Wall clock time and date at job start Sat Apr 11 2020 05:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86793 * 120.00022 * 2 1 4 4 H 1.48501 * 109.47156 * 270.00068 * 3 2 1 5 5 H 1.48506 * 109.47033 * 29.99812 * 3 2 1 6 6 H 1.48494 * 109.47164 * 149.99884 * 3 2 1 7 7 C 1.38657 * 119.99528 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.98965 * 180.02562 * 7 2 1 9 9 O 1.34822 * 120.00561 * 359.97438 * 7 2 1 10 10 C 1.35749 * 117.00341 * 185.02306 * 9 7 2 11 11 C 1.38961 * 120.02758 * 354.35472 * 10 9 7 12 12 C 1.38144 * 120.07914 * 179.71440 * 11 10 9 13 13 C 1.38184 * 120.14436 * 0.55913 * 12 11 10 14 14 C 1.38972 * 120.06171 * 359.71520 * 13 12 11 15 15 N 1.39726 * 120.04581 * 179.97438 * 14 13 12 16 16 C 1.34775 * 120.00179 * 215.16336 * 15 14 13 17 17 O 1.21372 * 119.99934 * 355.49130 * 16 15 14 18 18 C 1.49354 * 119.99657 * 175.49651 * 16 15 14 19 19 O 1.21364 * 120.00159 * 0.02562 * 18 16 15 20 20 N 1.34775 * 119.99650 * 179.97438 * 18 16 15 21 21 C 1.46507 * 119.99630 * 180.02562 * 20 18 16 22 22 H 1.08992 * 109.47213 * 324.99766 * 21 20 18 23 23 C 1.53001 * 109.47197 * 85.00530 * 21 20 18 24 24 O 1.42893 * 109.47676 * 64.99493 * 23 21 20 25 25 C 1.53004 * 109.46615 * 204.99828 * 21 20 18 26 26 C 1.53000 * 109.47105 * 65.00141 * 25 21 20 27 27 F 1.39901 * 109.47102 * 179.97438 * 26 25 21 28 28 C 1.38720 * 120.03124 * 174.62275 * 10 9 7 29 29 H 0.96994 * 120.00416 * 0.02562 * 1 2 3 30 30 H 1.07999 * 119.96243 * 359.97438 * 11 10 9 31 31 H 1.08001 * 119.92232 * 180.25457 * 12 11 10 32 32 H 1.07994 * 119.96635 * 179.74416 * 13 12 11 33 33 H 0.96999 * 119.99463 * 35.15358 * 15 14 13 34 34 H 0.97002 * 120.00640 * 0.02562 * 20 18 16 35 35 H 1.08997 * 109.46742 * 185.00046 * 23 21 20 36 36 H 1.09004 * 109.46354 * 304.99370 * 23 21 20 37 37 H 0.96696 * 114.00433 * 179.97438 * 24 23 21 38 38 H 1.09003 * 109.46795 * 184.99443 * 25 21 20 39 39 H 1.08993 * 109.47774 * 304.99905 * 25 21 20 40 40 H 1.08995 * 109.47257 * 299.99668 * 26 25 21 41 41 H 1.09005 * 109.47156 * 59.99653 * 26 25 21 42 42 H 1.07994 * 120.07181 * 359.97438 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4469 2.6526 0.7000 6 1 3.5471 1.4401 0.7000 7 6 2.0088 -1.2009 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3347 -2.3685 0.0016 10 6 2.0700 -3.5046 0.1080 11 6 3.4579 -3.4387 0.0913 12 6 4.2073 -4.5936 0.2054 13 6 3.5799 -5.8190 0.3248 14 6 2.1921 -5.8923 0.3364 15 7 1.5580 -7.1316 0.4567 16 6 0.3997 -7.3618 -0.1928 17 8 -0.1348 -6.4676 -0.8156 18 6 -0.2260 -8.7171 -0.1460 19 8 0.3083 -9.6110 0.4772 20 7 -1.3845 -8.9471 -0.7951 21 6 -1.9986 -10.2765 -0.7487 22 1 -1.2181 -11.0371 -0.7360 23 6 -2.8521 -10.4002 0.5151 24 8 -3.9443 -9.4815 0.4442 25 6 -2.8824 -10.4732 -1.9821 26 6 -2.0105 -10.4737 -3.2394 27 9 -2.8185 -10.6541 -4.3672 28 6 1.4365 -4.7329 0.2278 29 1 -0.4850 0.8400 -0.0004 30 1 3.9515 -2.4831 -0.0067 31 1 5.2859 -4.5391 0.1963 32 1 4.1685 -6.7204 0.4097 33 1 1.9516 -7.8263 1.0075 34 1 -1.8119 -8.2326 -1.2929 35 1 -3.2370 -11.4168 0.5954 36 1 -2.2419 -10.1727 1.3892 37 1 -4.5291 -9.5055 1.2140 38 1 -3.4081 -11.4249 -1.9043 39 1 -3.6072 -9.6615 -2.0431 40 1 -1.4847 -9.5221 -3.3173 41 1 -1.2855 -11.2855 -3.1785 42 1 0.3580 -4.7869 0.2370 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327325605.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:35 Heat of formation + Delta-G solvation = -166.168560 kcal Electronic energy + Delta-G solvation = -28716.385258 eV Core-core repulsion = 24191.090896 eV Total energy + Delta-G solvation = -4525.294362 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -47.90217 -41.03001 -39.58109 -38.54094 -37.65156 -36.64796 -35.58931 -34.20492 -32.30220 -32.24529 -29.70364 -28.90877 -28.56940 -25.56843 -25.03048 -23.78202 -22.34523 -21.53473 -21.09758 -20.37869 -18.83687 -18.15101 -17.96660 -17.13277 -16.96998 -16.49224 -16.32371 -15.99131 -15.83155 -15.47138 -15.11829 -14.99784 -14.83433 -14.45011 -14.27210 -13.99152 -13.92529 -13.61748 -13.49295 -13.04491 -12.90576 -12.59972 -12.56950 -11.90946 -11.83444 -11.68794 -11.59074 -11.35723 -11.18577 -11.09886 -11.04013 -10.79943 -10.47813 -10.45131 -9.90712 -9.70512 -9.59553 -9.22619 -8.84602 -7.81636 -7.24576 -6.44691 -4.03929 1.18805 2.02207 2.26056 2.31398 3.11600 3.13648 3.17302 3.18973 3.47875 3.80664 3.90753 3.96737 4.28993 4.33658 4.38561 4.54452 4.71751 4.79905 4.87839 5.00591 5.09094 5.12602 5.24284 5.27591 5.39103 5.57647 5.69747 5.77519 5.90894 6.01583 6.11580 6.29356 6.52996 6.64385 6.90263 6.96758 7.02593 7.20673 7.30133 7.38292 7.43209 7.61602 7.70656 7.99347 8.03447 9.00058 9.70161 10.73014 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013872 B = 0.002344 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.910235 B =11942.614610 C =12695.062145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.039 3.961 3 Si 0.942 3.058 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.393 4.393 8 H 0.093 0.907 9 O -0.172 6.172 10 C 0.166 3.834 11 C -0.241 4.241 12 C -0.058 4.058 13 C -0.229 4.229 14 C 0.167 3.833 15 N -0.636 5.636 16 C 0.498 3.502 17 O -0.487 6.487 18 C 0.516 3.484 19 O -0.524 6.524 20 N -0.692 5.692 21 C 0.149 3.851 22 H 0.109 0.891 23 C 0.063 3.937 24 O -0.567 6.567 25 C -0.156 4.156 26 C 0.058 3.942 27 F -0.217 7.217 28 C -0.185 4.185 29 H 0.270 0.730 30 H 0.129 0.871 31 H 0.114 0.886 32 H 0.111 0.889 33 H 0.417 0.583 34 H 0.419 0.581 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.382 0.618 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.803 -21.952 0.352 22.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.469 4.469 8 H 0.111 0.889 9 O -0.075 6.075 10 C 0.111 3.889 11 C -0.260 4.260 12 C -0.077 4.077 13 C -0.250 4.250 14 C 0.074 3.926 15 N -0.283 5.283 16 C 0.278 3.722 17 O -0.360 6.360 18 C 0.297 3.703 19 O -0.400 6.400 20 N -0.347 5.347 21 C 0.045 3.955 22 H 0.127 0.873 23 C -0.016 4.016 24 O -0.373 6.373 25 C -0.195 4.195 26 C 0.003 3.997 27 F -0.198 7.198 28 C -0.206 4.206 29 H 0.080 0.920 30 H 0.147 0.853 31 H 0.132 0.868 32 H 0.129 0.871 33 H 0.254 0.746 34 H 0.256 0.744 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.230 0.770 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.027 -21.626 -0.296 21.839 hybrid contribution 0.249 0.598 0.605 0.887 sum -2.778 -21.028 0.309 21.213 Atomic orbital electron populations 1.70049 1.05980 1.27730 1.45616 1.25313 0.95848 0.98866 0.96498 0.85700 0.78898 0.80016 0.78732 1.19851 1.20253 1.19164 1.21352 0.91844 0.80736 1.52939 0.88931 1.83989 1.34253 1.11357 1.77863 1.19105 0.90017 0.87806 0.91972 1.21225 0.93736 0.99202 1.11887 1.20520 0.98526 0.91599 0.97037 1.20296 0.91654 0.97943 1.15147 1.17172 0.91041 0.82911 1.01485 1.42984 1.22678 1.15217 1.47380 1.20063 0.82477 0.88608 0.81031 1.90875 1.60522 1.44412 1.40153 1.20158 0.81631 0.88728 0.79803 1.90751 1.62690 1.45335 1.41199 1.45812 1.22814 1.13987 1.52047 1.21125 0.94813 0.85278 0.94288 0.87310 1.22581 0.88586 0.92821 0.97590 1.86475 1.40897 1.62590 1.47314 1.22377 0.99080 1.05496 0.92503 1.22046 0.92231 1.03607 0.81834 1.92780 1.75920 1.97073 1.54000 1.20158 1.00547 0.88806 1.11080 0.91963 0.85304 0.86814 0.87086 0.74569 0.74394 0.92270 0.92536 0.77009 0.88893 0.88701 0.90423 0.90627 0.84794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.41 13.67 55.48 0.76 -24.65 16 2 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 3 Si 0.94 20.50 29.55 -169.99 -5.02 15.47 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.39 -11.00 9.49 30.89 0.29 -10.71 16 8 H 0.09 2.37 5.20 -52.49 -0.27 2.10 16 9 O -0.17 -4.99 9.75 0.07 0.00 -4.99 16 10 C 0.17 4.09 6.64 -39.14 -0.26 3.83 16 11 C -0.24 -5.18 9.17 -39.35 -0.36 -5.54 16 12 C -0.06 -1.03 10.03 -39.64 -0.40 -1.43 16 13 C -0.23 -3.87 9.97 -39.33 -0.39 -4.26 16 14 C 0.17 3.07 6.29 -83.77 -0.53 2.55 16 15 N -0.64 -9.56 5.32 -10.31 -0.05 -9.62 16 16 C 0.50 7.61 7.73 -11.63 -0.09 7.52 16 17 O -0.49 -9.05 13.91 5.48 0.08 -8.98 16 18 C 0.52 6.35 7.85 -11.63 -0.09 6.26 16 19 O -0.52 -6.80 16.14 5.48 0.09 -6.72 16 20 N -0.69 -6.86 4.47 -54.26 -0.24 -7.11 16 21 C 0.15 1.11 2.37 -67.92 -0.16 0.95 16 22 H 0.11 0.75 7.58 -51.93 -0.39 0.35 16 23 C 0.06 0.43 6.85 37.16 0.25 0.69 16 24 O -0.57 -4.32 12.83 -35.23 -0.45 -4.77 16 25 C -0.16 -1.03 4.93 -26.73 -0.13 -1.16 16 26 C 0.06 0.42 7.44 37.16 0.28 0.70 16 27 F -0.22 -2.20 17.36 2.25 0.04 -2.16 16 28 C -0.18 -4.14 8.63 -39.19 -0.34 -4.48 16 29 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 30 H 0.13 2.74 5.63 -52.49 -0.30 2.45 16 31 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 32 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 33 H 0.42 5.09 8.30 -40.82 -0.34 4.75 16 34 H 0.42 4.28 8.07 -40.82 -0.33 3.95 16 35 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.38 1.47 9.12 45.56 0.42 1.89 16 38 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.09 0.74 7.73 -51.93 -0.40 0.34 16 40 H 0.08 0.59 7.75 -51.93 -0.40 0.19 16 41 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.13 3.18 6.23 -52.49 -0.33 2.85 16 LS Contribution 369.80 15.07 5.57 5.57 Total: -1.00 -34.68 369.80 -5.28 -39.96 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -4.02 Total: 12.06 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -2.02 Total: -4.09 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: 0.46 Total: -41.37 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -0.29 Total: -25.45 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.04 Total: -2.16 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.68 -5.28 -39.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327325605.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.210 kcal (2) G-P(sol) polarization free energy of solvation -34.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds