Wall clock time and date at job start Sat Apr 11 2020 05:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38500 * 120.82339 * 2 1 4 4 C 1.39297 * 119.18873 * 180.25617 * 3 2 1 5 5 C 1.48241 * 119.57650 * 179.70900 * 4 3 2 6 6 O 1.21410 * 119.99892 * 359.72602 * 5 4 3 7 7 O 1.34658 * 120.00184 * 179.72979 * 5 4 3 8 8 C 1.45201 * 116.99975 * 179.97438 * 7 5 4 9 9 C 1.50704 * 109.46781 * 180.02562 * 8 7 5 10 10 C 1.38628 * 119.74723 * 269.72544 * 9 8 7 11 11 C 1.37623 * 120.24407 * 179.72403 * 10 9 8 12 12 C 1.40709 * 119.74651 * 0.57300 * 11 10 9 13 13 C 1.41396 * 120.24732 * 179.68183 * 12 11 10 14 14 H 1.07994 * 120.00219 * 163.66640 * 13 12 11 15 15 C 1.39946 * 119.99764 * 343.66802 * 13 12 11 16 16 N 1.30827 * 119.99980 * 331.73246 * 15 13 12 17 17 Si 1.86802 * 120.00088 * 151.74091 * 15 13 12 18 18 H 1.48494 * 109.47262 * 94.99120 * 17 15 13 19 19 H 1.48497 * 109.46897 * 214.99286 * 17 15 13 20 20 H 1.48500 * 109.46886 * 334.98896 * 17 15 13 21 21 C 1.40714 * 119.51222 * 359.70346 * 12 11 10 22 22 C 1.37617 * 119.74592 * 0.02562 * 21 12 11 23 23 N 1.32778 * 120.84742 * 359.43712 * 4 3 2 24 24 C 1.31371 * 121.79791 * 0.26795 * 23 4 3 25 25 C 1.39773 * 120.72648 * 0.02700 * 24 23 4 26 26 C 1.48022 * 120.46086 * 179.97438 * 25 24 23 27 27 N 1.34778 * 119.99962 * 354.44097 * 26 25 24 28 28 O 1.21525 * 119.99982 * 174.43513 * 26 25 24 29 29 H 1.08994 * 109.47753 * 262.92914 * 1 2 3 30 30 H 1.09002 * 109.47176 * 22.92883 * 1 2 3 31 31 H 1.09003 * 109.47209 * 142.92408 * 1 2 3 32 32 H 1.08005 * 120.40462 * 359.96282 * 3 2 1 33 33 H 1.09000 * 109.46782 * 60.00292 * 8 7 5 34 34 H 1.08997 * 109.47489 * 300.00065 * 8 7 5 35 35 H 1.07998 * 119.87957 * 359.97438 * 10 9 8 36 36 H 1.08006 * 120.12520 * 180.28358 * 11 10 9 37 37 H 0.97000 * 120.00202 * 180.02562 * 16 15 13 38 38 H 1.07999 * 120.13055 * 179.97438 * 21 12 11 39 39 H 1.07993 * 119.88051 * 179.97438 * 22 21 12 40 40 H 1.08001 * 119.63123 * 179.97438 * 24 23 4 41 41 H 0.97000 * 119.99720 * 359.97438 * 27 26 25 42 42 H 0.96994 * 120.00013 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2167 1.1894 0.0000 4 6 3.6091 1.1496 -0.0054 5 6 4.3772 2.4175 -0.0120 6 8 3.7925 3.4815 -0.0177 7 8 5.7235 2.3891 -0.0118 8 6 6.4098 3.6686 -0.0191 9 6 7.8994 3.4396 -0.0183 10 6 8.5805 3.3474 1.1855 11 6 9.9398 3.1328 1.1982 12 6 10.6400 3.0189 -0.0170 13 6 12.0377 2.8051 -0.0164 14 1 12.5314 2.4585 -0.9122 15 6 12.7813 3.0424 1.1452 16 7 12.3739 3.9336 2.0120 17 14 14.3558 2.0871 1.4577 18 1 15.5179 2.8772 0.9776 19 1 14.4987 1.8311 2.9135 20 1 14.3024 0.7934 0.7306 21 6 9.9391 3.1200 -1.2330 22 6 8.5789 3.3292 -1.2217 23 7 4.2571 -0.0092 0.0006 24 6 3.6205 -1.1583 0.0067 25 6 2.2234 -1.2008 0.0064 26 6 1.5120 -2.4988 0.0127 27 7 2.2070 -3.6486 -0.0944 28 8 0.3014 -2.5278 0.1144 29 1 -0.3634 -0.1265 1.0197 30 1 -0.3633 0.9465 -0.4004 31 1 -0.3634 -0.8199 -0.6196 32 1 1.6968 2.1361 -0.0006 33 1 6.1287 4.2367 0.8678 34 1 6.1288 4.2267 -0.9122 35 1 8.0419 3.4403 2.1170 36 1 10.4679 3.0566 2.1373 37 1 12.8895 4.0984 2.8169 38 1 10.4666 3.0345 -2.1715 39 1 8.0389 3.4075 -2.1536 40 1 4.1829 -2.0804 0.0111 41 1 3.1733 -3.6255 -0.1759 42 1 1.7409 -4.4992 -0.0907 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361570860.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:14 Heat of formation + Delta-G solvation = -89.717775 kcal Electronic energy + Delta-G solvation = -27164.312125 eV Core-core repulsion = 23073.102143 eV Total energy + Delta-G solvation = -4091.209983 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.22750 -41.24061 -39.88645 -39.40148 -37.60127 -35.76241 -35.39548 -34.79735 -32.85015 -32.42947 -31.20811 -29.14924 -29.04810 -26.94512 -25.40019 -24.16996 -22.96992 -22.84803 -21.87243 -21.62878 -19.30915 -19.23793 -19.00263 -18.35940 -17.94647 -17.56688 -17.17357 -16.93672 -16.33447 -16.27925 -16.07844 -15.69019 -15.57022 -15.24168 -14.86518 -14.53252 -14.23630 -14.04769 -13.94299 -13.86806 -13.77595 -13.72869 -13.28616 -13.24446 -13.05185 -12.81169 -12.42408 -12.26579 -11.98684 -11.70591 -11.51519 -11.32248 -11.31295 -10.92028 -10.90187 -10.69057 -10.60761 -10.51904 -9.48336 -9.37751 -8.79896 -6.36303 -1.07891 -0.03872 0.71252 0.97140 1.13174 1.35506 1.40667 1.54008 1.72776 1.80290 2.17566 2.34312 2.59733 2.60920 2.94474 3.43624 3.49214 3.54030 3.74405 3.83386 3.84415 4.07223 4.10807 4.34939 4.44896 4.48564 4.49361 4.54690 4.58740 4.74658 4.95302 5.00593 5.09737 5.16082 5.27446 5.31907 5.34617 5.40975 5.63684 5.83914 5.90097 6.04937 6.16796 6.28944 6.30452 6.34113 6.62775 6.68444 6.86517 6.98177 7.18717 8.17497 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016836 B = 0.002070 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.656783 B =13526.384227 C =14664.986631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.011 3.989 3 C -0.112 4.112 4 C 0.104 3.896 5 C 0.512 3.488 6 O -0.518 6.518 7 O -0.338 6.338 8 C 0.139 3.861 9 C -0.242 4.242 10 C -0.074 4.074 11 C -0.210 4.210 12 C 0.088 3.912 13 C -0.490 4.490 14 H 0.082 0.918 15 C 0.042 3.958 16 N -0.799 5.799 17 Si 0.980 3.020 18 H -0.259 1.259 19 H -0.263 1.263 20 H -0.257 1.257 21 C -0.254 4.254 22 C -0.059 4.059 23 N -0.468 5.468 24 C 0.143 3.857 25 C -0.172 4.172 26 C 0.571 3.429 27 N -0.825 5.825 28 O -0.558 6.558 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.168 0.832 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.294 0.706 38 H 0.102 0.898 39 H 0.116 0.884 40 H 0.205 0.795 41 H 0.417 0.583 42 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.001 -12.974 -1.885 22.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.003 3.997 3 C -0.132 4.132 4 C -0.031 4.031 5 C 0.356 3.644 6 O -0.408 6.408 7 O -0.253 6.253 8 C 0.067 3.933 9 C -0.243 4.243 10 C -0.092 4.092 11 C -0.230 4.230 12 C 0.086 3.914 13 C -0.517 4.517 14 H 0.100 0.900 15 C -0.177 4.177 16 N -0.422 5.422 17 Si 0.800 3.200 18 H -0.183 1.183 19 H -0.188 1.188 20 H -0.181 1.181 21 C -0.274 4.274 22 C -0.077 4.077 23 N -0.179 5.179 24 C -0.019 4.019 25 C -0.178 4.178 26 C 0.355 3.645 27 N -0.390 5.390 28 O -0.438 6.438 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.111 0.889 32 H 0.185 0.815 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.105 0.895 38 H 0.120 0.880 39 H 0.134 0.866 40 H 0.222 0.778 41 H 0.249 0.751 42 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -17.896 -12.263 -1.601 21.754 hybrid contribution 0.419 -0.118 0.239 0.497 sum -17.477 -12.381 -1.363 21.462 Atomic orbital electron populations 1.21105 0.86974 1.04645 1.04535 1.20713 0.98762 0.90429 0.89812 1.22136 0.92007 1.00908 0.98140 1.20266 0.91007 0.90393 1.01403 1.21250 0.81972 0.88586 0.72618 1.90798 1.71382 1.31773 1.46840 1.86847 1.18707 1.37831 1.81893 1.21684 0.88282 0.81236 1.02123 1.18872 0.92135 1.19705 0.93576 1.20732 0.94185 0.97867 0.96444 1.21245 0.93484 1.10156 0.98088 1.18007 0.93960 0.87520 0.91936 1.19932 0.92854 1.40243 0.98710 0.90018 1.26898 1.03197 0.93271 0.94350 1.69912 1.39373 1.23187 1.09773 0.85233 0.76462 0.79536 0.78809 1.18301 1.18766 1.18108 1.21063 0.94721 1.14819 0.96773 1.20675 0.93901 0.96583 0.96510 1.67691 1.41166 0.98219 1.10836 1.23590 0.90340 0.96585 0.91372 1.21246 0.95390 0.94903 1.06218 1.17874 0.86348 0.84341 0.75896 1.43593 1.12636 1.07837 1.74941 1.90793 1.14647 1.87526 1.50861 0.89290 0.89546 0.88879 0.81471 0.91089 0.90549 0.87818 0.87751 0.89465 0.88006 0.86634 0.77833 0.75083 0.74792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.70 8.80 71.24 0.63 -1.08 16 2 C 0.01 0.20 5.95 -19.42 -0.12 0.09 16 3 C -0.11 -2.35 9.30 22.59 0.21 -2.14 16 4 C 0.10 2.82 6.75 41.92 0.28 3.10 16 5 C 0.51 16.95 7.95 70.48 0.56 17.52 16 6 O -0.52 -17.96 16.10 20.13 0.32 -17.64 16 7 O -0.34 -12.72 10.02 -55.67 -0.56 -13.28 16 8 C 0.14 5.24 5.59 71.24 0.40 5.63 16 9 C -0.24 -10.74 5.54 -19.67 -0.11 -10.85 16 10 C -0.07 -3.53 9.67 22.22 0.21 -3.31 16 11 C -0.21 -11.18 8.80 22.73 0.20 -10.98 16 12 C 0.09 4.79 5.63 -21.29 -0.12 4.67 16 13 C -0.49 -26.00 9.01 23.46 0.21 -25.79 16 14 H 0.08 4.16 7.98 -2.91 -0.02 4.14 16 15 C 0.04 2.05 4.97 85.26 0.42 2.48 16 16 N -0.80 -40.49 11.11 21.83 0.24 -40.24 16 17 Si 0.98 36.52 29.64 68.60 2.03 38.56 16 18 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 19 H -0.26 -9.31 7.11 99.48 0.71 -8.61 16 20 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 21 C -0.25 -12.61 9.80 22.73 0.22 -12.39 16 22 C -0.06 -2.63 9.67 22.22 0.21 -2.41 16 23 N -0.47 -12.12 10.10 -183.95 -1.86 -13.98 16 24 C 0.14 2.40 10.69 85.13 0.91 3.31 16 25 C -0.17 -2.81 5.90 -19.93 -0.12 -2.93 16 26 C 0.57 8.23 8.00 86.84 0.70 8.92 16 27 N -0.82 -4.88 8.83 -175.49 -1.55 -6.43 16 28 O -0.56 -11.43 14.33 -3.79 -0.05 -11.48 16 29 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.09 0.95 8.06 -2.39 -0.02 0.93 16 31 H 0.09 1.55 6.00 -2.39 -0.01 1.54 16 32 H 0.17 3.11 7.63 -2.91 -0.02 3.09 16 33 H 0.07 2.55 8.07 -2.39 -0.02 2.54 16 34 H 0.08 2.66 8.07 -2.39 -0.02 2.64 16 35 H 0.10 4.48 8.06 -2.91 -0.02 4.46 16 36 H 0.10 5.71 5.98 -2.91 -0.02 5.70 16 37 H 0.29 13.25 8.30 -92.71 -0.77 12.48 16 38 H 0.10 4.72 8.06 -2.91 -0.02 4.69 16 39 H 0.12 4.47 8.06 -2.91 -0.02 4.44 16 40 H 0.21 1.58 6.45 -2.91 -0.02 1.56 16 41 H 0.42 0.34 6.92 -92.71 -0.64 -0.30 16 42 H 0.42 1.35 8.93 -92.71 -0.83 0.52 16 Total: -1.00 -69.75 368.19 2.93 -66.82 By element: Atomic # 1 Polarization: 24.18 SS G_CDS: -0.36 Total: 23.82 kcal Atomic # 6 Polarization: -30.87 SS G_CDS: 4.71 Total: -26.16 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: -3.16 Total: -60.65 kcal Atomic # 8 Polarization: -42.11 SS G_CDS: -0.29 Total: -42.39 kcal Atomic # 14 Polarization: 36.52 SS G_CDS: 2.03 Total: 38.56 kcal Total: -69.75 2.93 -66.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361570860.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.897 kcal (2) G-P(sol) polarization free energy of solvation -69.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds