Wall clock time and date at job start Sat Apr 11 2020 05:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38500 * 120.82339 * 2 1 4 4 C 1.39297 * 119.18873 * 180.25617 * 3 2 1 5 5 C 1.48241 * 119.57650 * 179.70900 * 4 3 2 6 6 O 1.21410 * 119.99892 * 359.72602 * 5 4 3 7 7 O 1.34658 * 120.00184 * 179.72979 * 5 4 3 8 8 C 1.45201 * 116.99975 * 179.97438 * 7 5 4 9 9 C 1.50704 * 109.46781 * 180.02562 * 8 7 5 10 10 C 1.38628 * 119.74723 * 269.72544 * 9 8 7 11 11 C 1.37623 * 120.24407 * 179.72403 * 10 9 8 12 12 C 1.40709 * 119.74651 * 0.57300 * 11 10 9 13 13 C 1.41396 * 120.24732 * 179.68183 * 12 11 10 14 14 H 1.07994 * 120.00219 * 163.66640 * 13 12 11 15 15 C 1.39946 * 119.99764 * 343.66802 * 13 12 11 16 16 N 1.30827 * 119.99980 * 331.73246 * 15 13 12 17 17 Si 1.86802 * 120.00088 * 151.74091 * 15 13 12 18 18 H 1.48494 * 109.47262 * 94.99120 * 17 15 13 19 19 H 1.48497 * 109.46897 * 214.99286 * 17 15 13 20 20 H 1.48500 * 109.46886 * 334.98896 * 17 15 13 21 21 C 1.40714 * 119.51222 * 359.70346 * 12 11 10 22 22 C 1.37617 * 119.74592 * 0.02562 * 21 12 11 23 23 N 1.32778 * 120.84742 * 359.43712 * 4 3 2 24 24 C 1.31371 * 121.79791 * 0.26795 * 23 4 3 25 25 C 1.39773 * 120.72648 * 0.02700 * 24 23 4 26 26 C 1.48022 * 120.46086 * 179.97438 * 25 24 23 27 27 N 1.34778 * 119.99962 * 354.44097 * 26 25 24 28 28 O 1.21525 * 119.99982 * 174.43513 * 26 25 24 29 29 H 1.08994 * 109.47753 * 262.92914 * 1 2 3 30 30 H 1.09002 * 109.47176 * 22.92883 * 1 2 3 31 31 H 1.09003 * 109.47209 * 142.92408 * 1 2 3 32 32 H 1.08005 * 120.40462 * 359.96282 * 3 2 1 33 33 H 1.09000 * 109.46782 * 60.00292 * 8 7 5 34 34 H 1.08997 * 109.47489 * 300.00065 * 8 7 5 35 35 H 1.07998 * 119.87957 * 359.97438 * 10 9 8 36 36 H 1.08006 * 120.12520 * 180.28358 * 11 10 9 37 37 H 0.97000 * 120.00202 * 180.02562 * 16 15 13 38 38 H 1.07999 * 120.13055 * 179.97438 * 21 12 11 39 39 H 1.07993 * 119.88051 * 179.97438 * 22 21 12 40 40 H 1.08001 * 119.63123 * 179.97438 * 24 23 4 41 41 H 0.97000 * 119.99720 * 359.97438 * 27 26 25 42 42 H 0.96994 * 120.00013 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2167 1.1894 0.0000 4 6 3.6091 1.1496 -0.0054 5 6 4.3772 2.4175 -0.0120 6 8 3.7925 3.4815 -0.0177 7 8 5.7235 2.3891 -0.0118 8 6 6.4098 3.6686 -0.0191 9 6 7.8994 3.4396 -0.0183 10 6 8.5805 3.3474 1.1855 11 6 9.9398 3.1328 1.1982 12 6 10.6400 3.0189 -0.0170 13 6 12.0377 2.8051 -0.0164 14 1 12.5314 2.4585 -0.9122 15 6 12.7813 3.0424 1.1452 16 7 12.3739 3.9336 2.0120 17 14 14.3558 2.0871 1.4577 18 1 15.5179 2.8772 0.9776 19 1 14.4987 1.8311 2.9135 20 1 14.3024 0.7934 0.7306 21 6 9.9391 3.1200 -1.2330 22 6 8.5789 3.3292 -1.2217 23 7 4.2571 -0.0092 0.0006 24 6 3.6205 -1.1583 0.0067 25 6 2.2234 -1.2008 0.0064 26 6 1.5120 -2.4988 0.0127 27 7 2.2070 -3.6486 -0.0944 28 8 0.3014 -2.5278 0.1144 29 1 -0.3634 -0.1265 1.0197 30 1 -0.3633 0.9465 -0.4004 31 1 -0.3634 -0.8199 -0.6196 32 1 1.6968 2.1361 -0.0006 33 1 6.1287 4.2367 0.8678 34 1 6.1288 4.2267 -0.9122 35 1 8.0419 3.4403 2.1170 36 1 10.4679 3.0566 2.1373 37 1 12.8895 4.0984 2.8169 38 1 10.4666 3.0345 -2.1715 39 1 8.0389 3.4075 -2.1536 40 1 4.1829 -2.0804 0.0111 41 1 3.1733 -3.6255 -0.1759 42 1 1.7409 -4.4992 -0.0907 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361570860.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:15 Heat of formation + Delta-G solvation = -70.328426 kcal Electronic energy + Delta-G solvation = -27163.471340 eV Core-core repulsion = 23073.102143 eV Total energy + Delta-G solvation = -4090.369197 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.32152 -40.07728 -39.00343 -37.64457 -36.15240 -34.73654 -34.09525 -33.89988 -31.87174 -30.78692 -29.33924 -28.34136 -27.46714 -25.81192 -23.85993 -23.23096 -21.99811 -21.08129 -20.66827 -20.04566 -18.39747 -18.19740 -17.43300 -17.34395 -16.89909 -16.19832 -16.08707 -15.55745 -15.45615 -15.37056 -14.79513 -14.32367 -14.20533 -13.87991 -13.66925 -13.36704 -13.15347 -13.07441 -12.77889 -12.60556 -12.43976 -12.37500 -12.02907 -11.59343 -11.22721 -11.14284 -10.80712 -10.68482 -10.59941 -10.51768 -10.25296 -10.17249 -9.94884 -9.81739 -9.70567 -9.68641 -9.50408 -9.08792 -7.60092 -7.48997 -6.99534 -4.44321 -0.18278 0.75875 1.99283 2.34623 2.66886 2.82844 2.92911 2.99525 3.03776 3.05402 3.23424 3.48007 3.79704 3.81437 4.15264 4.25966 4.35855 4.50200 4.55315 4.84351 5.07328 5.23700 5.34182 5.38189 5.61006 5.62646 5.66896 5.71817 5.88460 6.02714 6.10344 6.27334 6.27628 6.32738 6.66024 6.76308 6.88049 6.92809 7.20413 7.27464 7.29468 7.50804 7.70188 7.76351 7.92985 7.95163 8.04280 8.17580 8.51947 8.76534 8.87846 9.94212 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016836 B = 0.002070 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.656783 B =13526.384227 C =14664.986631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.014 3.986 3 C -0.121 4.121 4 C 0.129 3.871 5 C 0.511 3.489 6 O -0.504 6.504 7 O -0.322 6.322 8 C 0.134 3.866 9 C -0.245 4.245 10 C -0.068 4.068 11 C -0.186 4.186 12 C 0.119 3.881 13 C -0.454 4.454 14 H 0.082 0.918 15 C 0.081 3.919 16 N -0.768 5.768 17 Si 0.904 3.096 18 H -0.269 1.269 19 H -0.273 1.273 20 H -0.257 1.257 21 C -0.238 4.238 22 C -0.056 4.056 23 N -0.435 5.435 24 C 0.138 3.862 25 C -0.181 4.181 26 C 0.571 3.429 27 N -0.847 5.847 28 O -0.529 6.529 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.159 0.841 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.088 0.912 36 H 0.118 0.882 37 H 0.285 0.715 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.168 0.832 41 H 0.403 0.597 42 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.041 -11.240 -1.745 20.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.005 3.995 3 C -0.141 4.141 4 C -0.006 4.006 5 C 0.354 3.646 6 O -0.393 6.393 7 O -0.236 6.236 8 C 0.062 3.938 9 C -0.246 4.246 10 C -0.087 4.087 11 C -0.205 4.205 12 C 0.116 3.884 13 C -0.481 4.481 14 H 0.100 0.900 15 C -0.141 4.141 16 N -0.390 5.390 17 Si 0.727 3.273 18 H -0.194 1.194 19 H -0.198 1.198 20 H -0.181 1.181 21 C -0.257 4.257 22 C -0.075 4.075 23 N -0.146 5.146 24 C -0.024 4.024 25 C -0.186 4.186 26 C 0.356 3.644 27 N -0.412 5.412 28 O -0.407 6.407 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.118 0.882 32 H 0.176 0.824 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.136 0.864 37 H 0.096 0.904 38 H 0.112 0.888 39 H 0.106 0.894 40 H 0.185 0.815 41 H 0.233 0.767 42 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -16.943 -10.513 -1.451 19.992 hybrid contribution 0.317 -0.588 0.222 0.704 sum -16.626 -11.101 -1.230 20.029 Atomic orbital electron populations 1.21106 0.88251 1.03968 1.04405 1.20466 0.97890 0.90643 0.90452 1.22080 0.93160 0.99918 0.98953 1.20538 0.90496 0.91255 0.98332 1.20794 0.82924 0.87425 0.73506 1.90820 1.71514 1.30917 1.46082 1.86904 1.17091 1.38472 1.81172 1.21850 0.90105 0.80778 1.01059 1.18555 0.90255 1.21651 0.94147 1.20494 0.94714 0.98416 0.95032 1.21253 0.92510 1.08130 0.98600 1.17647 0.93098 0.86606 0.91078 1.19684 0.92477 1.38451 0.97520 0.89961 1.26035 0.99834 0.92985 0.95202 1.69893 1.37702 1.22300 1.09149 0.86368 0.80864 0.81376 0.78666 1.19369 1.19781 1.18061 1.20847 0.93730 1.14221 0.96919 1.20360 0.94348 0.97627 0.95132 1.67769 1.39974 0.97385 1.09482 1.23044 0.89961 0.96553 0.92844 1.21039 0.95352 0.94377 1.07873 1.17990 0.86732 0.83911 0.75755 1.43749 1.11905 1.08495 1.77021 1.90792 1.13494 1.87190 1.49191 0.89604 0.91217 0.88228 0.82362 0.91798 0.91870 0.89423 0.86412 0.90432 0.88813 0.89380 0.81535 0.76671 0.76004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.00 8.80 36.01 0.32 -0.68 16 2 C 0.01 0.14 5.95 -103.93 -0.62 -0.48 16 3 C -0.12 -1.35 9.30 -39.09 -0.36 -1.71 16 4 C 0.13 1.81 6.75 -82.95 -0.56 1.25 16 5 C 0.51 8.58 7.95 34.84 0.28 8.86 16 6 O -0.50 -8.89 16.10 -19.20 -0.31 -9.20 16 7 O -0.32 -6.14 10.02 -40.38 -0.40 -6.54 16 8 C 0.13 2.58 5.59 36.01 0.20 2.78 16 9 C -0.24 -5.47 5.54 -104.33 -0.58 -6.05 16 10 C -0.07 -1.60 9.67 -39.66 -0.38 -1.98 16 11 C -0.19 -4.77 8.80 -38.87 -0.34 -5.12 16 12 C 0.12 3.11 5.63 -106.83 -0.60 2.51 16 13 C -0.45 -11.68 9.01 -37.74 -0.34 -12.02 16 14 H 0.08 2.03 7.98 -52.49 -0.42 1.61 16 15 C 0.08 1.96 4.97 -17.34 -0.09 1.87 16 16 N -0.77 -19.01 11.11 55.55 0.62 -18.40 16 17 Si 0.90 17.74 29.64 -169.99 -5.04 12.70 16 18 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 19 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 20 H -0.26 -5.05 7.11 56.52 0.40 -4.64 16 21 C -0.24 -5.79 9.80 -38.87 -0.38 -6.17 16 22 C -0.06 -1.27 9.67 -39.66 -0.38 -1.65 16 23 N -0.44 -5.89 10.10 -9.49 -0.10 -5.99 16 24 C 0.14 1.31 10.69 -17.17 -0.18 1.13 16 25 C -0.18 -1.68 5.90 -104.72 -0.62 -2.29 16 26 C 0.57 4.81 8.00 -12.25 -0.10 4.71 16 27 N -0.85 -3.80 8.83 30.57 0.27 -3.53 16 28 O -0.53 -5.91 14.33 5.34 0.08 -5.83 16 29 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.46 8.06 -51.93 -0.42 0.04 16 31 H 0.10 0.91 6.00 -51.93 -0.31 0.60 16 32 H 0.16 1.57 7.63 -52.48 -0.40 1.17 16 33 H 0.06 1.17 8.07 -51.93 -0.42 0.75 16 34 H 0.06 1.14 8.07 -51.93 -0.42 0.72 16 35 H 0.09 1.88 8.06 -52.49 -0.42 1.45 16 36 H 0.12 3.09 5.98 -52.48 -0.31 2.77 16 37 H 0.28 6.32 8.30 -40.82 -0.34 5.98 16 38 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 39 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 40 H 0.17 0.92 6.45 -52.49 -0.34 0.59 16 41 H 0.40 0.89 6.92 -40.82 -0.28 0.60 16 42 H 0.41 1.27 8.93 -40.82 -0.36 0.91 16 LS Contribution 368.19 15.07 5.55 5.55 Total: -1.00 -31.42 368.19 -8.59 -40.01 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -4.51 Total: 6.27 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: -4.74 Total: -15.05 kcal Atomic # 7 Polarization: -28.71 SS G_CDS: 0.79 Total: -27.92 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.64 Total: -21.57 kcal Atomic # 14 Polarization: 17.74 SS G_CDS: -5.04 Total: 12.70 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.42 -8.59 -40.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361570860.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.315 kcal (2) G-P(sol) polarization free energy of solvation -31.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds