Wall clock time and date at job start Sat Apr 11 2020 05:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45211 * 1 3 3 C 1.34705 * 116.99996 * 2 1 4 4 O 1.21463 * 120.00079 * 359.97438 * 3 2 1 5 5 C 1.47747 * 119.99699 * 180.02562 * 3 2 1 6 6 C 1.39757 * 120.07447 * 179.97438 * 5 3 2 7 7 C 1.38049 * 120.13813 * 180.02562 * 6 5 3 8 8 C 1.50706 * 119.84568 * 180.02562 * 7 6 5 9 9 C 1.38099 * 120.30721 * 359.97438 * 7 6 5 10 10 C 1.39693 * 120.15350 * 359.97438 * 9 7 6 11 11 C 1.47819 * 120.07318 * 180.02562 * 10 9 7 12 12 O 1.21555 * 120.00117 * 0.02562 * 11 10 9 13 13 N 1.34772 * 119.99894 * 180.02562 * 11 10 9 14 14 C 1.39386 * 119.99836 * 174.31384 * 13 11 10 15 15 C 1.38626 * 119.58216 * 185.44083 * 14 13 11 16 16 C 1.40798 * 118.79549 * 180.02562 * 15 14 13 17 17 C 1.41543 * 120.99747 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00103 * 212.52978 * 17 16 15 19 19 C 1.40031 * 120.00041 * 32.53555 * 17 16 15 20 20 N 1.30748 * 119.99913 * 357.27369 * 19 17 16 21 21 Si 1.86793 * 120.00442 * 177.28066 * 19 17 16 22 22 H 1.48504 * 109.46751 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47591 * 119.99473 * 21 19 17 24 24 H 1.48498 * 109.47510 * 239.99768 * 21 19 17 25 25 C 1.41185 * 118.00748 * 359.97438 * 16 15 14 26 26 C 1.37586 * 119.02032 * 0.02562 * 25 16 15 27 27 N 1.32079 * 121.11000 * 359.72955 * 26 25 16 28 28 C 1.39339 * 119.85282 * 0.02562 * 10 9 7 29 29 H 1.09000 * 109.46892 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46769 * 300.00389 * 1 2 3 31 31 H 1.08999 * 109.46825 * 59.99650 * 1 2 3 32 32 H 1.07996 * 119.93312 * 359.97438 * 6 5 3 33 33 H 1.09001 * 109.47276 * 269.97985 * 8 7 6 34 34 H 1.09003 * 109.46859 * 29.97936 * 8 7 6 35 35 H 1.08996 * 109.47147 * 149.97859 * 8 7 6 36 36 H 1.08004 * 119.92088 * 180.28033 * 9 7 6 37 37 H 0.96996 * 120.00645 * 354.30960 * 13 11 10 38 38 H 1.08000 * 120.60311 * 0.02562 * 15 14 13 39 39 H 0.96996 * 120.00248 * 179.97438 * 20 19 17 40 40 H 1.08003 * 120.49004 * 180.02562 * 25 16 15 41 41 H 1.08002 * 119.44149 * 179.97438 * 26 25 16 42 42 H 1.07998 * 120.15058 * 179.97438 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0637 1.2002 0.0000 4 8 1.4021 2.2189 -0.0005 5 6 3.5391 1.2775 -0.0006 6 6 4.1753 2.5219 -0.0011 7 6 5.5538 2.5956 -0.0022 8 6 6.2329 3.9409 -0.0022 9 6 6.3133 1.4422 -0.0022 10 6 5.6905 0.1918 -0.0006 11 6 6.5053 -1.0415 0.0000 12 8 7.7186 -0.9685 -0.0005 13 7 5.9028 -2.2471 0.0010 14 6 6.6657 -3.4075 -0.1181 15 6 6.0314 -4.6351 -0.2300 16 6 6.8182 -5.7967 -0.3489 17 6 6.2194 -7.0739 -0.4654 18 1 6.7103 -7.9405 -0.0479 19 6 4.9906 -7.2138 -1.1221 20 7 4.3706 -6.1580 -1.5808 21 14 4.2370 -8.9087 -1.3427 22 1 5.1303 -9.9299 -0.7389 23 1 2.9118 -8.9521 -0.6740 24 1 4.0702 -9.1917 -2.7909 25 6 8.2223 -5.6493 -0.3484 26 6 8.7611 -4.3886 -0.2323 27 7 7.9878 -3.3230 -0.1276 28 6 4.2995 0.1098 0.0005 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 3.5872 3.4277 -0.0015 33 1 6.3962 4.2656 -1.0298 34 1 5.6024 4.6662 0.5122 35 1 7.1914 3.8641 0.5112 36 1 7.3914 1.5072 0.0015 37 1 4.9383 -2.3073 0.0847 38 1 4.9534 -4.6993 -0.2261 39 1 3.5196 -6.2549 -2.0360 40 1 8.8641 -6.5134 -0.4377 41 1 9.8344 -4.2681 -0.2307 42 1 3.8130 -0.8544 0.0013 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361468057.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:00 Heat of formation + Delta-G solvation = -73.645700 kcal Electronic energy + Delta-G solvation = -27963.113187 eV Core-core repulsion = 23872.600142 eV Total energy + Delta-G solvation = -4090.513045 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.92857 -41.34379 -40.18254 -39.12664 -37.55959 -36.16638 -35.61483 -34.14181 -32.79920 -32.37580 -30.39978 -28.90413 -27.92400 -27.81094 -25.68130 -24.84697 -23.82807 -22.94714 -21.75814 -21.12137 -19.61441 -19.07523 -18.57629 -17.78888 -17.46238 -17.43010 -17.22037 -16.93790 -16.29938 -16.15154 -16.03902 -15.79854 -15.41272 -14.85422 -14.83831 -14.63836 -14.34990 -14.28998 -14.20093 -14.14777 -13.23224 -13.18831 -12.99642 -12.92710 -12.85899 -12.79058 -12.71884 -12.64149 -12.16030 -11.85968 -11.83545 -11.77504 -11.53678 -11.21076 -11.17392 -10.29530 -9.94587 -9.85438 -9.67872 -8.88534 -8.53059 -6.58847 -0.59638 -0.24974 0.76090 1.00291 1.24372 1.42915 1.54459 1.57930 1.58136 1.92156 1.99688 2.22778 2.65156 2.86448 3.29225 3.49132 3.62353 3.70800 3.93340 4.01802 4.06667 4.17096 4.25455 4.32440 4.33060 4.54107 4.69971 4.71714 4.75720 4.80201 4.85898 4.90290 4.94482 5.07652 5.08935 5.17698 5.21487 5.28183 5.34552 5.46035 5.59312 5.61557 5.95181 6.12581 6.42816 6.54208 6.54801 6.79282 6.86701 7.15803 7.76919 8.34444 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010507 B = 0.003190 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.174476 B = 8775.543685 C =11330.045849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.360 6.360 3 C 0.515 3.485 4 O -0.526 6.526 5 C -0.137 4.137 6 C -0.027 4.027 7 C -0.093 4.093 8 C -0.113 4.113 9 C -0.029 4.029 10 C -0.145 4.145 11 C 0.543 3.457 12 O -0.515 6.515 13 N -0.646 5.646 14 C 0.328 3.672 15 C -0.246 4.246 16 C 0.111 3.889 17 C -0.485 4.485 18 H 0.083 0.917 19 C 0.034 3.966 20 N -0.825 5.825 21 Si 0.992 3.008 22 H -0.259 1.259 23 H -0.262 1.262 24 H -0.269 1.269 25 C -0.287 4.287 26 C 0.109 3.891 27 N -0.572 5.572 28 C -0.033 4.033 29 H 0.128 0.872 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.160 0.840 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.143 0.857 37 H 0.421 0.579 38 H 0.134 0.866 39 H 0.289 0.711 40 H 0.119 0.881 41 H 0.153 0.847 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.069 14.644 2.049 16.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.276 6.276 3 C 0.361 3.639 4 O -0.417 6.417 5 C -0.138 4.138 6 C -0.045 4.045 7 C -0.093 4.093 8 C -0.169 4.169 9 C -0.048 4.048 10 C -0.149 4.149 11 C 0.331 3.669 12 O -0.389 6.389 13 N -0.293 5.293 14 C 0.102 3.898 15 C -0.271 4.271 16 C 0.103 3.897 17 C -0.516 4.516 18 H 0.101 0.899 19 C -0.181 4.181 20 N -0.452 5.452 21 Si 0.813 3.187 22 H -0.183 1.183 23 H -0.187 1.187 24 H -0.194 1.194 25 C -0.310 4.310 26 C -0.045 4.045 27 N -0.292 5.292 28 C -0.052 4.052 29 H 0.146 0.854 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.177 0.823 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.098 0.902 36 H 0.161 0.839 37 H 0.260 0.740 38 H 0.152 0.848 39 H 0.100 0.900 40 H 0.137 0.863 41 H 0.170 0.830 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -7.277 15.950 1.993 17.645 hybrid contribution -1.303 -1.838 -0.296 2.272 sum -8.580 14.113 1.697 16.603 Atomic orbital electron populations 1.23623 0.73874 1.05872 1.03006 1.86568 1.25639 1.31784 1.83605 1.21155 0.89016 0.81652 0.72041 1.90808 1.67102 1.36559 1.47206 1.19024 0.89043 0.94943 1.10827 1.21564 0.94306 0.96842 0.91824 1.20097 0.92626 0.96703 0.99889 1.20910 1.01094 0.90808 1.04091 1.21596 1.01587 0.90147 0.91488 1.19790 0.93332 0.93180 1.08566 1.18791 0.87843 0.83572 0.76708 1.90823 1.14663 1.86700 1.46698 1.43321 1.10853 1.03785 1.71375 1.18440 0.88989 0.85563 0.96782 1.21818 1.01286 0.90561 1.13437 1.18055 0.91426 0.93932 0.86313 1.19841 1.04496 0.93863 1.33417 0.89929 1.26794 0.95860 1.02876 0.92562 1.69750 1.14771 1.32415 1.28287 0.84999 0.78420 0.76578 0.78750 1.18261 1.18704 1.19390 1.22219 0.95734 0.97949 1.15124 1.22255 0.98966 0.87687 0.95547 1.67324 1.04033 1.33535 1.24283 1.21642 0.92000 0.99206 0.92324 0.85360 0.91248 0.91406 0.82290 0.89429 0.89268 0.90202 0.83894 0.74028 0.84841 0.90001 0.86285 0.82957 0.83474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.57 113.37 1.20 1.64 16 2 O -0.36 -7.93 9.81 -56.15 -0.55 -8.48 16 3 C 0.52 12.31 7.90 70.34 0.56 12.86 16 4 O -0.53 -14.00 16.13 19.95 0.32 -13.68 16 5 C -0.14 -3.13 5.87 -20.13 -0.12 -3.25 16 6 C -0.03 -0.52 9.24 22.59 0.21 -0.31 16 7 C -0.09 -1.71 5.87 -19.94 -0.12 -1.83 16 8 C -0.11 -1.29 10.00 71.24 0.71 -0.58 16 9 C -0.03 -0.71 9.24 22.59 0.21 -0.50 16 10 C -0.15 -4.20 5.87 -20.13 -0.12 -4.32 16 11 C 0.54 21.00 7.73 86.78 0.67 21.67 16 12 O -0.51 -23.76 14.59 -3.89 -0.06 -23.82 16 13 N -0.65 -25.88 5.33 -311.29 -1.66 -27.54 16 14 C 0.33 16.11 7.41 132.78 0.98 17.09 16 15 C -0.25 -12.59 8.61 22.99 0.20 -12.40 16 16 C 0.11 5.88 5.59 -21.11 -0.12 5.76 16 17 C -0.48 -24.87 9.12 23.52 0.21 -24.65 16 18 H 0.08 4.06 7.85 -2.91 -0.02 4.04 16 19 C 0.03 1.61 5.43 85.29 0.46 2.07 16 20 N -0.83 -40.18 10.59 21.84 0.23 -39.95 16 21 Si 0.99 36.02 29.56 68.60 2.03 38.05 16 22 H -0.26 -9.25 7.11 99.48 0.71 -8.55 16 23 H -0.26 -9.04 7.11 99.48 0.71 -8.33 16 24 H -0.27 -9.53 7.11 99.48 0.71 -8.82 16 25 C -0.29 -14.02 9.90 22.84 0.23 -13.80 16 26 C 0.11 5.20 11.15 84.50 0.94 6.15 16 27 N -0.57 -29.33 7.85 -193.57 -1.52 -30.85 16 28 C -0.03 -0.82 9.10 22.80 0.21 -0.61 16 29 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.16 2.50 7.64 -2.91 -0.02 2.48 16 33 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.09 0.74 8.08 -2.39 -0.02 0.72 16 35 H 0.08 0.85 8.08 -2.39 -0.02 0.83 16 36 H 0.14 3.51 7.64 -2.91 -0.02 3.49 16 37 H 0.42 14.02 6.74 -92.71 -0.63 13.39 16 38 H 0.13 6.83 6.13 -2.91 -0.02 6.81 16 39 H 0.29 12.62 8.29 -92.71 -0.77 11.85 16 40 H 0.12 5.27 8.06 -2.91 -0.02 5.25 16 41 H 0.15 6.18 8.06 -2.91 -0.02 6.15 16 42 H 0.15 3.43 5.96 -2.91 -0.02 3.41 16 Total: -1.00 -70.00 368.85 5.58 -64.43 By element: Atomic # 1 Polarization: 36.38 SS G_CDS: 0.46 Total: 36.84 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: 6.32 Total: 5.00 kcal Atomic # 7 Polarization: -95.39 SS G_CDS: -2.95 Total: -98.34 kcal Atomic # 8 Polarization: -45.69 SS G_CDS: -0.29 Total: -45.98 kcal Atomic # 14 Polarization: 36.02 SS G_CDS: 2.03 Total: 38.05 kcal Total: -70.00 5.58 -64.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361468057.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.218 kcal (2) G-P(sol) polarization free energy of solvation -70.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds