Wall clock time and date at job start Sat Apr 11 2020 05:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86793 * 120.00022 * 2 1 4 4 H 1.48501 * 109.47156 * 270.00068 * 3 2 1 5 5 H 1.48506 * 109.47033 * 29.99812 * 3 2 1 6 6 H 1.48494 * 109.47164 * 149.99884 * 3 2 1 7 7 C 1.38657 * 119.99528 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.98965 * 180.02562 * 7 2 1 9 9 O 1.34822 * 120.00561 * 359.97438 * 7 2 1 10 10 C 1.35749 * 117.00341 * 185.02306 * 9 7 2 11 11 C 1.38961 * 120.02758 * 354.35472 * 10 9 7 12 12 C 1.38144 * 120.07914 * 179.71440 * 11 10 9 13 13 C 1.38184 * 120.14436 * 0.55913 * 12 11 10 14 14 C 1.38972 * 120.06171 * 359.71520 * 13 12 11 15 15 N 1.39726 * 120.04581 * 179.97438 * 14 13 12 16 16 C 1.34775 * 120.00179 * 215.16336 * 15 14 13 17 17 O 1.21372 * 119.99934 * 355.49130 * 16 15 14 18 18 C 1.49354 * 119.99657 * 175.49651 * 16 15 14 19 19 O 1.21364 * 120.00159 * 0.02562 * 18 16 15 20 20 N 1.34775 * 119.99650 * 179.97438 * 18 16 15 21 21 C 1.46507 * 119.99630 * 180.02562 * 20 18 16 22 22 H 1.08992 * 109.47213 * 324.99766 * 21 20 18 23 23 C 1.53001 * 109.47197 * 85.00530 * 21 20 18 24 24 O 1.42893 * 109.47676 * 64.99493 * 23 21 20 25 25 C 1.53004 * 109.46615 * 204.99828 * 21 20 18 26 26 C 1.53000 * 109.47105 * 65.00141 * 25 21 20 27 27 F 1.39901 * 109.47102 * 179.97438 * 26 25 21 28 28 C 1.38720 * 120.03124 * 174.62275 * 10 9 7 29 29 H 0.96994 * 120.00416 * 0.02562 * 1 2 3 30 30 H 1.07999 * 119.96243 * 359.97438 * 11 10 9 31 31 H 1.08001 * 119.92232 * 180.25457 * 12 11 10 32 32 H 1.07994 * 119.96635 * 179.74416 * 13 12 11 33 33 H 0.96999 * 119.99463 * 35.15358 * 15 14 13 34 34 H 0.97002 * 120.00640 * 0.02562 * 20 18 16 35 35 H 1.08997 * 109.46742 * 185.00046 * 23 21 20 36 36 H 1.09004 * 109.46354 * 304.99370 * 23 21 20 37 37 H 0.96696 * 114.00433 * 179.97438 * 24 23 21 38 38 H 1.09003 * 109.46795 * 184.99443 * 25 21 20 39 39 H 1.08993 * 109.47774 * 304.99905 * 25 21 20 40 40 H 1.08995 * 109.47257 * 299.99668 * 26 25 21 41 41 H 1.09005 * 109.47156 * 59.99653 * 26 25 21 42 42 H 1.07994 * 120.07181 * 359.97438 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4469 2.6526 0.7000 6 1 3.5471 1.4401 0.7000 7 6 2.0088 -1.2009 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3347 -2.3685 0.0016 10 6 2.0700 -3.5046 0.1080 11 6 3.4579 -3.4387 0.0913 12 6 4.2073 -4.5936 0.2054 13 6 3.5799 -5.8190 0.3248 14 6 2.1921 -5.8923 0.3364 15 7 1.5580 -7.1316 0.4567 16 6 0.3997 -7.3618 -0.1928 17 8 -0.1348 -6.4676 -0.8156 18 6 -0.2260 -8.7171 -0.1460 19 8 0.3083 -9.6110 0.4772 20 7 -1.3845 -8.9471 -0.7951 21 6 -1.9986 -10.2765 -0.7487 22 1 -1.2181 -11.0371 -0.7360 23 6 -2.8521 -10.4002 0.5151 24 8 -3.9443 -9.4815 0.4442 25 6 -2.8824 -10.4732 -1.9821 26 6 -2.0105 -10.4737 -3.2394 27 9 -2.8185 -10.6541 -4.3672 28 6 1.4365 -4.7329 0.2278 29 1 -0.4850 0.8400 -0.0004 30 1 3.9515 -2.4831 -0.0067 31 1 5.2859 -4.5391 0.1963 32 1 4.1685 -6.7204 0.4097 33 1 1.9516 -7.8263 1.0075 34 1 -1.8119 -8.2326 -1.2929 35 1 -3.2370 -11.4168 0.5954 36 1 -2.2419 -10.1727 1.3892 37 1 -4.5291 -9.5055 1.2140 38 1 -3.4081 -11.4249 -1.9043 39 1 -3.6072 -9.6615 -2.0431 40 1 -1.4847 -9.5221 -3.3173 41 1 -1.2855 -11.2855 -3.1785 42 1 0.3580 -4.7869 0.2370 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327325605.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:35 Heat of formation + Delta-G solvation = -194.903334 kcal Electronic energy + Delta-G solvation = -28717.631291 eV Core-core repulsion = 24191.090896 eV Total energy + Delta-G solvation = -4526.540396 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.61103 -42.21091 -40.91122 -40.02317 -38.41780 -38.28079 -36.36118 -35.57953 -34.26352 -33.04263 -31.31924 -30.29842 -29.40544 -27.40244 -26.33757 -24.46162 -23.72811 -23.04284 -21.97793 -21.52363 -20.19859 -19.73043 -18.86244 -18.62696 -17.89595 -17.38203 -17.23428 -16.96992 -16.79019 -16.75839 -16.69308 -16.14495 -15.98551 -15.74659 -15.57840 -15.47368 -15.06902 -14.87418 -14.48071 -14.34695 -14.30358 -13.66274 -13.59925 -13.25372 -13.23240 -13.12804 -12.72110 -12.68332 -12.44230 -12.35909 -12.12096 -11.99176 -11.71263 -11.48018 -11.27924 -10.99764 -10.77788 -10.69643 -10.40298 -9.42922 -8.94199 -8.46407 -6.15806 -0.04322 0.59000 0.69068 1.14200 1.35897 1.45833 1.54218 1.98773 2.17324 2.43772 2.81232 3.11341 3.21362 3.31457 3.35213 3.55291 3.73465 3.84719 4.11453 4.15435 4.23240 4.34261 4.37348 4.38643 4.47336 4.56424 4.59538 4.66014 4.69603 4.78904 4.95345 5.10678 5.10912 5.16305 5.27811 5.35807 5.60655 5.71075 5.81740 6.02546 6.12281 6.20911 6.59645 6.80422 6.84787 6.97412 7.78659 8.77159 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013872 B = 0.002344 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.910235 B =11942.614610 C =12695.062145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.026 4.026 3 Si 1.022 2.978 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.248 1.248 7 C -0.414 4.414 8 H 0.108 0.892 9 O -0.232 6.232 10 C 0.127 3.873 11 C -0.249 4.249 12 C -0.047 4.047 13 C -0.198 4.198 14 C 0.174 3.826 15 N -0.626 5.626 16 C 0.494 3.506 17 O -0.525 6.525 18 C 0.527 3.473 19 O -0.527 6.527 20 N -0.683 5.683 21 C 0.146 3.854 22 H 0.122 0.878 23 C 0.064 3.936 24 O -0.587 6.587 25 C -0.145 4.145 26 C 0.052 3.948 27 F -0.233 7.233 28 C -0.208 4.208 29 H 0.272 0.728 30 H 0.126 0.874 31 H 0.162 0.838 32 H 0.163 0.837 33 H 0.435 0.565 34 H 0.416 0.584 35 H 0.089 0.911 36 H 0.043 0.957 37 H 0.397 0.603 38 H 0.113 0.887 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.097 0.903 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.117 -24.764 0.819 24.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.223 4.223 3 Si 0.841 3.159 4 H -0.188 1.188 5 H -0.198 1.198 6 H -0.172 1.172 7 C -0.490 4.490 8 H 0.125 0.875 9 O -0.139 6.139 10 C 0.076 3.924 11 C -0.269 4.269 12 C -0.066 4.066 13 C -0.219 4.219 14 C 0.080 3.920 15 N -0.274 5.274 16 C 0.277 3.723 17 O -0.400 6.400 18 C 0.307 3.693 19 O -0.404 6.404 20 N -0.335 5.335 21 C 0.043 3.957 22 H 0.140 0.860 23 C -0.015 4.015 24 O -0.395 6.395 25 C -0.183 4.183 26 C -0.002 4.002 27 F -0.215 7.215 28 C -0.230 4.230 29 H 0.081 0.919 30 H 0.144 0.856 31 H 0.180 0.820 32 H 0.181 0.819 33 H 0.275 0.725 34 H 0.253 0.747 35 H 0.107 0.893 36 H 0.062 0.938 37 H 0.247 0.753 38 H 0.132 0.868 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.115 0.885 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.323 -24.544 0.195 24.547 hybrid contribution -0.528 1.079 0.476 1.292 sum -0.850 -23.465 0.671 23.490 Atomic orbital electron populations 1.70214 1.08234 1.28816 1.48827 1.26684 0.96849 1.02957 0.95805 0.84541 0.77876 0.74228 0.79252 1.18842 1.19762 1.17183 1.21910 0.92728 0.81189 1.53136 0.87510 1.83957 1.36147 1.12668 1.81114 1.19631 0.91694 0.87364 0.93696 1.21391 0.92505 1.00893 1.12062 1.21049 1.00710 0.90231 0.94571 1.20914 0.90838 0.99630 1.10481 1.17297 0.91926 0.82908 0.99872 1.42920 1.22649 1.14330 1.47493 1.20736 0.82050 0.89599 0.79956 1.90878 1.61440 1.46040 1.41687 1.19490 0.82271 0.87056 0.80495 1.90755 1.63064 1.44759 1.41774 1.45914 1.21800 1.15113 1.50720 1.21420 0.95326 0.83826 0.95169 0.85998 1.22612 0.88280 0.94214 0.96386 1.86441 1.41395 1.63144 1.48549 1.22286 0.98463 1.05997 0.91602 1.22213 0.92492 1.04104 0.81424 1.92746 1.76497 1.97145 1.55069 1.20173 0.99758 0.90001 1.13025 0.91877 0.85616 0.82009 0.81915 0.72473 0.74682 0.89275 0.93827 0.75267 0.86844 0.90120 0.91217 0.88482 0.87563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.18 13.67 21.61 0.30 -57.88 16 2 C -0.03 -1.49 5.49 84.83 0.47 -1.02 16 3 Si 1.02 43.22 29.55 68.60 2.03 45.25 16 4 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 5 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 6 H -0.25 -9.58 7.11 99.48 0.71 -8.88 16 7 C -0.41 -24.45 9.49 67.92 0.64 -23.81 16 8 H 0.11 5.67 5.20 -2.91 -0.02 5.66 16 9 O -0.23 -14.54 9.75 -22.65 -0.22 -14.77 16 10 C 0.13 6.59 6.64 22.56 0.15 6.74 16 11 C -0.25 -10.63 9.17 22.42 0.21 -10.42 16 12 C -0.05 -1.50 10.03 22.23 0.22 -1.27 16 13 C -0.20 -5.80 9.97 22.43 0.22 -5.58 16 14 C 0.17 6.16 6.29 38.20 0.24 6.40 16 15 N -0.63 -17.73 5.32 -304.89 -1.62 -19.35 16 16 C 0.49 15.00 7.73 87.24 0.67 15.67 16 17 O -0.53 -20.39 13.91 -3.32 -0.05 -20.43 16 18 C 0.53 12.34 7.85 87.24 0.68 13.03 16 19 O -0.53 -12.45 16.14 -3.29 -0.05 -12.50 16 20 N -0.68 -12.95 4.47 -443.95 -1.98 -14.94 16 21 C 0.15 1.87 2.37 44.99 0.11 1.97 16 22 H 0.12 1.30 7.58 -2.39 -0.02 1.29 16 23 C 0.06 0.74 6.85 71.98 0.49 1.23 16 24 O -0.59 -8.24 12.83 -148.98 -1.91 -10.15 16 25 C -0.15 -1.65 4.93 30.60 0.15 -1.50 16 26 C 0.05 0.70 7.44 71.98 0.54 1.23 16 27 F -0.23 -4.55 17.36 44.97 0.78 -3.77 16 28 C -0.21 -9.74 8.63 22.52 0.19 -9.54 16 29 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 30 H 0.13 5.36 5.63 -2.91 -0.02 5.34 16 31 H 0.16 3.67 8.06 -2.91 -0.02 3.64 16 32 H 0.16 3.24 8.06 -2.91 -0.02 3.21 16 33 H 0.43 9.22 8.30 -92.71 -0.77 8.45 16 34 H 0.42 8.59 8.07 -92.71 -0.75 7.84 16 35 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.04 0.63 8.14 -2.38 -0.02 0.61 16 37 H 0.40 2.61 9.12 -74.06 -0.68 1.94 16 38 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.08 1.19 7.73 -2.39 -0.02 1.17 16 40 H 0.07 1.03 7.75 -2.39 -0.02 1.01 16 41 H 0.10 0.88 8.14 -2.38 -0.02 0.86 16 42 H 0.11 5.49 6.23 -2.91 -0.02 5.47 16 Total: -1.00 -83.02 369.80 1.19 -81.84 By element: Atomic # 1 Polarization: 34.65 SS G_CDS: -1.07 Total: 33.58 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: 4.99 Total: -6.87 kcal Atomic # 7 Polarization: -88.86 SS G_CDS: -3.31 Total: -92.17 kcal Atomic # 8 Polarization: -55.62 SS G_CDS: -2.23 Total: -57.85 kcal Atomic # 9 Polarization: -4.55 SS G_CDS: 0.78 Total: -3.77 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -83.02 1.19 -81.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327325605.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.067 kcal (2) G-P(sol) polarization free energy of solvation -83.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds