Wall clock time and date at job start Sat Apr 11 2020 05:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86803 * 119.99674 * 2 1 4 4 H 1.48496 * 109.47422 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47300 * 300.00482 * 3 2 1 6 6 H 1.48505 * 109.47431 * 60.00130 * 3 2 1 7 7 C 1.38652 * 120.00685 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00180 * 179.97438 * 7 2 1 9 9 O 1.34831 * 119.99526 * 359.97438 * 7 2 1 10 10 C 1.35752 * 116.99717 * 185.10323 * 9 7 2 11 11 C 1.38956 * 120.03118 * 174.19505 * 10 9 7 12 12 C 1.38127 * 120.07424 * 179.75145 * 11 10 9 13 13 C 1.38192 * 120.14132 * 0.55734 * 12 11 10 14 14 C 1.38941 * 120.06453 * 359.69800 * 13 12 11 15 15 N 1.39842 * 120.04094 * 180.02562 * 14 13 12 16 16 C 1.34777 * 119.99911 * 326.63574 * 15 14 13 17 17 O 1.21660 * 120.00029 * 354.84265 * 16 15 14 18 18 C 1.47058 * 120.00299 * 174.83803 * 16 15 14 19 19 C 1.39348 * 120.58756 * 185.84637 * 18 16 15 20 20 C 1.39469 * 118.95665 * 179.97438 * 19 18 16 21 21 C 1.35765 * 120.13275 * 359.97438 * 20 19 18 22 22 N 1.35438 * 121.23268 * 0.02562 * 21 20 19 23 23 C 1.46498 * 119.46934 * 179.97438 * 22 21 20 24 24 C 1.52997 * 117.49874 * 8.62364 * 23 22 21 25 25 C 1.52991 * 117.50044 * 299.99921 * 23 22 21 26 26 C 1.34661 * 121.05644 * 359.71884 * 22 21 20 27 27 O 1.21887 * 120.09877 * 180.26315 * 26 22 21 28 28 C 1.38720 * 120.03473 * 354.47931 * 10 9 7 29 29 H 0.96991 * 120.00312 * 359.97438 * 1 2 3 30 30 H 1.08003 * 119.96144 * 0.02981 * 11 10 9 31 31 H 1.07996 * 119.92710 * 180.25197 * 12 11 10 32 32 H 1.07992 * 119.97365 * 179.72379 * 13 12 11 33 33 H 0.97002 * 120.00549 * 146.63601 * 15 14 13 34 34 H 1.07995 * 120.52054 * 359.97438 * 19 18 16 35 35 H 1.07996 * 119.93186 * 180.02562 * 20 19 18 36 36 H 1.07994 * 119.38201 * 180.02562 * 21 20 19 37 37 H 1.09001 * 115.54660 * 154.32608 * 23 22 21 38 38 H 1.09007 * 117.50247 * 359.97438 * 24 23 22 39 39 H 1.09001 * 117.50214 * 145.02429 * 24 23 22 40 40 H 1.09002 * 117.50424 * 214.97965 * 25 23 22 41 41 H 1.09005 * 117.50203 * 359.97438 * 25 23 22 42 42 H 1.08011 * 120.07024 * 359.97438 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7095 1.3466 -0.0006 5 1 1.8906 2.3966 -1.2124 6 1 1.8907 2.3966 1.2125 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2006 -0.0010 9 8 1.3348 -2.3684 -0.0005 10 6 2.0702 -3.5045 0.1065 11 6 1.4357 -4.7341 0.2345 12 6 2.1830 -5.8911 0.3383 13 6 3.5635 -5.8289 0.3269 14 6 4.2040 -4.6020 0.2045 15 7 5.6010 -4.5397 0.1925 16 6 6.3209 -5.4167 0.9199 17 8 5.7570 -6.2012 1.6593 18 6 7.7880 -5.4254 0.8198 19 6 8.5374 -6.4033 1.4710 20 6 9.9268 -6.3796 1.3526 21 6 10.5314 -5.4157 0.6120 22 7 9.8095 -4.4622 -0.0237 23 6 10.5019 -3.4399 -0.8122 24 6 12.0035 -3.6217 -1.0419 25 6 11.5017 -2.5414 -0.0818 26 6 8.4652 -4.4418 0.0534 27 8 7.8326 -3.5784 -0.5296 28 6 3.4558 -3.4384 0.0942 29 1 -0.4850 0.8399 0.0004 30 1 0.3570 -4.7856 0.2482 31 1 1.6874 -6.8459 0.4336 32 1 4.1451 -6.7348 0.4127 33 1 6.0519 -3.8654 -0.3393 34 1 8.0499 -7.1674 2.0582 35 1 10.5229 -7.1301 1.8503 36 1 11.6081 -5.4091 0.5281 37 1 9.9195 -2.9936 -1.6182 38 1 12.4765 -4.5018 -0.6060 39 1 12.4095 -3.2950 -1.9993 40 1 11.5776 -1.5039 -0.4075 41 1 11.6442 -2.7105 0.9856 42 1 3.9512 -2.4834 -0.0009 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361294914.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:48 Heat of formation + Delta-G solvation = 13.239892 kcal Electronic energy + Delta-G solvation = -28254.299764 eV Core-core repulsion = 24167.554361 eV Total energy + Delta-G solvation = -4086.745403 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.06355 -39.91407 -38.57613 -37.88278 -37.10982 -36.19978 -33.90994 -33.26563 -32.12329 -30.65811 -29.17437 -28.39106 -25.83518 -25.16911 -24.31697 -23.15633 -22.65777 -21.66352 -21.41536 -20.10192 -18.48429 -18.20683 -17.84839 -17.53906 -16.78505 -16.41717 -16.16772 -15.41521 -15.22537 -14.95081 -14.92867 -14.70367 -14.34231 -14.03162 -13.82327 -13.60066 -13.42472 -12.96468 -12.89531 -12.80357 -12.57966 -12.25656 -12.17071 -11.70534 -11.60117 -11.42326 -11.34096 -11.04014 -10.90438 -10.69368 -10.37411 -10.31788 -10.18323 -9.81125 -9.43959 -9.28156 -8.70522 -8.45752 -7.53935 -7.01133 -6.34961 -3.93857 0.02111 1.39460 1.89295 2.12045 2.49855 2.70283 3.08717 3.19165 3.20417 3.26174 3.50268 3.62410 3.77821 3.94885 4.05666 4.10006 4.16394 4.29387 4.53161 4.73790 4.75513 4.83406 4.88774 5.09897 5.19342 5.22393 5.31996 5.41791 5.42847 5.55307 5.71599 5.87537 5.97297 6.14195 6.24666 6.41659 6.44692 6.50903 6.77594 7.14484 7.15847 7.28360 7.43021 7.50652 7.55691 7.91039 8.07463 8.10800 8.57152 9.11230 9.82405 10.83500 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011130 B = 0.003099 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.079105 B = 9031.931809 C =11229.830031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.039 3.961 3 Si 0.939 3.061 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.389 4.389 8 H 0.091 0.909 9 O -0.178 6.178 10 C 0.168 3.832 11 C -0.202 4.202 12 C -0.064 4.064 13 C -0.207 4.207 14 C 0.183 3.817 15 N -0.655 5.655 16 C 0.573 3.427 17 O -0.531 6.531 18 C -0.267 4.267 19 C 0.059 3.941 20 C -0.235 4.235 21 C 0.149 3.851 22 N -0.462 5.462 23 C 0.042 3.958 24 C -0.178 4.178 25 C -0.175 4.175 26 C 0.533 3.467 27 O -0.533 6.533 28 C -0.254 4.254 29 H 0.268 0.732 30 H 0.118 0.882 31 H 0.115 0.885 32 H 0.119 0.881 33 H 0.420 0.580 34 H 0.153 0.847 35 H 0.156 0.844 36 H 0.168 0.832 37 H 0.154 0.846 38 H 0.105 0.895 39 H 0.116 0.884 40 H 0.114 0.886 41 H 0.104 0.896 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.783 -10.629 -0.193 30.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.165 4.165 3 Si 0.764 3.236 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.466 4.466 8 H 0.108 0.892 9 O -0.082 6.082 10 C 0.114 3.886 11 C -0.222 4.222 12 C -0.083 4.083 13 C -0.228 4.228 14 C 0.089 3.911 15 N -0.308 5.308 16 C 0.361 3.639 17 O -0.409 6.409 18 C -0.274 4.274 19 C 0.036 3.964 20 C -0.258 4.258 21 C 0.019 3.981 22 N -0.169 5.169 23 C -0.061 4.061 24 C -0.215 4.215 25 C -0.213 4.213 26 C 0.335 3.665 27 O -0.414 6.414 28 C -0.276 4.276 29 H 0.078 0.922 30 H 0.136 0.864 31 H 0.133 0.867 32 H 0.137 0.863 33 H 0.267 0.733 34 H 0.171 0.829 35 H 0.174 0.826 36 H 0.185 0.815 37 H 0.172 0.828 38 H 0.123 0.877 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.122 0.878 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 27.613 -10.311 -0.157 29.476 hybrid contribution 0.932 1.144 -0.154 1.483 sum 28.545 -9.167 -0.310 29.982 Atomic orbital electron populations 1.70047 1.05880 1.27360 1.46775 1.25249 0.95811 0.98696 0.96739 0.85681 0.79215 0.80590 0.78162 1.19142 1.20191 1.20194 1.21357 0.91787 0.80904 1.52519 0.89160 1.83999 1.33956 1.11315 1.78900 1.19063 0.89356 0.88190 0.91953 1.20228 0.99626 0.90292 1.12022 1.20510 0.93035 0.96837 0.97915 1.20564 0.94334 0.95985 1.11876 1.17482 0.81307 0.93786 0.98490 1.44069 1.05351 1.34679 1.46744 1.17398 0.85307 0.81156 0.80020 1.90800 1.71427 1.40218 1.38491 1.21035 0.94962 1.01855 1.09576 1.22063 0.93026 0.93139 0.88202 1.20697 0.94854 1.02950 1.07320 1.22214 0.98753 0.87154 0.89949 1.44839 1.07801 1.23969 1.40270 1.22304 0.90408 0.94134 0.99234 1.23537 0.93658 1.01520 1.02824 1.23515 1.00985 0.97700 0.99090 1.17023 0.80244 0.86420 0.82803 1.90667 1.63275 1.39049 1.48420 1.20844 0.93914 0.97276 1.15550 0.92206 0.86429 0.86670 0.86335 0.73291 0.82905 0.82595 0.81500 0.82836 0.87659 0.86577 0.86749 0.87811 0.85277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -26.30 13.67 55.48 0.76 -25.54 16 2 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 3 Si 0.94 21.55 29.55 -169.99 -5.02 16.53 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.39 -11.48 9.49 30.89 0.29 -11.18 16 8 H 0.09 2.52 5.20 -52.49 -0.27 2.24 16 9 O -0.18 -5.35 9.76 0.04 0.00 -5.35 16 10 C 0.17 4.41 6.64 -39.14 -0.26 4.15 16 11 C -0.20 -4.66 9.99 -39.36 -0.39 -5.06 16 12 C -0.06 -1.31 10.03 -39.64 -0.40 -1.71 16 13 C -0.21 -4.41 8.65 -39.34 -0.34 -4.75 16 14 C 0.18 4.09 6.27 -83.74 -0.53 3.56 16 15 N -0.66 -12.99 5.25 -10.95 -0.06 -13.04 16 16 C 0.57 10.41 7.48 -12.68 -0.09 10.31 16 17 O -0.53 -10.67 14.08 5.22 0.07 -10.60 16 18 C -0.27 -3.65 5.92 -104.51 -0.62 -4.27 16 19 C 0.06 0.56 9.70 -38.71 -0.38 0.18 16 20 C -0.24 -1.30 9.99 -40.01 -0.40 -1.70 16 21 C 0.15 0.76 9.83 -16.85 -0.17 0.60 16 22 N -0.46 -3.94 2.92 -112.22 -0.33 -4.27 16 23 C 0.04 0.28 6.18 -67.94 -0.42 -0.14 16 24 C -0.18 -0.53 9.79 -26.73 -0.26 -0.79 16 25 C -0.18 -0.79 10.25 -26.74 -0.27 -1.07 16 26 C 0.53 6.99 7.44 -14.91 -0.11 6.88 16 27 O -0.53 -8.63 13.39 5.02 0.07 -8.56 16 28 C -0.25 -6.23 9.08 -39.20 -0.36 -6.59 16 29 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.12 2.57 8.06 -52.48 -0.42 2.14 16 31 H 0.12 1.95 8.06 -52.49 -0.42 1.52 16 32 H 0.12 2.43 6.40 -52.49 -0.34 2.09 16 33 H 0.42 8.09 5.42 -40.82 -0.22 7.87 16 34 H 0.15 1.34 7.71 -52.49 -0.40 0.94 16 35 H 0.16 0.33 8.06 -52.49 -0.42 -0.09 16 36 H 0.17 0.18 5.73 -52.49 -0.30 -0.12 16 37 H 0.15 1.22 7.62 -51.93 -0.40 0.83 16 38 H 0.11 0.12 6.02 -51.93 -0.31 -0.20 16 39 H 0.12 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.13 3.19 5.64 -52.48 -0.30 2.89 16 LS Contribution 358.82 15.07 5.41 5.41 Total: -1.00 -37.85 358.82 -8.11 -45.96 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -4.21 Total: 10.02 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: -4.80 Total: -10.55 kcal Atomic # 7 Polarization: -43.23 SS G_CDS: 0.37 Total: -42.85 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: 0.14 Total: -24.51 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -37.85 -8.11 -45.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361294914.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.203 kcal (2) G-P(sol) polarization free energy of solvation -37.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds