Wall clock time and date at job start Sat Apr 11 2020 05:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34706 * 116.99488 * 2 1 4 4 O 1.21469 * 120.00470 * 0.02562 * 3 2 1 5 5 C 1.47735 * 119.99883 * 180.02562 * 3 2 1 6 6 C 1.39969 * 120.53031 * 5.57263 * 5 3 2 7 7 C 1.39010 * 118.22231 * 180.26249 * 6 5 3 8 8 N 1.39868 * 120.42058 * 179.78960 * 7 6 5 9 9 C 1.34784 * 119.99908 * 326.38233 * 8 7 6 10 10 O 1.21603 * 119.99907 * 354.82097 * 9 8 7 11 11 C 1.47588 * 119.99815 * 174.81968 * 9 8 7 12 12 C 1.40035 * 119.89559 * 180.02562 * 11 9 8 13 13 C 1.36307 * 120.10392 * 180.29672 * 12 11 9 14 14 C 1.40900 * 119.89430 * 359.47787 * 13 12 11 15 15 C 1.41086 * 120.10094 * 180.25252 * 14 13 12 16 16 H 1.08003 * 119.99749 * 206.72510 * 15 14 13 17 17 C 1.40228 * 120.00590 * 26.72083 * 15 14 13 18 18 N 1.30643 * 119.99592 * 14.93019 * 17 15 14 19 19 Si 1.86794 * 120.00508 * 194.93339 * 17 15 14 20 20 H 1.48501 * 109.47252 * 89.99713 * 19 17 15 21 21 H 1.48501 * 109.47312 * 209.99894 * 19 17 15 22 22 H 1.48498 * 109.46959 * 329.99947 * 19 17 15 23 23 C 1.40898 * 119.79588 * 0.51882 * 14 13 12 24 24 C 1.36304 * 119.88963 * 359.73397 * 23 14 13 25 25 C 1.39021 * 119.15746 * 359.50846 * 7 6 5 26 26 N 1.31865 * 120.98666 * 0.25754 * 25 7 6 27 27 C 1.31683 * 121.96499 * 359.97438 * 26 25 7 28 28 C 1.50698 * 119.63401 * 179.97438 * 27 26 25 29 29 H 1.08997 * 109.47581 * 59.99580 * 1 2 3 30 30 H 1.09007 * 109.46461 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47055 * 299.99196 * 1 2 3 32 32 H 1.08005 * 120.88441 * 0.04376 * 6 5 3 33 33 H 0.96991 * 120.00336 * 146.38444 * 8 7 6 34 34 H 1.08003 * 119.94666 * 0.02562 * 12 11 9 35 35 H 1.07999 * 120.05035 * 179.71904 * 13 12 11 36 36 H 0.97004 * 119.99890 * 180.02562 * 18 17 15 37 37 H 1.07995 * 120.05378 * 179.70767 * 23 14 13 38 38 H 1.08005 * 119.94755 * 180.02562 * 24 23 14 39 39 H 1.07995 * 119.51228 * 180.27333 * 25 7 6 40 40 H 1.09007 * 109.47272 * 97.10665 * 28 27 26 41 41 H 1.09005 * 109.47224 * 217.10191 * 28 27 26 42 42 H 1.08998 * 109.47468 * 337.10372 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5389 1.2777 -0.0006 6 6 4.3117 0.1167 -0.1182 7 6 5.6959 0.2446 -0.1077 8 7 6.5124 -0.8857 -0.2179 9 6 6.1174 -2.0573 0.3189 10 8 5.0977 -2.1104 0.9792 11 6 6.9226 -3.2755 0.1051 12 6 6.5100 -4.4917 0.6633 13 6 7.2536 -5.6183 0.4736 14 6 8.4332 -5.5600 -0.2946 15 6 9.2034 -6.7244 -0.4982 16 1 10.2640 -6.6444 -0.6858 17 6 8.5919 -7.9857 -0.4568 18 7 7.2908 -8.0833 -0.5233 19 14 9.6375 -9.5263 -0.3067 20 1 9.8372 -9.8511 1.1285 21 1 8.9510 -10.6581 -0.9796 22 1 10.9559 -9.2943 -0.9497 23 6 8.8444 -4.3340 -0.8543 24 6 8.0971 -3.2117 -0.6549 25 6 6.2583 1.5107 0.0078 26 7 5.4991 2.5839 0.1118 27 6 4.1843 2.5104 0.1110 28 6 3.3676 3.7709 0.2335 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3632 -1.0278 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 3.8451 -0.8529 -0.2110 33 1 7.3628 -0.8264 -0.6804 34 1 5.6034 -4.5363 1.2487 35 1 6.9369 -6.5548 0.9083 36 1 6.8678 -8.9557 -0.4943 37 1 9.7504 -4.2836 -1.4399 38 1 8.4111 -2.2715 -1.0838 39 1 7.3330 1.6171 0.0120 40 1 3.0590 4.1018 -0.7583 41 1 2.4847 3.5742 0.8418 42 1 3.9680 4.5486 0.7054 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361696015.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:19 Heat of formation + Delta-G solvation = -79.569528 kcal Electronic energy + Delta-G solvation = -27768.433848 eV Core-core repulsion = 23677.663927 eV Total energy + Delta-G solvation = -4090.769922 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.30505 -41.33046 -40.35659 -38.98039 -37.70232 -36.27989 -35.71163 -33.83819 -33.01539 -31.87426 -31.30195 -29.20493 -28.34743 -27.34735 -25.89325 -24.30128 -23.40222 -22.89092 -22.17458 -21.31606 -19.76682 -19.33053 -18.50991 -18.41543 -17.58246 -17.40931 -17.35359 -17.01203 -16.91993 -15.96108 -15.75964 -15.66505 -15.43897 -15.06324 -14.76843 -14.55464 -14.33994 -14.25234 -14.01114 -13.70207 -13.66386 -13.46311 -13.27678 -13.14577 -12.98205 -12.85795 -12.63057 -12.39402 -11.92818 -11.84890 -11.77596 -11.63581 -11.36920 -11.17112 -11.09623 -10.97830 -10.51991 -9.59251 -9.53769 -9.27177 -8.78953 -6.50919 -0.68831 -0.10022 0.43155 1.15699 1.28542 1.38619 1.42853 1.53413 1.56750 1.99012 2.02594 2.15544 2.56240 2.77960 3.21153 3.39620 3.58406 3.66839 3.67991 3.90793 4.13902 4.22426 4.25486 4.29968 4.35189 4.40497 4.64228 4.65522 4.70078 4.75221 4.93634 4.97613 4.98672 5.01926 5.08454 5.18985 5.23603 5.37614 5.57582 5.60003 5.75927 5.90987 6.00355 6.19278 6.47126 6.52769 6.55454 6.66930 6.75507 6.87344 7.21664 8.15370 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020474 B = 0.002258 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.269657 B =12396.527725 C =13577.666648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.366 6.366 3 C 0.517 3.483 4 O -0.507 6.507 5 C -0.177 4.177 6 C -0.035 4.035 7 C 0.083 3.917 8 N -0.657 5.657 9 C 0.574 3.426 10 O -0.581 6.581 11 C -0.292 4.292 12 C -0.046 4.046 13 C -0.201 4.201 14 C 0.102 3.898 15 C -0.467 4.467 16 H 0.093 0.907 17 C 0.032 3.968 18 N -0.804 5.804 19 Si 0.989 3.011 20 H -0.262 1.262 21 H -0.269 1.269 22 H -0.251 1.251 23 C -0.243 4.243 24 C -0.035 4.035 25 C 0.128 3.872 26 N -0.475 5.475 27 C 0.166 3.834 28 C -0.102 4.102 29 H 0.072 0.928 30 H 0.124 0.876 31 H 0.070 0.930 32 H 0.139 0.861 33 H 0.428 0.572 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.295 0.705 37 H 0.119 0.881 38 H 0.141 0.859 39 H 0.205 0.795 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.993 13.971 -1.662 14.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.282 6.282 3 C 0.362 3.638 4 O -0.398 6.398 5 C -0.181 4.181 6 C -0.063 4.063 7 C -0.014 4.014 8 N -0.304 5.304 9 C 0.370 3.630 10 O -0.463 6.463 11 C -0.296 4.296 12 C -0.065 4.065 13 C -0.221 4.221 14 C 0.099 3.901 15 C -0.495 4.495 16 H 0.112 0.888 17 C -0.186 4.186 18 N -0.428 5.428 19 Si 0.808 3.192 20 H -0.187 1.187 21 H -0.193 1.193 22 H -0.174 1.174 23 C -0.262 4.262 24 C -0.053 4.053 25 C -0.033 4.033 26 N -0.183 5.183 27 C 0.028 3.972 28 C -0.158 4.158 29 H 0.091 0.909 30 H 0.142 0.858 31 H 0.089 0.911 32 H 0.157 0.843 33 H 0.269 0.731 34 H 0.111 0.889 35 H 0.121 0.879 36 H 0.106 0.894 37 H 0.137 0.863 38 H 0.159 0.841 39 H 0.221 0.779 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.719 14.797 -1.174 15.575 hybrid contribution -0.221 -2.052 -0.136 2.068 sum -4.939 12.745 -1.310 13.731 Atomic orbital electron populations 1.23620 0.73747 1.05721 1.03232 1.86618 1.25817 1.32105 1.83673 1.20877 0.88620 0.81705 0.72597 1.90760 1.66926 1.35485 1.46591 1.19908 0.90710 0.95071 1.12415 1.21905 0.93147 0.98910 0.92341 1.18843 0.90607 0.89144 1.02848 1.43189 1.23376 1.06841 1.57034 1.18582 0.84180 0.83339 0.76910 1.90681 1.27716 1.86102 1.41754 1.18959 1.02091 0.92259 1.16322 1.20543 0.97175 0.92428 0.96377 1.20956 0.99462 0.97157 1.04515 1.18189 0.91306 0.93612 0.87003 1.20193 0.97148 0.90990 1.41137 0.88847 1.27008 0.96241 1.04541 0.90860 1.69786 1.12265 1.28877 1.31851 0.85086 0.79069 0.75353 0.79651 1.18702 1.19325 1.17406 1.20980 1.03758 0.93513 1.07959 1.20744 0.92076 0.98189 0.94312 1.23440 1.02210 0.85093 0.92517 1.67777 1.04993 1.31381 1.14188 1.21743 0.90268 0.94209 0.91018 1.21013 0.98658 0.91874 1.04301 0.90904 0.85756 0.91143 0.84343 0.73085 0.88901 0.87881 0.89395 0.86329 0.84125 0.77863 0.89127 0.89140 0.89460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.56 113.37 1.20 1.73 16 2 O -0.37 -9.96 9.91 -56.16 -0.56 -10.51 16 3 C 0.52 14.43 7.84 70.33 0.55 14.98 16 4 O -0.51 -14.04 13.14 19.94 0.26 -13.77 16 5 C -0.18 -5.01 5.89 -20.02 -0.12 -5.13 16 6 C -0.04 -1.08 8.32 22.87 0.19 -0.89 16 7 C 0.08 2.25 6.29 38.23 0.24 2.49 16 8 N -0.66 -18.24 5.29 -306.08 -1.62 -19.86 16 9 C 0.57 21.79 7.52 86.71 0.65 22.44 16 10 O -0.58 -25.74 14.06 -4.04 -0.06 -25.80 16 11 C -0.29 -12.11 5.89 -19.94 -0.12 -12.23 16 12 C -0.05 -2.18 9.52 22.26 0.21 -1.96 16 13 C -0.20 -10.18 8.61 22.47 0.19 -9.99 16 14 C 0.10 5.01 5.56 -21.28 -0.12 4.89 16 15 C -0.47 -22.42 9.05 23.45 0.21 -22.21 16 16 H 0.09 4.17 7.89 -2.91 -0.02 4.15 16 17 C 0.03 1.46 5.18 85.35 0.44 1.90 16 18 N -0.80 -38.98 10.92 21.87 0.24 -38.74 16 19 Si 0.99 34.18 29.59 68.60 2.03 36.21 16 20 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 21 H -0.27 -8.95 7.11 99.48 0.71 -8.24 16 22 H -0.25 -8.26 7.11 99.48 0.71 -7.56 16 23 C -0.24 -10.18 9.73 22.47 0.22 -9.97 16 24 C -0.03 -1.27 9.47 22.25 0.21 -1.06 16 25 C 0.13 2.76 11.11 84.88 0.94 3.70 16 26 N -0.47 -11.39 10.25 -182.32 -1.87 -13.26 16 27 C 0.17 4.20 6.82 42.91 0.29 4.49 16 28 C -0.10 -2.09 8.86 71.24 0.63 -1.46 16 29 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.12 1.68 8.14 -2.38 -0.02 1.67 16 31 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.14 4.94 6.19 -2.91 -0.02 4.93 16 33 H 0.43 8.74 6.84 -92.72 -0.63 8.10 16 34 H 0.09 4.45 7.63 -2.91 -0.02 4.43 16 35 H 0.10 5.48 6.20 -2.91 -0.02 5.46 16 36 H 0.29 12.87 8.29 -92.71 -0.77 12.10 16 37 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 38 H 0.14 3.63 6.39 -2.91 -0.02 3.61 16 39 H 0.20 2.73 8.06 -2.91 -0.02 2.71 16 40 H 0.09 1.71 8.14 -2.38 -0.02 1.70 16 41 H 0.09 2.01 5.85 -2.38 -0.01 2.00 16 42 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -63.67 362.80 4.72 -58.94 By element: Atomic # 1 Polarization: 34.60 SS G_CDS: 0.46 Total: 35.06 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: 5.83 Total: -8.26 kcal Atomic # 7 Polarization: -68.61 SS G_CDS: -3.25 Total: -71.86 kcal Atomic # 8 Polarization: -49.74 SS G_CDS: -0.35 Total: -50.09 kcal Atomic # 14 Polarization: 34.18 SS G_CDS: 2.03 Total: 36.21 kcal Total: -63.67 4.72 -58.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361696015.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.625 kcal (2) G-P(sol) polarization free energy of solvation -63.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds