Wall clock time and date at job start Sat Apr 11 2020 05:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86803 * 119.99862 * 2 1 4 4 H 1.48507 * 109.47015 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47098 * 299.99709 * 3 2 1 6 6 H 1.48495 * 109.47297 * 60.00349 * 3 2 1 7 7 C 1.40026 * 120.00267 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00405 * 179.97438 * 7 2 1 9 9 C 1.41341 * 119.99590 * 0.02562 * 7 2 1 10 10 C 1.40612 * 119.78671 * 180.02562 * 9 7 2 11 11 C 1.38307 * 119.12998 * 179.97438 * 10 9 7 12 12 C 1.38696 * 118.66809 * 359.74823 * 11 10 9 13 13 C 1.39636 * 119.49562 * 0.47766 * 12 11 10 14 14 N 1.39269 * 119.57312 * 179.78840 * 13 12 11 15 15 C 1.34778 * 119.99753 * 174.71192 * 14 13 12 16 16 O 1.21270 * 119.99985 * 5.15805 * 15 14 13 17 17 C 1.50698 * 119.99956 * 185.14538 * 15 14 13 18 18 C 1.53002 * 109.46998 * 180.02562 * 17 15 14 19 19 H 1.08997 * 109.70667 * 54.41943 * 18 17 15 20 20 C 1.53472 * 109.70909 * 175.00498 * 18 17 15 21 21 O 1.43170 * 108.25067 * 179.42415 * 20 18 17 22 22 C 1.36103 * 116.71238 * 313.81983 * 21 20 18 23 23 C 1.38701 * 119.40261 * 197.17889 * 22 21 20 24 24 C 1.38201 * 120.06990 * 180.21722 * 23 22 21 25 25 C 1.38251 * 120.10966 * 359.93226 * 24 23 22 26 26 C 1.38186 * 120.11662 * 359.97438 * 25 24 23 27 27 C 1.38708 * 120.06633 * 0.02562 * 26 25 24 28 28 O 1.36099 * 119.39252 * 180.27818 * 27 26 25 29 29 N 1.31930 * 120.85019 * 359.51226 * 13 12 11 30 30 H 0.97002 * 119.99789 * 359.97438 * 1 2 3 31 31 H 1.08006 * 120.43522 * 0.02562 * 10 9 7 32 32 H 1.07999 * 120.66362 * 179.97438 * 11 10 9 33 33 H 1.08005 * 120.25350 * 180.24543 * 12 11 10 34 34 H 0.96997 * 120.00023 * 354.99656 * 14 13 12 35 35 H 1.08991 * 109.47466 * 300.00699 * 17 15 14 36 36 H 1.09002 * 109.46753 * 60.00848 * 17 15 14 37 37 H 1.09003 * 109.70775 * 299.11062 * 20 18 17 38 38 H 1.08999 * 109.71043 * 59.73165 * 20 18 17 39 39 H 1.08004 * 119.96444 * 0.16441 * 23 22 21 40 40 H 1.08002 * 119.94358 * 179.97438 * 24 23 22 41 41 H 1.08004 * 119.93670 * 179.97438 * 25 24 23 42 42 H 1.08000 * 119.96770 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7015 1.3464 -0.0006 5 1 1.8827 2.3965 -1.2126 6 1 1.8827 2.3964 1.2125 7 6 2.0076 -1.2126 0.0005 8 1 3.0876 -1.2127 0.0001 9 6 1.3009 -2.4367 0.0005 10 6 2.0084 -3.6518 0.0016 11 6 1.3032 -4.8415 0.0022 12 6 -0.0829 -4.7934 0.0069 13 6 -0.7278 -3.5549 0.0009 14 7 -2.1196 -3.5047 0.0012 15 6 -2.7511 -2.3183 0.1031 16 8 -2.1108 -1.2884 0.1002 17 6 -4.2528 -2.2717 0.2202 18 6 -4.7115 -0.8155 0.3204 19 1 -4.3176 -0.2473 -0.5223 20 6 -6.2450 -0.7543 0.3143 21 8 -6.6394 0.6177 0.4226 22 6 -6.0050 1.3639 1.3677 23 6 -6.5638 2.5667 1.7737 24 6 -5.9291 3.3376 2.7291 25 6 -4.7365 2.9116 3.2838 26 6 -4.1754 1.7133 2.8852 27 6 -4.8073 0.9348 1.9267 28 8 -4.2454 -0.2456 1.5484 29 7 -0.0357 -2.4317 0.0004 30 1 -0.4850 0.8401 0.0004 31 1 3.0885 -3.6560 0.0029 32 1 1.8215 -5.7890 0.0026 33 1 -0.6591 -5.7069 0.0115 34 1 -2.6345 -4.3238 -0.0677 35 1 -4.7004 -2.7336 -0.6596 36 1 -4.5645 -2.8133 1.1133 37 1 -6.6259 -1.1739 -0.6168 38 1 -6.6387 -1.3178 1.1602 39 1 -7.4955 2.9017 1.3421 40 1 -6.3657 4.2741 3.0434 41 1 -4.2426 3.5164 4.0299 42 1 -3.2435 1.3830 3.3198 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361493443.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:06 Heat of formation + Delta-G solvation = -17.746533 kcal Electronic energy + Delta-G solvation = -29258.992867 eV Core-core repulsion = 25170.903791 eV Total energy + Delta-G solvation = -4088.089075 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.24029 -39.28891 -37.87950 -37.40255 -36.96362 -34.11701 -32.98551 -32.78025 -30.62163 -30.30718 -29.51016 -28.78582 -27.08955 -25.49933 -23.94470 -22.71328 -21.93369 -21.18935 -20.52492 -19.42550 -18.67447 -17.77460 -17.47285 -16.78300 -16.14555 -16.07473 -15.21072 -15.01896 -14.82014 -14.66334 -14.48103 -14.43078 -14.18103 -13.80273 -13.70246 -13.56220 -13.20022 -12.76879 -12.64724 -12.45897 -11.97209 -11.90354 -11.72597 -11.53604 -11.19106 -11.13278 -10.93041 -10.86499 -10.62811 -10.46915 -10.33404 -9.90590 -9.66664 -9.01427 -8.96880 -8.60413 -7.99515 -7.95799 -7.20312 -6.95937 -6.12466 -4.38696 1.32749 1.36404 2.77967 3.03931 3.07439 3.18917 3.22127 3.22860 3.27218 3.67642 3.74452 3.79499 4.07739 4.27924 4.65590 4.66680 4.79180 4.93283 4.98563 5.07386 5.22805 5.26497 5.33723 5.42510 5.51048 5.56119 5.75341 5.92774 6.05337 6.12095 6.16760 6.25952 6.48986 6.49044 6.66055 6.68198 6.83891 6.85600 6.98764 7.24856 7.53009 7.56014 7.63137 7.81845 8.06757 8.20872 8.47239 8.75335 9.06151 9.26510 10.25580 10.49349 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011264 B = 0.003968 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2485.283491 B = 7055.512753 C = 9047.965119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.651 5.651 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.424 4.424 8 H 0.082 0.918 9 C 0.271 3.729 10 C -0.306 4.306 11 C -0.037 4.037 12 C -0.359 4.359 13 C 0.373 3.627 14 N -0.668 5.668 15 C 0.468 3.532 16 O -0.393 6.393 17 C -0.135 4.135 18 C 0.072 3.928 19 H 0.095 0.905 20 C 0.026 3.974 21 O -0.308 6.308 22 C 0.041 3.959 23 C -0.117 4.117 24 C -0.126 4.126 25 C -0.116 4.116 26 C -0.112 4.112 27 C 0.067 3.933 28 O -0.283 6.283 29 N -0.473 5.473 30 H 0.272 0.728 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.398 0.602 35 H 0.108 0.892 36 H 0.098 0.902 37 H 0.121 0.879 38 H 0.076 0.924 39 H 0.130 0.870 40 H 0.128 0.872 41 H 0.129 0.871 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.268 1.255 2.603 15.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.270 5.270 2 C -0.172 4.172 3 Si 0.718 3.282 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.455 4.455 8 H 0.100 0.900 9 C 0.145 3.855 10 C -0.329 4.329 11 C -0.061 4.061 12 C -0.384 4.384 13 C 0.134 3.866 14 N -0.316 5.316 15 C 0.248 3.752 16 O -0.255 6.255 17 C -0.175 4.175 18 C 0.014 3.986 19 H 0.113 0.887 20 C -0.050 4.050 21 O -0.223 6.223 22 C -0.004 4.004 23 C -0.135 4.135 24 C -0.144 4.144 25 C -0.134 4.134 26 C -0.131 4.131 27 C 0.021 3.979 28 O -0.197 6.197 29 N -0.192 5.192 30 H 0.083 0.917 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.108 0.892 34 H 0.231 0.769 35 H 0.126 0.874 36 H 0.116 0.884 37 H 0.139 0.861 38 H 0.094 0.906 39 H 0.148 0.852 40 H 0.146 0.854 41 H 0.147 0.853 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -15.451 3.010 2.576 15.951 hybrid contribution 0.534 -0.904 -0.137 1.059 sum -14.917 2.107 2.439 15.261 Atomic orbital electron populations 1.70315 1.05674 1.27310 1.23697 1.26168 0.95133 1.00524 0.95348 0.86496 0.80929 0.82376 0.78414 1.18590 1.20100 1.20018 1.19614 0.94070 0.89364 1.42432 0.89959 1.18393 0.87190 0.91951 0.87916 1.21625 0.98540 0.93555 1.19152 1.20559 0.93217 0.96504 0.95829 1.20484 0.94791 0.94937 1.28229 1.18604 0.83300 0.90910 0.93803 1.43393 1.05149 1.09002 1.74015 1.20411 0.88729 0.85250 0.80765 1.91187 1.64914 1.30672 1.38740 1.21703 0.96388 0.94728 1.04701 1.22811 0.92760 0.95384 0.87598 0.88729 1.23687 0.95199 0.81494 1.04588 1.86270 1.60722 1.22092 1.53203 1.18935 0.92168 0.94611 0.94697 1.20367 1.00874 0.93401 0.98898 1.20844 0.96133 0.99960 0.97468 1.20910 0.96114 0.95722 1.00666 1.20560 1.00531 0.93719 0.98269 1.19014 0.91540 0.88802 0.98497 1.86485 1.61415 1.32883 1.38874 1.68700 1.07007 1.23232 1.20307 0.91661 0.88611 0.88679 0.89166 0.76898 0.87421 0.88385 0.86108 0.90609 0.85208 0.85417 0.85305 0.84625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.65 -18.18 8.99 55.55 0.50 -17.68 16 2 C 0.06 1.53 5.50 -17.35 -0.10 1.44 16 3 Si 0.89 19.56 29.56 -169.99 -5.02 14.54 16 4 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.42 -11.78 9.14 -37.73 -0.34 -12.12 16 8 H 0.08 2.15 7.85 -52.49 -0.41 1.74 16 9 C 0.27 7.65 6.55 -85.00 -0.56 7.10 16 10 C -0.31 -7.76 9.83 -38.66 -0.38 -8.14 16 11 C -0.04 -0.84 10.15 -39.39 -0.40 -1.24 16 12 C -0.36 -8.04 9.95 -38.89 -0.39 -8.43 16 13 C 0.37 9.03 7.43 -154.97 -1.15 7.88 16 14 N -0.67 -12.73 5.38 -11.40 -0.06 -12.79 16 15 C 0.47 9.02 7.68 -10.99 -0.08 8.94 16 16 O -0.39 -9.66 11.24 -7.26 -0.08 -9.74 16 17 C -0.13 -1.70 5.43 -27.88 -0.15 -1.86 16 18 C 0.07 1.03 2.55 -26.49 -0.07 0.96 16 19 H 0.09 1.54 7.94 -51.93 -0.41 1.13 16 20 C 0.03 0.29 6.56 37.40 0.25 0.53 16 21 O -0.31 -4.22 10.42 -32.86 -0.34 -4.56 16 22 C 0.04 0.60 6.49 -39.14 -0.25 0.34 16 23 C -0.12 -1.45 9.96 -39.42 -0.39 -1.84 16 24 C -0.13 -1.41 10.04 -39.59 -0.40 -1.80 16 25 C -0.12 -1.42 10.04 -39.60 -0.40 -1.81 16 26 C -0.11 -1.69 9.96 -39.43 -0.39 -2.09 16 27 C 0.07 1.09 6.49 -39.14 -0.25 0.84 16 28 O -0.28 -4.97 9.40 -43.72 -0.41 -5.38 16 29 N -0.47 -13.31 5.74 -10.25 -0.06 -13.37 16 30 H 0.27 7.20 8.29 -40.82 -0.34 6.86 16 31 H 0.10 2.26 8.06 -52.48 -0.42 1.84 16 32 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 33 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 34 H 0.40 5.63 8.70 -40.82 -0.36 5.28 16 35 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.13 1.33 8.06 -52.48 -0.42 0.91 16 40 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 41 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 42 H 0.14 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 357.56 15.07 5.39 5.39 Total: -1.00 -35.18 357.56 -10.52 -45.70 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -4.96 Total: 9.21 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -5.46 Total: -11.31 kcal Atomic # 7 Polarization: -44.22 SS G_CDS: 0.38 Total: -43.84 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -0.83 Total: -19.69 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.54 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.18 -10.52 -45.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361493443.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.956 kcal (2) G-P(sol) polarization free energy of solvation -35.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds