Wall clock time and date at job start Sat Apr 11 2020 05:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34709 * 117.00104 * 2 1 4 4 O 1.21470 * 119.99756 * 0.02562 * 3 2 1 5 5 C 1.47735 * 119.99790 * 179.97438 * 3 2 1 6 6 C 1.39380 * 120.08075 * 4.20789 * 5 3 2 7 7 C 1.39308 * 119.70112 * 180.24572 * 6 5 3 8 8 C 1.47823 * 120.06933 * 179.76938 * 7 6 5 9 9 O 1.21542 * 120.00543 * 359.72462 * 8 7 6 10 10 N 1.34783 * 119.99673 * 179.72127 * 8 7 6 11 11 C 1.39378 * 120.00146 * 185.08920 * 10 8 7 12 12 C 1.38617 * 119.58298 * 185.60099 * 11 10 8 13 13 C 1.40809 * 118.79470 * 179.70254 * 12 11 10 14 14 C 1.41540 * 120.99555 * 180.25172 * 13 12 11 15 15 H 1.07999 * 119.99814 * 149.16690 * 14 13 12 16 16 C 1.40032 * 120.00369 * 329.16466 * 14 13 12 17 17 N 1.30738 * 120.00448 * 166.36996 * 16 14 13 18 18 Si 1.86799 * 119.99772 * 346.37172 * 16 14 13 19 19 H 1.48502 * 109.47261 * 87.25987 * 18 16 14 20 20 H 1.48502 * 109.47431 * 207.26254 * 18 16 14 21 21 H 1.48508 * 109.47373 * 327.26300 * 18 16 14 22 22 C 1.41182 * 118.00864 * 0.27169 * 13 12 11 23 23 C 1.37588 * 119.01425 * 0.02562 * 22 13 12 24 24 N 1.32071 * 121.11718 * 0.02562 * 23 22 13 25 25 C 1.39727 * 119.85346 * 359.49400 * 7 6 5 26 26 C 1.38056 * 120.15283 * 0.23416 * 25 7 6 27 27 C 1.38092 * 120.30566 * 359.97438 * 26 25 7 28 28 C 1.50702 * 119.92755 * 180.02562 * 27 26 25 29 29 H 1.08997 * 109.47280 * 300.00309 * 1 2 3 30 30 H 1.09003 * 109.46459 * 60.00051 * 1 2 3 31 31 H 1.08996 * 109.47213 * 179.97438 * 1 2 3 32 32 H 1.08003 * 120.15207 * 359.97438 * 6 5 3 33 33 H 0.97002 * 119.99842 * 5.08792 * 10 8 7 34 34 H 1.07997 * 120.60426 * 359.97189 * 12 11 10 35 35 H 0.96997 * 120.00544 * 180.02562 * 17 16 14 36 36 H 1.07995 * 120.48896 * 180.02562 * 22 13 12 37 37 H 1.08004 * 119.43683 * 179.97438 * 23 22 13 38 38 H 1.08001 * 119.92009 * 180.25363 * 25 7 6 39 39 H 1.08006 * 119.84554 * 180.02562 * 26 25 7 40 40 H 1.09001 * 109.47204 * 97.07672 * 28 27 26 41 41 H 1.08994 * 109.46775 * 217.07606 * 28 27 26 42 42 H 1.09000 * 109.47313 * 337.07396 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5390 1.2775 0.0006 6 6 4.2995 0.1128 -0.0874 7 6 5.6902 0.1944 -0.0810 8 6 6.5048 -1.0360 -0.1688 9 8 5.9614 -2.1207 -0.2415 10 7 7.8502 -0.9549 -0.1681 11 6 8.6176 -2.1029 -0.3573 12 6 9.9969 -2.0311 -0.2394 13 6 10.7556 -3.2022 -0.4276 14 6 12.1662 -3.1832 -0.3129 15 1 12.6916 -4.0607 0.0341 16 6 12.8806 -2.0268 -0.6493 17 7 14.1346 -1.9080 -0.2993 18 14 12.0417 -0.6537 -1.5982 19 1 11.3704 0.2674 -0.6464 20 1 13.0551 0.0970 -2.3823 21 1 11.0327 -1.2340 -2.5205 22 6 10.0671 -4.3960 -0.7347 23 6 8.6954 -4.3677 -0.8374 24 7 8.0202 -3.2475 -0.6544 25 6 6.3133 1.4423 0.0027 26 6 5.5541 2.5925 0.0839 27 6 4.1751 2.5187 0.0824 28 6 3.3547 3.7797 0.1708 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.8130 -0.8490 -0.1558 33 1 8.2843 -0.0976 -0.0360 34 1 10.4805 -1.0948 -0.0030 35 1 14.6294 -1.1068 -0.5320 36 1 10.6093 -5.3175 -0.8868 37 1 8.1619 -5.2769 -1.0725 38 1 7.3914 1.5071 0.0036 39 1 6.0409 3.5545 0.1480 40 1 3.0480 4.0846 -0.8298 41 1 2.4708 3.5960 0.7815 42 1 3.9518 4.5707 0.6246 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361380528.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:52 Heat of formation + Delta-G solvation = -66.863422 kcal Electronic energy + Delta-G solvation = -27958.333164 eV Core-core repulsion = 23868.114221 eV Total energy + Delta-G solvation = -4090.218944 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.01582 -41.46341 -40.23867 -39.21397 -37.59239 -36.22732 -35.65255 -33.92146 -33.20543 -32.77177 -30.76781 -29.06983 -28.19217 -27.87933 -25.21182 -24.35353 -24.21170 -22.80962 -22.43410 -21.16911 -19.68704 -19.59487 -18.58180 -17.86671 -17.50724 -17.38238 -17.35977 -16.68368 -16.35916 -16.28407 -16.20806 -15.82598 -15.52229 -15.02049 -14.94135 -14.76377 -14.72087 -14.54221 -14.44951 -13.96036 -13.49704 -13.31941 -13.06634 -13.01699 -12.89399 -12.73382 -12.65441 -12.63722 -12.56242 -11.84405 -11.83960 -11.59557 -11.36728 -11.22529 -11.06346 -10.28957 -10.15462 -9.96515 -9.74329 -9.04363 -8.94482 -6.72940 -0.60227 -0.20385 0.56787 0.75115 1.22710 1.26307 1.41541 1.49535 1.61267 1.86415 1.90151 2.10240 2.60717 2.74405 3.31645 3.48463 3.50527 3.71550 3.76272 3.96247 4.00248 4.16446 4.25144 4.31777 4.35081 4.50116 4.59300 4.63229 4.65230 4.68503 4.73954 4.78406 4.80777 4.94969 5.07364 5.11342 5.12316 5.22314 5.27421 5.43859 5.47837 5.63855 5.69498 6.00860 6.19085 6.36953 6.51471 6.58223 6.68496 7.08195 7.63133 8.11856 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018239 B = 0.002659 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.813155 B =10528.688879 C =11900.008158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.366 6.366 3 C 0.510 3.490 4 O -0.513 6.513 5 C -0.154 4.154 6 C -0.004 4.004 7 C -0.162 4.162 8 C 0.547 3.453 9 O -0.513 6.513 10 N -0.650 5.650 11 C 0.367 3.633 12 C -0.328 4.328 13 C 0.113 3.887 14 C -0.469 4.469 15 H 0.065 0.935 16 C 0.050 3.950 17 N -0.835 5.835 18 Si 0.968 3.032 19 H -0.235 1.235 20 H -0.276 1.276 21 H -0.266 1.266 22 C -0.281 4.281 23 C 0.130 3.870 24 N -0.575 5.575 25 C -0.039 4.039 26 C -0.125 4.125 27 C 0.007 3.993 28 C -0.125 4.125 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.127 0.873 32 H 0.137 0.863 33 H 0.424 0.576 34 H 0.126 0.874 35 H 0.299 0.701 36 H 0.122 0.878 37 H 0.161 0.839 38 H 0.160 0.840 39 H 0.181 0.819 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.375 14.771 0.307 24.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.282 6.282 3 C 0.357 3.643 4 O -0.405 6.405 5 C -0.156 4.156 6 C -0.023 4.023 7 C -0.165 4.165 8 C 0.335 3.665 9 O -0.386 6.386 10 N -0.298 5.298 11 C 0.138 3.862 12 C -0.353 4.353 13 C 0.105 3.895 14 C -0.500 4.500 15 H 0.084 0.916 16 C -0.167 4.167 17 N -0.461 5.461 18 Si 0.791 3.209 19 H -0.160 1.160 20 H -0.202 1.202 21 H -0.191 1.191 22 C -0.304 4.304 23 C -0.022 4.022 24 N -0.294 5.294 25 C -0.057 4.057 26 C -0.143 4.143 27 C 0.006 3.994 28 C -0.181 4.181 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.145 0.855 32 H 0.155 0.845 33 H 0.264 0.736 34 H 0.143 0.857 35 H 0.110 0.890 36 H 0.140 0.860 37 H 0.178 0.822 38 H 0.177 0.823 39 H 0.198 0.802 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -20.708 14.377 0.210 25.210 hybrid contribution 1.219 0.099 -0.133 1.230 sum -19.489 14.475 0.077 24.277 Atomic orbital electron populations 1.23594 0.73939 1.05760 1.02991 1.86588 1.25626 1.32210 1.83778 1.21170 0.89077 0.81588 0.72445 1.90769 1.67176 1.35647 1.46865 1.18958 0.89240 0.94570 1.12801 1.21436 0.92331 0.98660 0.89901 1.19722 0.93620 0.92992 1.10214 1.18796 0.81776 0.89496 0.76417 1.90840 1.71533 1.30161 1.46113 1.43352 1.06133 1.09504 1.70770 1.18173 0.87334 0.87011 0.93647 1.21467 0.91963 1.00969 1.20915 1.17904 0.93451 0.91700 0.86443 1.19472 0.90613 0.99825 1.40059 0.91646 1.26885 0.95236 1.00549 0.94065 1.69631 1.10898 1.29688 1.35860 0.85507 0.78208 0.77842 0.79316 1.15968 1.20249 1.19086 1.22151 0.95406 0.99515 1.13354 1.22377 0.91097 0.95101 0.93650 1.67412 1.40045 0.98545 1.23439 1.21935 1.01936 0.90551 0.91319 1.21378 0.91652 1.00081 1.01140 1.20579 0.95002 0.93998 0.89778 1.21222 1.00020 0.92915 1.03937 0.91273 0.91380 0.85509 0.84547 0.73592 0.85689 0.89049 0.86038 0.82190 0.82271 0.80188 0.89839 0.89990 0.88764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.56 113.37 1.20 1.61 16 2 O -0.37 -7.94 9.82 -56.18 -0.55 -8.49 16 3 C 0.51 11.68 7.85 70.33 0.55 12.23 16 4 O -0.51 -12.25 13.07 19.93 0.26 -11.99 16 5 C -0.15 -3.41 5.87 -20.13 -0.12 -3.52 16 6 C 0.00 -0.10 9.16 22.80 0.21 0.10 16 7 C -0.16 -4.13 5.87 -20.12 -0.12 -4.25 16 8 C 0.55 19.00 7.72 86.78 0.67 19.67 16 9 O -0.51 -22.29 14.63 -3.85 -0.06 -22.34 16 10 N -0.65 -22.37 5.33 -311.30 -1.66 -24.03 16 11 C 0.37 16.07 7.40 132.78 0.98 17.05 16 12 C -0.33 -14.89 7.15 22.99 0.16 -14.73 16 13 C 0.11 5.64 5.14 -21.11 -0.11 5.53 16 14 C -0.47 -24.96 9.66 23.52 0.23 -24.73 16 15 H 0.07 3.74 8.06 -2.91 -0.02 3.72 16 16 C 0.05 2.48 5.47 85.29 0.47 2.95 16 17 N -0.84 -42.62 13.92 21.84 0.30 -42.32 16 18 Si 0.97 38.84 24.52 68.60 1.68 40.52 16 19 H -0.24 -8.10 6.37 99.48 0.63 -7.47 16 20 H -0.28 -10.36 7.11 99.48 0.71 -9.65 16 21 H -0.27 -11.44 7.00 99.48 0.70 -10.74 16 22 C -0.28 -12.94 9.90 22.84 0.23 -12.72 16 23 C 0.13 5.69 11.15 84.50 0.94 6.63 16 24 N -0.57 -27.01 7.89 -193.58 -1.53 -28.54 16 25 C -0.04 -0.67 9.53 22.59 0.22 -0.45 16 26 C -0.13 -1.66 9.64 22.19 0.21 -1.45 16 27 C 0.01 0.12 5.92 -19.54 -0.12 0.00 16 28 C -0.13 -1.71 8.74 71.24 0.62 -1.09 16 29 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.14 3.84 7.20 -2.91 -0.02 3.82 16 33 H 0.42 10.88 6.73 -92.71 -0.62 10.25 16 34 H 0.13 5.24 4.41 -2.91 -0.01 5.22 16 35 H 0.30 13.52 8.29 -92.71 -0.77 12.75 16 36 H 0.12 5.19 8.06 -2.91 -0.02 5.17 16 37 H 0.16 5.89 8.06 -2.91 -0.02 5.87 16 38 H 0.16 1.89 6.40 -2.91 -0.02 1.88 16 39 H 0.18 1.02 8.05 -2.91 -0.02 1.00 16 40 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.08 1.43 5.80 -2.39 -0.01 1.41 16 42 H 0.09 0.76 8.03 -2.39 -0.02 0.75 16 Total: -1.00 -71.49 358.02 5.07 -66.42 By element: Atomic # 1 Polarization: 27.54 SS G_CDS: 0.39 Total: 27.92 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: 6.23 Total: 2.84 kcal Atomic # 7 Polarization: -92.01 SS G_CDS: -2.88 Total: -94.89 kcal Atomic # 8 Polarization: -42.47 SS G_CDS: -0.35 Total: -42.82 kcal Atomic # 14 Polarization: 38.84 SS G_CDS: 1.68 Total: 40.52 kcal Total: -71.49 5.07 -66.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361380528.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.443 kcal (2) G-P(sol) polarization free energy of solvation -71.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds