Wall clock time and date at job start Sat Apr 11 2020 05:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34709 * 117.00104 * 2 1 4 4 O 1.21470 * 119.99756 * 0.02562 * 3 2 1 5 5 C 1.47735 * 119.99790 * 179.97438 * 3 2 1 6 6 C 1.39380 * 120.08075 * 4.20789 * 5 3 2 7 7 C 1.39308 * 119.70112 * 180.24572 * 6 5 3 8 8 C 1.47823 * 120.06933 * 179.76938 * 7 6 5 9 9 O 1.21542 * 120.00543 * 359.72462 * 8 7 6 10 10 N 1.34783 * 119.99673 * 179.72127 * 8 7 6 11 11 C 1.39378 * 120.00146 * 185.08920 * 10 8 7 12 12 C 1.38617 * 119.58298 * 185.60099 * 11 10 8 13 13 C 1.40809 * 118.79470 * 179.70254 * 12 11 10 14 14 C 1.41540 * 120.99555 * 180.25172 * 13 12 11 15 15 H 1.07999 * 119.99814 * 149.16690 * 14 13 12 16 16 C 1.40032 * 120.00369 * 329.16466 * 14 13 12 17 17 N 1.30738 * 120.00448 * 166.36996 * 16 14 13 18 18 Si 1.86799 * 119.99772 * 346.37172 * 16 14 13 19 19 H 1.48502 * 109.47261 * 87.25987 * 18 16 14 20 20 H 1.48502 * 109.47431 * 207.26254 * 18 16 14 21 21 H 1.48508 * 109.47373 * 327.26300 * 18 16 14 22 22 C 1.41182 * 118.00864 * 0.27169 * 13 12 11 23 23 C 1.37588 * 119.01425 * 0.02562 * 22 13 12 24 24 N 1.32071 * 121.11718 * 0.02562 * 23 22 13 25 25 C 1.39727 * 119.85346 * 359.49400 * 7 6 5 26 26 C 1.38056 * 120.15283 * 0.23416 * 25 7 6 27 27 C 1.38092 * 120.30566 * 359.97438 * 26 25 7 28 28 C 1.50702 * 119.92755 * 180.02562 * 27 26 25 29 29 H 1.08997 * 109.47280 * 300.00309 * 1 2 3 30 30 H 1.09003 * 109.46459 * 60.00051 * 1 2 3 31 31 H 1.08996 * 109.47213 * 179.97438 * 1 2 3 32 32 H 1.08003 * 120.15207 * 359.97438 * 6 5 3 33 33 H 0.97002 * 119.99842 * 5.08792 * 10 8 7 34 34 H 1.07997 * 120.60426 * 359.97189 * 12 11 10 35 35 H 0.96997 * 120.00544 * 180.02562 * 17 16 14 36 36 H 1.07995 * 120.48896 * 180.02562 * 22 13 12 37 37 H 1.08004 * 119.43683 * 179.97438 * 23 22 13 38 38 H 1.08001 * 119.92009 * 180.25363 * 25 7 6 39 39 H 1.08006 * 119.84554 * 180.02562 * 26 25 7 40 40 H 1.09001 * 109.47204 * 97.07672 * 28 27 26 41 41 H 1.08994 * 109.46775 * 217.07606 * 28 27 26 42 42 H 1.09000 * 109.47313 * 337.07396 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5390 1.2775 0.0006 6 6 4.2995 0.1128 -0.0874 7 6 5.6902 0.1944 -0.0810 8 6 6.5048 -1.0360 -0.1688 9 8 5.9614 -2.1207 -0.2415 10 7 7.8502 -0.9549 -0.1681 11 6 8.6176 -2.1029 -0.3573 12 6 9.9969 -2.0311 -0.2394 13 6 10.7556 -3.2022 -0.4276 14 6 12.1662 -3.1832 -0.3129 15 1 12.6916 -4.0607 0.0341 16 6 12.8806 -2.0268 -0.6493 17 7 14.1346 -1.9080 -0.2993 18 14 12.0417 -0.6537 -1.5982 19 1 11.3704 0.2674 -0.6464 20 1 13.0551 0.0970 -2.3823 21 1 11.0327 -1.2340 -2.5205 22 6 10.0671 -4.3960 -0.7347 23 6 8.6954 -4.3677 -0.8374 24 7 8.0202 -3.2475 -0.6544 25 6 6.3133 1.4423 0.0027 26 6 5.5541 2.5925 0.0839 27 6 4.1751 2.5187 0.0824 28 6 3.3547 3.7797 0.1708 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.8130 -0.8490 -0.1558 33 1 8.2843 -0.0976 -0.0360 34 1 10.4805 -1.0948 -0.0030 35 1 14.6294 -1.1068 -0.5320 36 1 10.6093 -5.3175 -0.8868 37 1 8.1619 -5.2769 -1.0725 38 1 7.3914 1.5071 0.0036 39 1 6.0409 3.5545 0.1480 40 1 3.0480 4.0846 -0.8298 41 1 2.4708 3.5960 0.7815 42 1 3.9518 4.5707 0.6246 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361380528.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:53 Heat of formation + Delta-G solvation = -48.151276 kcal Electronic energy + Delta-G solvation = -27957.521745 eV Core-core repulsion = 23868.114221 eV Total energy + Delta-G solvation = -4089.407524 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.07602 -40.15329 -38.97111 -37.85094 -36.72452 -34.58516 -33.91026 -32.98644 -31.91629 -31.35643 -29.20334 -28.29826 -27.31997 -26.05496 -24.27016 -23.21378 -22.45158 -21.91931 -21.04869 -19.82622 -18.54339 -17.91499 -17.50321 -16.69875 -16.62597 -16.13636 -15.87937 -15.51434 -15.13413 -14.92342 -14.73441 -14.42440 -14.20642 -14.08468 -13.88328 -13.70565 -13.25569 -13.12263 -13.01054 -12.79452 -12.56703 -12.43842 -12.17720 -12.10474 -11.71384 -11.65659 -11.09316 -11.02244 -10.88727 -10.74544 -10.42709 -10.12403 -9.98022 -9.71554 -9.45638 -9.40583 -9.07407 -8.28887 -7.98234 -7.34364 -7.09327 -4.78452 0.26695 0.74107 2.06332 2.32583 2.37111 2.56394 2.92250 3.00861 3.13457 3.19577 3.24470 3.73886 3.82612 4.26472 4.38210 4.48488 4.53188 4.68815 4.75904 4.80543 4.88338 4.96349 5.16641 5.22223 5.33643 5.36947 5.43991 5.56224 5.62236 5.77437 5.88613 5.93602 5.95523 6.21553 6.24745 6.27870 6.36200 6.42428 6.50607 6.90321 7.04494 7.16969 7.42591 7.49893 7.65297 7.93558 8.15733 8.35319 8.53378 8.60623 9.36214 9.92232 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018239 B = 0.002659 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.813155 B =10528.688879 C =11900.008158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.351 6.351 3 C 0.513 3.487 4 O -0.503 6.503 5 C -0.143 4.143 6 C 0.002 3.998 7 C -0.145 4.145 8 C 0.546 3.454 9 O -0.467 6.467 10 N -0.658 5.658 11 C 0.369 3.631 12 C -0.323 4.323 13 C 0.128 3.872 14 C -0.438 4.438 15 H 0.096 0.904 16 C 0.084 3.916 17 N -0.802 5.802 18 Si 0.920 3.080 19 H -0.269 1.269 20 H -0.291 1.291 21 H -0.248 1.248 22 C -0.269 4.269 23 C 0.129 3.871 24 N -0.555 5.555 25 C -0.048 4.048 26 C -0.139 4.139 27 C 0.002 3.998 28 C -0.128 4.128 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.104 0.896 32 H 0.153 0.847 33 H 0.407 0.593 34 H 0.113 0.887 35 H 0.288 0.712 36 H 0.111 0.889 37 H 0.131 0.869 38 H 0.135 0.865 39 H 0.140 0.860 40 H 0.080 0.920 41 H 0.096 0.904 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.215 11.490 0.488 21.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.268 6.268 3 C 0.359 3.641 4 O -0.393 6.393 5 C -0.144 4.144 6 C -0.017 4.017 7 C -0.149 4.149 8 C 0.331 3.669 9 O -0.337 6.337 10 N -0.304 5.304 11 C 0.142 3.858 12 C -0.349 4.349 13 C 0.120 3.880 14 C -0.468 4.468 15 H 0.114 0.886 16 C -0.136 4.136 17 N -0.426 5.426 18 Si 0.747 3.253 19 H -0.196 1.196 20 H -0.218 1.218 21 H -0.172 1.172 22 C -0.292 4.292 23 C -0.023 4.023 24 N -0.275 5.275 25 C -0.067 4.067 26 C -0.157 4.157 27 C 0.001 3.999 28 C -0.184 4.184 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.122 0.878 32 H 0.171 0.829 33 H 0.243 0.757 34 H 0.130 0.870 35 H 0.099 0.901 36 H 0.129 0.871 37 H 0.149 0.851 38 H 0.153 0.847 39 H 0.158 0.842 40 H 0.099 0.901 41 H 0.114 0.886 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -19.554 11.062 0.364 22.469 hybrid contribution 1.006 1.165 -0.215 1.554 sum -18.548 12.227 0.149 22.216 Atomic orbital electron populations 1.23306 0.75726 1.04018 1.02555 1.86594 1.23728 1.32394 1.84043 1.21086 0.88882 0.81505 0.72641 1.90778 1.66918 1.35421 1.46172 1.18851 0.89248 0.94225 1.12103 1.21577 0.92270 0.98692 0.89157 1.20079 0.94108 0.93673 1.07026 1.18182 0.82023 0.88581 0.78099 1.90871 1.70846 1.27999 1.44029 1.43382 1.05961 1.09904 1.71187 1.17944 0.87012 0.86152 0.94671 1.21376 0.91607 1.00947 1.20944 1.17706 0.93711 0.90278 0.86312 1.19497 0.89786 0.99878 1.37645 0.88594 1.26185 0.94796 0.98816 0.93805 1.69612 1.09826 1.28366 1.34782 0.86239 0.79025 0.79783 0.80219 1.19557 1.21805 1.17185 1.21956 0.94832 0.99378 1.13071 1.21910 0.91224 0.94302 0.94843 1.67275 1.39365 0.97715 1.23131 1.21669 1.00559 0.91607 0.92840 1.20975 0.92405 0.99012 1.03310 1.20219 0.94077 0.94140 0.91436 1.21210 1.00321 0.93016 1.03830 0.91768 0.91760 0.87790 0.82894 0.75742 0.86956 0.90146 0.87056 0.85109 0.84738 0.84194 0.90143 0.88556 0.91616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.56 101.05 1.07 1.34 16 2 O -0.35 -3.85 9.82 -40.52 -0.40 -4.25 16 3 C 0.51 6.04 7.85 34.61 0.27 6.31 16 4 O -0.50 -6.26 13.07 -19.24 -0.25 -6.51 16 5 C -0.14 -1.67 5.87 -105.04 -0.62 -2.29 16 6 C 0.00 0.03 9.16 -38.76 -0.35 -0.33 16 7 C -0.15 -1.97 5.87 -105.02 -0.62 -2.59 16 8 C 0.55 9.71 7.72 -12.34 -0.10 9.62 16 9 O -0.47 -10.06 14.63 5.33 0.08 -9.98 16 10 N -0.66 -11.93 5.33 -12.36 -0.07 -12.00 16 11 C 0.37 8.29 7.40 -154.77 -1.15 7.14 16 12 C -0.32 -7.50 7.15 -38.47 -0.28 -7.78 16 13 C 0.13 3.16 5.14 -106.55 -0.55 2.61 16 14 C -0.44 -11.31 9.66 -37.65 -0.36 -11.67 16 15 H 0.10 2.59 8.06 -52.49 -0.42 2.16 16 16 C 0.08 2.09 5.47 -17.34 -0.09 2.00 16 17 N -0.80 -20.26 13.92 55.55 0.77 -19.48 16 18 Si 0.92 19.60 24.52 -169.99 -4.17 15.43 16 19 H -0.27 -5.28 6.37 56.52 0.36 -4.92 16 20 H -0.29 -5.97 7.11 56.52 0.40 -5.57 16 21 H -0.25 -5.56 7.00 56.52 0.40 -5.16 16 22 C -0.27 -6.14 9.90 -38.70 -0.38 -6.53 16 23 C 0.13 2.86 11.15 -17.69 -0.20 2.66 16 24 N -0.56 -13.18 7.89 -12.54 -0.10 -13.28 16 25 C -0.05 -0.50 9.53 -39.09 -0.37 -0.88 16 26 C -0.14 -1.25 9.64 -39.70 -0.38 -1.63 16 27 C 0.00 0.02 5.92 -104.12 -0.62 -0.60 16 28 C -0.13 -1.09 8.74 36.01 0.31 -0.78 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.15 2.06 7.20 -52.48 -0.38 1.68 16 33 H 0.41 5.85 6.73 -40.82 -0.27 5.58 16 34 H 0.11 2.48 4.41 -52.49 -0.23 2.25 16 35 H 0.29 6.55 8.29 -40.82 -0.34 6.22 16 36 H 0.11 2.33 8.06 -52.49 -0.42 1.91 16 37 H 0.13 2.48 8.06 -52.48 -0.42 2.06 16 38 H 0.13 1.13 6.40 -52.49 -0.34 0.80 16 39 H 0.14 0.87 8.05 -52.48 -0.42 0.44 16 40 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.10 0.95 5.80 -51.93 -0.30 0.65 16 42 H 0.06 0.43 8.03 -51.93 -0.42 0.01 16 LS Contribution 358.02 15.07 5.40 5.40 Total: -1.00 -31.90 358.02 -7.64 -39.55 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -4.50 Total: 8.49 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: -4.41 Total: -3.37 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: 0.61 Total: -44.76 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -0.57 Total: -20.73 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -4.17 Total: 15.43 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.90 -7.64 -39.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361380528.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.606 kcal (2) G-P(sol) polarization free energy of solvation -31.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds