Wall clock time and date at job start Sat Apr 11 2020 05:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86795 * 119.99956 * 2 1 4 4 H 1.48504 * 109.47074 * 269.99282 * 3 2 1 5 5 H 1.48496 * 109.47375 * 29.99558 * 3 2 1 6 6 H 1.48500 * 109.47597 * 149.99746 * 3 2 1 7 7 C 1.38654 * 120.00291 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99248 * 0.02562 * 7 2 1 9 9 O 1.34795 * 120.00125 * 180.02562 * 7 2 1 10 10 C 1.35762 * 116.99738 * 174.96355 * 9 7 2 11 11 C 1.38934 * 119.99681 * 5.34648 * 10 9 7 12 12 C 1.37964 * 120.01268 * 180.02562 * 11 10 9 13 13 C 1.39001 * 119.98965 * 359.97438 * 12 11 10 14 14 N 1.39736 * 120.00807 * 179.97438 * 13 12 11 15 15 C 1.34780 * 119.99769 * 35.14958 * 14 13 12 16 16 O 1.21395 * 119.99886 * 355.49717 * 15 14 13 17 17 C 1.49317 * 120.00074 * 175.49134 * 15 14 13 18 18 O 1.21365 * 120.00058 * 0.02562 * 17 15 14 19 19 N 1.34780 * 120.00074 * 179.97438 * 17 15 14 20 20 C 1.46491 * 120.00118 * 180.28071 * 19 17 15 21 21 H 1.08997 * 109.47316 * 34.72046 * 20 19 17 22 22 C 1.53006 * 109.47082 * 274.72136 * 20 19 17 23 23 O 1.42896 * 109.47151 * 295.00492 * 22 20 19 24 24 C 1.53002 * 109.47611 * 154.72346 * 20 19 17 25 25 C 1.53001 * 109.46967 * 295.00129 * 24 20 19 26 26 F 1.39902 * 109.47157 * 179.97438 * 25 24 20 27 27 C 1.38999 * 119.98584 * 0.26200 * 13 12 11 28 28 C 1.37971 * 119.98880 * 359.48102 * 27 13 12 29 29 H 0.97002 * 120.00032 * 0.02562 * 1 2 3 30 30 H 1.08008 * 119.99424 * 359.97438 * 11 10 9 31 31 H 1.07991 * 120.00808 * 179.97438 * 12 11 10 32 32 H 0.96998 * 120.00736 * 215.14648 * 14 13 12 33 33 H 0.97002 * 119.99795 * 359.97438 * 19 17 15 34 34 H 1.09007 * 109.46336 * 55.00159 * 22 20 19 35 35 H 1.08995 * 109.47323 * 174.99628 * 22 20 19 36 36 H 0.96698 * 113.99727 * 179.97438 * 23 22 20 37 37 H 1.09008 * 109.46656 * 54.99553 * 24 20 19 38 38 H 1.08999 * 109.47601 * 174.99859 * 24 20 19 39 39 H 1.08995 * 109.46886 * 299.99846 * 25 24 20 40 40 H 1.08999 * 109.47181 * 59.99472 * 25 24 20 41 41 H 1.07993 * 120.00630 * 179.74496 * 27 13 12 42 42 H 1.08004 * 119.99120 * 180.23650 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4470 2.6527 0.6999 6 1 3.5471 1.4403 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 1.4688 -2.1360 0.0005 9 8 3.3569 -1.2007 0.0011 10 6 3.9732 -2.4057 0.1078 11 6 3.2211 -3.5738 0.0981 12 6 3.8470 -4.7985 0.2071 13 6 5.2304 -4.8636 0.3260 14 7 5.8646 -6.1037 0.4369 15 6 5.3799 -7.1705 -0.2291 16 8 4.3468 -7.0744 -0.8594 17 6 6.1135 -8.4705 -0.1918 18 8 7.1461 -8.5667 0.4386 19 7 5.6284 -9.5374 -0.8573 20 6 6.3450 -10.8145 -0.8157 21 1 6.8061 -10.9406 0.1638 22 6 7.4293 -10.8263 -1.8951 23 8 6.8173 -10.7780 -3.1855 24 6 5.3619 -11.9594 -1.0679 25 6 4.3507 -12.0251 0.0785 26 9 3.4514 -13.0717 -0.1524 27 6 5.9822 -3.6945 0.3405 28 6 5.3560 -2.4704 0.2262 29 1 -0.4850 0.8401 -0.0004 30 1 2.1461 -3.5231 0.0062 31 1 3.2623 -5.7064 0.2000 32 1 6.6538 -6.1969 0.9931 33 1 4.8025 -9.4608 -1.3603 34 1 8.0779 -9.9595 -1.7679 35 1 8.0198 -11.7381 -1.8069 36 1 7.4467 -10.7821 -3.9196 37 1 4.8359 -11.7865 -2.0069 38 1 5.9078 -12.9011 -1.1252 39 1 4.8766 -12.1979 1.0174 40 1 3.8048 -11.0834 0.1358 41 1 7.0566 -3.7446 0.4370 42 1 5.9404 -1.5622 0.2337 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349573206.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:45 Heat of formation + Delta-G solvation = -191.635421 kcal Electronic energy + Delta-G solvation = -28453.915711 eV Core-core repulsion = 23927.517023 eV Total energy + Delta-G solvation = -4526.398688 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.60409 -42.14974 -40.97581 -40.08854 -38.41343 -38.29024 -36.32292 -35.46607 -34.38124 -33.01941 -31.94502 -30.17708 -29.36815 -27.39283 -25.99367 -24.42510 -24.03127 -22.92018 -21.87727 -21.43421 -20.30286 -19.54244 -19.10137 -18.64023 -18.25239 -17.53444 -17.30581 -17.14052 -16.79149 -16.72436 -16.40801 -15.90005 -15.87307 -15.68613 -15.50439 -15.42951 -15.14531 -14.76338 -14.49020 -14.40473 -14.23074 -14.08719 -13.65269 -13.47492 -13.35720 -13.19320 -12.79736 -12.73442 -12.48233 -12.42147 -12.00547 -11.97826 -11.70174 -11.53286 -11.18954 -10.99215 -10.77665 -10.65558 -10.37167 -9.90607 -8.77303 -8.49813 -6.22314 0.02249 0.47659 0.64797 1.19632 1.33764 1.38339 1.53947 2.03604 2.28988 2.50632 2.73836 3.00057 3.14481 3.25888 3.33755 3.37988 3.74881 3.85608 4.03717 4.05497 4.16537 4.24627 4.40264 4.41818 4.49094 4.55057 4.58040 4.59967 4.68088 4.80201 4.96938 5.13013 5.14705 5.18750 5.29320 5.37314 5.53572 5.72163 5.82536 5.89783 6.13722 6.26808 6.64704 6.83634 6.84992 6.87274 7.55376 8.61692 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019775 B = 0.002050 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.614410 B =13657.384148 C =14411.181015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.009 3.991 3 Si 0.974 3.026 4 H -0.266 1.266 5 H -0.269 1.269 6 H -0.257 1.257 7 C -0.401 4.401 8 H 0.079 0.921 9 O -0.237 6.237 10 C 0.118 3.882 11 C -0.222 4.222 12 C -0.074 4.074 13 C 0.058 3.942 14 N -0.619 5.619 15 C 0.496 3.504 16 O -0.531 6.531 17 C 0.524 3.476 18 O -0.530 6.530 19 N -0.682 5.682 20 C 0.146 3.854 21 H 0.119 0.881 22 C 0.065 3.935 23 O -0.586 6.586 24 C -0.145 4.145 25 C 0.052 3.948 26 F -0.234 7.234 27 C -0.072 4.072 28 C -0.167 4.167 29 H 0.285 0.715 30 H 0.110 0.890 31 H 0.128 0.872 32 H 0.431 0.569 33 H 0.417 0.583 34 H 0.044 0.956 35 H 0.086 0.914 36 H 0.397 0.603 37 H 0.082 0.918 38 H 0.111 0.889 39 H 0.094 0.906 40 H 0.072 0.928 41 H 0.172 0.828 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.637 -24.107 -0.974 31.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.190 4.190 3 Si 0.796 3.204 4 H -0.191 1.191 5 H -0.194 1.194 6 H -0.181 1.181 7 C -0.477 4.477 8 H 0.096 0.904 9 O -0.144 6.144 10 C 0.069 3.931 11 C -0.242 4.242 12 C -0.094 4.094 13 C -0.036 4.036 14 N -0.266 5.266 15 C 0.278 3.722 16 O -0.408 6.408 17 C 0.304 3.696 18 O -0.407 6.407 19 N -0.335 5.335 20 C 0.042 3.958 21 H 0.137 0.863 22 C -0.014 4.014 23 O -0.394 6.394 24 C -0.183 4.183 25 C -0.003 4.003 26 F -0.215 7.215 27 C -0.091 4.091 28 C -0.187 4.187 29 H 0.095 0.905 30 H 0.128 0.872 31 H 0.146 0.854 32 H 0.271 0.729 33 H 0.254 0.746 34 H 0.063 0.937 35 H 0.104 0.896 36 H 0.247 0.753 37 H 0.101 0.899 38 H 0.129 0.871 39 H 0.112 0.888 40 H 0.090 0.910 41 H 0.189 0.811 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 19.011 -23.857 -0.648 30.512 hybrid contribution -0.343 0.625 -0.454 0.845 sum 18.668 -23.232 -1.102 29.823 Atomic orbital electron populations 1.69741 1.07071 1.29699 1.49882 1.25338 0.95899 1.02362 0.95371 0.85168 0.78926 0.77030 0.79312 1.19099 1.19397 1.18104 1.20697 0.78149 0.96106 1.52739 0.90358 1.83502 1.21132 1.27123 1.82678 1.19721 0.93386 0.84861 0.95168 1.21125 1.00355 0.92519 1.10212 1.20918 0.93721 0.96814 0.97927 1.17425 0.90976 0.84939 1.10221 1.42779 1.31382 1.06155 1.46302 1.20547 0.85614 0.86045 0.79963 1.90811 1.23704 1.84166 1.42083 1.19600 0.84977 0.84698 0.80296 1.90766 1.23376 1.84139 1.42455 1.45876 1.28239 1.09665 1.49748 1.21377 0.92829 0.81037 1.00511 0.86333 1.22590 0.93978 1.01700 0.83121 1.86433 1.39187 1.97700 1.16091 1.22281 0.97349 0.99298 0.99371 1.22219 0.89900 0.87836 1.00332 1.92748 1.70916 1.61534 1.96305 1.20858 1.00694 0.88793 0.98787 1.20391 0.90219 0.99528 1.08520 0.90529 0.87222 0.85430 0.72906 0.74570 0.93743 0.89568 0.75265 0.89896 0.87088 0.88758 0.91001 0.81102 0.83595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.41 13.96 21.61 0.30 -55.11 16 2 C 0.01 0.51 5.49 84.83 0.47 0.97 16 3 Si 0.97 44.86 28.62 68.60 1.96 46.83 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 5 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 6 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.40 -23.60 9.94 67.92 0.68 -22.93 16 8 H 0.08 4.89 5.43 -2.91 -0.02 4.88 16 9 O -0.24 -12.64 8.58 -22.52 -0.19 -12.84 16 10 C 0.12 5.42 6.65 22.60 0.15 5.57 16 11 C -0.22 -10.08 9.16 22.37 0.20 -9.87 16 12 C -0.07 -2.82 8.69 22.39 0.19 -2.62 16 13 C 0.06 1.78 6.30 38.25 0.24 2.02 16 14 N -0.62 -14.86 5.32 -304.73 -1.62 -16.48 16 15 C 0.50 12.53 7.73 87.23 0.67 13.20 16 16 O -0.53 -16.80 13.91 -3.39 -0.05 -16.84 16 17 C 0.52 10.39 7.85 87.23 0.68 11.08 16 18 O -0.53 -11.18 16.14 -3.29 -0.05 -11.24 16 19 N -0.68 -10.49 4.47 -444.00 -1.98 -12.47 16 20 C 0.15 1.50 2.37 45.00 0.11 1.60 16 21 H 0.12 1.05 7.57 -2.39 -0.02 1.03 16 22 C 0.06 0.58 6.85 71.98 0.49 1.07 16 23 O -0.59 -6.29 12.83 -148.98 -1.91 -8.20 16 24 C -0.14 -1.31 4.93 30.60 0.15 -1.16 16 25 C 0.05 0.59 7.44 71.98 0.54 1.12 16 26 F -0.23 -4.14 17.36 44.97 0.78 -3.36 16 27 C -0.07 -2.02 9.96 22.39 0.22 -1.79 16 28 C -0.17 -5.91 9.98 22.37 0.22 -5.68 16 29 H 0.29 15.65 8.31 -92.71 -0.77 14.88 16 30 H 0.11 5.53 5.63 -2.91 -0.02 5.51 16 31 H 0.13 4.84 6.22 -2.92 -0.02 4.83 16 32 H 0.43 7.77 8.30 -92.71 -0.77 7.00 16 33 H 0.42 6.77 8.07 -92.71 -0.75 6.02 16 34 H 0.04 0.52 8.14 -2.38 -0.02 0.50 16 35 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 36 H 0.40 1.32 9.12 -74.06 -0.68 0.64 16 37 H 0.08 0.98 7.73 -2.38 -0.02 0.96 16 38 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.07 0.87 7.75 -2.39 -0.02 0.86 16 41 H 0.17 3.16 8.06 -2.91 -0.02 3.14 16 42 H 0.15 4.51 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -74.83 368.65 1.19 -73.64 By element: Atomic # 1 Polarization: 24.55 SS G_CDS: -1.07 Total: 23.48 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: 5.02 Total: -7.41 kcal Atomic # 7 Polarization: -80.76 SS G_CDS: -3.30 Total: -84.06 kcal Atomic # 8 Polarization: -46.91 SS G_CDS: -2.20 Total: -49.12 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.78 Total: -3.36 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.96 Total: 46.83 kcal Total: -74.83 1.19 -73.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349573206.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.997 kcal (2) G-P(sol) polarization free energy of solvation -74.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds