09 3.55 7.87 -2.39 -0.02 3.53 16 33 H 0.12 3.51 8.08 -2.39 -0.02 3.49 16 34 H 0.08 2.73 7.30 -2.39 -0.02 2.71 16 35 H 0.14 2.94 7.97 -2.39 -0.02 2.92 16 36 H 0.13 3.03 7.97 -2.39 -0.02 3.01 16 37 H 0.16 1.63 8.06 -2.91 -0.02 1.61 16 38 H 0.19 -0.07 8.06 -2.91 -0.02 -0.09 16 39 H 0.18 0.24 8.06 -2.91 -0.02 0.22 16 40 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 41 H 0.07 3.24 7.38 -2.39 -0.02 3.22 16 42 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -76.03 375.02 -1.46 -77.49 By element: Atomic # 1 Polarization: 34.76 SS G_CDS: 0.61 Total: 35.38 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: 5.71 Total: 9.45 kcal Atomic # 7 Polarization: -89.25 SS G_CDS: -7.67 Total: -96.92 kcal Atomic # 8 Polarization: -66.88 SS G_CDS: -2.14 Total: -69.02 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Total: -76.03 -1.46 -77.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307709617.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.544 kcal (2) G-P(sol) polarization free energy of solvation -76.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds