Wall clock time and date at job start Sat Apr 11 2020 05:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34706 * 116.99488 * 2 1 4 4 O 1.21469 * 120.00470 * 0.02562 * 3 2 1 5 5 C 1.47735 * 119.99883 * 180.02562 * 3 2 1 6 6 C 1.39969 * 120.53031 * 5.57263 * 5 3 2 7 7 C 1.39010 * 118.22231 * 180.26249 * 6 5 3 8 8 N 1.39868 * 120.42058 * 179.78960 * 7 6 5 9 9 C 1.34784 * 119.99908 * 326.38233 * 8 7 6 10 10 O 1.21603 * 119.99907 * 354.82097 * 9 8 7 11 11 C 1.47588 * 119.99815 * 174.81968 * 9 8 7 12 12 C 1.40035 * 119.89559 * 180.02562 * 11 9 8 13 13 C 1.36307 * 120.10392 * 180.29672 * 12 11 9 14 14 C 1.40900 * 119.89430 * 359.47787 * 13 12 11 15 15 C 1.41086 * 120.10094 * 180.25252 * 14 13 12 16 16 H 1.08003 * 119.99749 * 206.72510 * 15 14 13 17 17 C 1.40228 * 120.00590 * 26.72083 * 15 14 13 18 18 N 1.30643 * 119.99592 * 14.93019 * 17 15 14 19 19 Si 1.86794 * 120.00508 * 194.93339 * 17 15 14 20 20 H 1.48501 * 109.47252 * 89.99713 * 19 17 15 21 21 H 1.48501 * 109.47312 * 209.99894 * 19 17 15 22 22 H 1.48498 * 109.46959 * 329.99947 * 19 17 15 23 23 C 1.40898 * 119.79588 * 0.51882 * 14 13 12 24 24 C 1.36304 * 119.88963 * 359.73397 * 23 14 13 25 25 C 1.39021 * 119.15746 * 359.50846 * 7 6 5 26 26 N 1.31865 * 120.98666 * 0.25754 * 25 7 6 27 27 C 1.31683 * 121.96499 * 359.97438 * 26 25 7 28 28 C 1.50698 * 119.63401 * 179.97438 * 27 26 25 29 29 H 1.08997 * 109.47581 * 59.99580 * 1 2 3 30 30 H 1.09007 * 109.46461 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47055 * 299.99196 * 1 2 3 32 32 H 1.08005 * 120.88441 * 0.04376 * 6 5 3 33 33 H 0.96991 * 120.00336 * 146.38444 * 8 7 6 34 34 H 1.08003 * 119.94666 * 0.02562 * 12 11 9 35 35 H 1.07999 * 120.05035 * 179.71904 * 13 12 11 36 36 H 0.97004 * 119.99890 * 180.02562 * 18 17 15 37 37 H 1.07995 * 120.05378 * 179.70767 * 23 14 13 38 38 H 1.08005 * 119.94755 * 180.02562 * 24 23 14 39 39 H 1.07995 * 119.51228 * 180.27333 * 25 7 6 40 40 H 1.09007 * 109.47272 * 97.10665 * 28 27 26 41 41 H 1.09005 * 109.47224 * 217.10191 * 28 27 26 42 42 H 1.08998 * 109.47468 * 337.10372 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5389 1.2777 -0.0006 6 6 4.3117 0.1167 -0.1182 7 6 5.6959 0.2446 -0.1077 8 7 6.5124 -0.8857 -0.2179 9 6 6.1174 -2.0573 0.3189 10 8 5.0977 -2.1104 0.9792 11 6 6.9226 -3.2755 0.1051 12 6 6.5100 -4.4917 0.6633 13 6 7.2536 -5.6183 0.4736 14 6 8.4332 -5.5600 -0.2946 15 6 9.2034 -6.7244 -0.4982 16 1 10.2640 -6.6444 -0.6858 17 6 8.5919 -7.9857 -0.4568 18 7 7.2908 -8.0833 -0.5233 19 14 9.6375 -9.5263 -0.3067 20 1 9.8372 -9.8511 1.1285 21 1 8.9510 -10.6581 -0.9796 22 1 10.9559 -9.2943 -0.9497 23 6 8.8444 -4.3340 -0.8543 24 6 8.0971 -3.2117 -0.6549 25 6 6.2583 1.5107 0.0078 26 7 5.4991 2.5839 0.1118 27 6 4.1843 2.5104 0.1110 28 6 3.3676 3.7709 0.2335 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3632 -1.0278 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 3.8451 -0.8529 -0.2110 33 1 7.3628 -0.8264 -0.6804 34 1 5.6034 -4.5363 1.2487 35 1 6.9369 -6.5548 0.9083 36 1 6.8678 -8.9557 -0.4943 37 1 9.7504 -4.2836 -1.4399 38 1 8.4111 -2.2715 -1.0838 39 1 7.3330 1.6171 0.0120 40 1 3.0590 4.1018 -0.7583 41 1 2.4847 3.5742 0.8418 42 1 3.9680 4.5486 0.7054 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361696015.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:20 Heat of formation + Delta-G solvation = -64.333852 kcal Electronic energy + Delta-G solvation = -27767.773180 eV Core-core repulsion = 23677.663927 eV Total energy + Delta-G solvation = -4090.109253 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.18744 -40.12193 -39.03057 -37.35140 -36.64733 -34.93504 -34.03388 -32.75484 -31.79859 -30.22951 -29.66104 -28.20956 -27.23088 -25.83472 -24.83464 -22.92475 -22.10417 -21.43092 -20.77567 -19.85378 -18.53748 -17.67070 -17.30720 -17.15574 -16.56629 -16.36953 -16.07838 -15.73658 -15.42752 -14.70248 -14.31186 -14.16679 -14.09864 -13.80454 -13.37940 -13.33257 -13.25457 -12.87329 -12.72395 -12.49819 -12.37759 -12.24273 -12.08063 -11.98414 -11.58159 -11.35219 -11.07634 -10.94690 -10.82812 -10.62051 -10.57261 -10.17674 -9.88073 -9.81285 -9.64605 -9.49845 -9.14685 -8.21225 -7.84934 -7.68969 -7.12434 -4.74303 0.38157 1.08848 2.03358 2.37130 2.52293 2.82741 2.88532 2.91522 2.92546 3.26368 3.50160 3.66123 3.77334 4.19397 4.41721 4.46087 4.65505 4.76361 4.94690 5.00862 5.02651 5.17300 5.38210 5.42219 5.61501 5.62504 5.67747 5.73124 5.82961 5.98079 6.05367 6.12636 6.14608 6.37588 6.68457 6.69873 6.78798 6.90497 6.94809 7.29685 7.44777 7.51928 7.56791 7.73074 7.73698 7.87429 7.95415 8.29956 8.49576 8.60552 8.69260 9.78939 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020474 B = 0.002258 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.269657 B =12396.527725 C =13577.666648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.348 6.348 3 C 0.518 3.482 4 O -0.502 6.502 5 C -0.165 4.165 6 C -0.023 4.023 7 C 0.101 3.899 8 N -0.678 5.678 9 C 0.569 3.431 10 O -0.550 6.550 11 C -0.288 4.288 12 C -0.032 4.032 13 C -0.180 4.180 14 C 0.130 3.870 15 C -0.437 4.437 16 H 0.086 0.914 17 C 0.071 3.929 18 N -0.768 5.768 19 Si 0.917 3.083 20 H -0.264 1.264 21 H -0.274 1.274 22 H -0.259 1.259 23 C -0.232 4.232 24 C -0.048 4.048 25 C 0.105 3.895 26 N -0.469 5.469 27 C 0.164 3.836 28 C -0.106 4.106 29 H 0.063 0.937 30 H 0.103 0.897 31 H 0.064 0.936 32 H 0.162 0.838 33 H 0.412 0.588 34 H 0.102 0.898 35 H 0.122 0.878 36 H 0.289 0.711 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.165 0.835 40 H 0.081 0.919 41 H 0.096 0.904 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.379 12.054 -0.943 13.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.264 6.264 3 C 0.363 3.637 4 O -0.392 6.392 5 C -0.169 4.169 6 C -0.051 4.051 7 C 0.003 3.997 8 N -0.324 5.324 9 C 0.367 3.633 10 O -0.430 6.430 11 C -0.292 4.292 12 C -0.051 4.051 13 C -0.199 4.199 14 C 0.126 3.874 15 C -0.464 4.464 16 H 0.104 0.896 17 C -0.151 4.151 18 N -0.390 5.390 19 Si 0.740 3.260 20 H -0.188 1.188 21 H -0.199 1.199 22 H -0.182 1.182 23 C -0.251 4.251 24 C -0.067 4.067 25 C -0.055 4.055 26 N -0.178 5.178 27 C 0.024 3.976 28 C -0.163 4.163 29 H 0.082 0.918 30 H 0.122 0.878 31 H 0.082 0.918 32 H 0.180 0.820 33 H 0.250 0.750 34 H 0.120 0.880 35 H 0.140 0.860 36 H 0.100 0.900 37 H 0.118 0.882 38 H 0.108 0.892 39 H 0.182 0.818 40 H 0.099 0.901 41 H 0.115 0.885 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.104 12.830 -0.434 14.215 hybrid contribution 0.341 -1.642 -0.367 1.717 sum -5.762 11.188 -0.800 12.610 Atomic orbital electron populations 1.23309 0.75801 1.04017 1.02485 1.86630 1.23644 1.32223 1.83884 1.20887 0.88600 0.81565 0.72625 1.90774 1.66802 1.35429 1.46157 1.19814 0.90375 0.94993 1.11706 1.22026 0.92229 0.99436 0.91421 1.18747 0.91123 0.88684 1.01171 1.43609 1.22901 1.07974 1.57915 1.18848 0.84909 0.82554 0.76984 1.90686 1.26529 1.85455 1.40344 1.18715 1.01370 0.92292 1.16845 1.20473 0.97379 0.91457 0.95831 1.21039 0.98287 0.97454 1.03145 1.17827 0.91127 0.91972 0.86466 1.19904 0.96700 0.90178 1.39630 0.89554 1.26141 0.95273 1.01756 0.91897 1.69726 1.10624 1.27793 1.30882 0.86151 0.80671 0.79362 0.79791 1.18841 1.19902 1.18240 1.20698 1.02737 0.93793 1.07864 1.20356 0.93705 0.96672 0.95944 1.22897 1.00575 0.86549 0.95463 1.67634 1.05106 1.31291 1.13793 1.21357 0.89856 0.93843 0.92503 1.20993 0.99000 0.92521 1.03755 0.91791 0.87819 0.91751 0.82007 0.75025 0.87994 0.85984 0.89985 0.88241 0.89174 0.81756 0.90076 0.88528 0.91002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.56 101.05 1.07 1.42 16 2 O -0.35 -4.70 9.91 -40.51 -0.40 -5.10 16 3 C 0.52 7.30 7.84 34.61 0.27 7.57 16 4 O -0.50 -7.13 13.14 -19.24 -0.25 -7.38 16 5 C -0.16 -2.39 5.89 -104.86 -0.62 -3.00 16 6 C -0.02 -0.36 8.32 -38.65 -0.32 -0.68 16 7 C 0.10 1.47 6.29 -83.61 -0.53 0.95 16 8 N -0.68 -10.22 5.29 -10.72 -0.06 -10.27 16 9 C 0.57 11.03 7.52 -12.44 -0.09 10.94 16 10 O -0.55 -12.03 14.06 5.27 0.07 -11.95 16 11 C -0.29 -6.03 5.89 -104.74 -0.62 -6.65 16 12 C -0.03 -0.73 9.52 -39.60 -0.38 -1.11 16 13 C -0.18 -4.34 8.61 -39.27 -0.34 -4.68 16 14 C 0.13 3.11 5.56 -106.80 -0.59 2.51 16 15 C -0.44 -10.29 9.05 -37.76 -0.34 -10.63 16 16 H 0.09 1.92 7.89 -52.48 -0.41 1.50 16 17 C 0.07 1.60 5.18 -17.31 -0.09 1.51 16 18 N -0.77 -17.94 10.92 55.56 0.61 -17.33 16 19 Si 0.92 16.62 29.59 -169.99 -5.03 11.60 16 20 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 21 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 22 H -0.26 -4.62 7.11 56.52 0.40 -4.22 16 23 C -0.23 -4.97 9.73 -39.27 -0.38 -5.35 16 24 C -0.05 -0.92 9.47 -39.60 -0.37 -1.30 16 25 C 0.11 1.32 11.11 -17.25 -0.19 1.13 16 26 N -0.47 -6.34 10.25 -8.98 -0.09 -6.43 16 27 C 0.16 2.23 6.82 -82.15 -0.56 1.67 16 28 C -0.11 -1.20 8.86 36.00 0.32 -0.88 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.10 0.74 8.14 -51.92 -0.42 0.32 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.16 2.80 6.19 -52.48 -0.32 2.47 16 33 H 0.41 5.02 6.84 -40.82 -0.28 4.74 16 34 H 0.10 2.30 7.63 -52.48 -0.40 1.90 16 35 H 0.12 3.03 6.20 -52.49 -0.33 2.70 16 36 H 0.29 6.08 8.29 -40.82 -0.34 5.74 16 37 H 0.10 1.95 8.06 -52.49 -0.42 1.53 16 38 H 0.09 1.37 6.39 -52.48 -0.34 1.03 16 39 H 0.17 1.54 8.06 -52.49 -0.42 1.11 16 40 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.10 1.15 5.85 -51.93 -0.30 0.84 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 362.80 15.07 5.47 5.47 Total: -1.00 -28.25 362.80 -7.93 -36.18 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -4.48 Total: 11.82 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -3.77 Total: -6.60 kcal Atomic # 7 Polarization: -34.49 SS G_CDS: 0.46 Total: -34.03 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -0.58 Total: -24.43 kcal Atomic # 14 Polarization: 16.62 SS G_CDS: -5.03 Total: 11.60 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -28.25 -7.93 -36.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361696015.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.154 kcal (2) G-P(sol) polarization free energy of solvation -28.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds