Wall clock time and date at job start Sat Apr 11 2020 05:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38248 * 119.88965 * 2 1 4 4 C 1.38963 * 120.22449 * 179.97438 * 3 2 1 5 5 N 1.39878 * 120.00190 * 179.97438 * 4 3 2 6 6 C 1.34784 * 120.00017 * 146.41551 * 5 4 3 7 7 O 1.21600 * 119.99602 * 354.76320 * 6 5 4 8 8 C 1.47503 * 119.99672 * 174.76356 * 6 5 4 9 9 C 1.39675 * 120.20205 * 359.97438 * 8 6 5 10 10 C 1.37823 * 119.91920 * 180.27705 * 9 8 6 11 11 C 1.38581 * 120.32211 * 359.49040 * 10 9 8 12 12 C 1.38018 * 120.40506 * 0.51496 * 11 10 9 13 13 C 1.38838 * 120.07408 * 359.74024 * 12 11 10 14 14 O 1.35519 * 120.15981 * 180.02562 * 13 12 11 15 15 C 1.34808 * 117.00132 * 6.12013 * 14 13 12 16 16 H 1.08002 * 120.00416 * 5.39160 * 15 14 13 17 17 C 1.38703 * 120.00047 * 185.39181 * 15 14 13 18 18 N 1.31512 * 120.00245 * 180.02562 * 17 15 14 19 19 Si 1.86807 * 119.99807 * 0.02562 * 17 15 14 20 20 H 1.48490 * 109.47044 * 89.99950 * 19 17 15 21 21 H 1.48497 * 109.46982 * 210.00149 * 19 17 15 22 22 H 1.48503 * 109.46781 * 330.00094 * 19 17 15 23 23 C 1.38654 * 119.99643 * 0.22654 * 4 3 2 24 24 C 1.39460 * 119.77625 * 359.49592 * 23 4 3 25 25 C 1.47856 * 120.10948 * 180.25358 * 24 23 4 26 26 N 1.34770 * 120.00347 * 0.27638 * 25 24 23 27 27 O 1.21554 * 119.99647 * 180.27344 * 25 24 23 28 28 C 1.37982 * 119.88768 * 179.97438 * 2 1 3 29 29 H 1.09009 * 109.46893 * 90.00368 * 1 2 3 30 30 H 1.08995 * 109.47567 * 209.99715 * 1 2 3 31 31 H 1.08996 * 109.47224 * 330.00907 * 1 2 3 32 32 H 1.08000 * 119.88937 * 359.97170 * 3 2 1 33 33 H 0.97000 * 120.00161 * 326.40668 * 5 4 3 34 34 H 1.08002 * 120.03868 * 0.02562 * 9 8 6 35 35 H 1.07999 * 119.84071 * 179.74750 * 10 9 8 36 36 H 1.08002 * 119.79497 * 180.25285 * 11 10 9 37 37 H 1.08005 * 119.96611 * 179.77053 * 12 11 10 38 38 H 0.97004 * 119.99846 * 180.02562 * 18 17 15 39 39 H 1.08004 * 120.11636 * 179.73278 * 23 4 3 40 40 H 0.96996 * 120.00058 * 359.97438 * 26 25 24 41 41 H 0.97004 * 120.00241 * 180.02562 * 26 25 24 42 42 H 1.08004 * 119.99711 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1986 0.0000 4 6 3.5855 1.2067 0.0005 5 7 4.2778 2.4221 0.0000 6 6 5.4561 2.5268 0.6461 7 8 5.8712 1.5953 1.3082 8 6 6.2418 3.7715 0.5498 9 6 5.7691 4.8439 -0.2100 10 6 6.5108 6.0020 -0.3006 11 6 7.7198 6.1126 0.3676 12 6 8.1996 5.0612 1.1222 13 6 7.4687 3.8849 1.2206 14 8 7.9379 2.8517 1.9614 15 6 9.0568 3.0725 2.6803 16 1 9.4880 4.0620 2.7180 17 6 9.6542 2.0289 3.3715 18 7 10.7454 2.2443 4.0732 19 14 8.9088 0.3172 3.3057 20 1 9.4922 -0.4332 2.1649 21 1 9.2031 -0.3998 4.5723 22 1 7.4383 0.4243 3.1276 23 6 4.2857 0.0100 -0.0037 24 6 3.5907 -1.1991 0.0022 25 6 4.3300 -2.4796 0.0034 26 7 5.6777 -2.4797 0.0045 27 8 3.7221 -3.5322 0.0035 28 6 2.1945 -1.1963 0.0005 29 1 -0.3633 -0.0001 -1.0278 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5137 32 1 1.6523 2.1318 -0.0005 33 1 3.9101 3.1896 -0.4654 34 1 4.8255 4.7641 -0.7293 35 1 6.1460 6.8289 -0.8918 36 1 8.2921 7.0256 0.2941 37 1 9.1445 5.1538 1.6370 38 1 11.1634 1.5143 4.5563 39 1 5.3657 0.0140 -0.0076 40 1 6.1627 -1.6397 0.0041 41 1 6.1627 -3.3198 0.0049 42 1 1.6526 -2.1306 0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361834236.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:28 Heat of formation + Delta-G solvation = -44.927137 kcal Electronic energy + Delta-G solvation = -28738.193596 eV Core-core repulsion = 24648.925881 eV Total energy + Delta-G solvation = -4089.267715 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.71122 -39.78577 -38.90988 -37.85855 -36.68703 -34.72425 -33.97826 -32.58611 -32.32905 -31.18614 -29.45938 -29.32501 -27.02440 -25.47384 -24.28022 -23.92409 -22.12601 -21.19224 -20.44561 -19.93848 -18.46691 -18.04299 -17.78441 -16.89906 -16.42119 -16.25058 -16.03760 -15.25369 -14.96114 -14.79095 -14.59565 -14.49304 -14.24118 -14.07500 -13.88557 -13.80887 -13.61458 -13.17682 -13.00474 -12.49146 -12.41861 -12.32045 -12.18214 -11.78640 -11.71093 -11.55250 -11.38154 -10.96257 -10.86320 -10.32373 -10.16221 -10.06057 -9.78750 -9.72719 -9.31662 -9.01371 -8.87411 -8.57161 -8.10018 -7.62571 -6.59479 -4.24518 0.76065 1.16641 1.48157 2.05017 2.76242 3.15273 3.20643 3.24570 3.31979 3.50057 3.54422 3.82404 4.22387 4.34940 4.58222 4.60572 4.67874 4.95376 4.98169 5.04059 5.15733 5.17787 5.23029 5.29115 5.42333 5.49794 5.55406 5.60762 5.75350 5.86601 5.89752 6.13850 6.22449 6.25100 6.34101 6.39635 6.44039 6.67611 6.73751 6.85818 6.95053 7.01649 7.30128 7.33672 7.50119 7.62827 7.81670 8.20419 8.51346 8.74982 9.36121 10.45403 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009724 B = 0.004282 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2878.656649 B = 6538.014307 C = 8922.931550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.077 4.077 3 C -0.127 4.127 4 C 0.162 3.838 5 N -0.683 5.683 6 C 0.560 3.440 7 O -0.499 6.499 8 C -0.232 4.232 9 C -0.039 4.039 10 C -0.219 4.219 11 C -0.048 4.048 12 C -0.224 4.224 13 C 0.202 3.798 14 O -0.163 6.163 15 C -0.397 4.397 16 H 0.109 0.891 17 C 0.073 3.927 18 N -0.865 5.865 19 Si 0.894 3.106 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.232 1.232 23 C -0.095 4.095 24 C -0.117 4.117 25 C 0.568 3.432 26 N -0.848 5.848 27 O -0.548 6.548 28 C -0.083 4.083 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.129 0.871 33 H 0.407 0.593 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.140 0.860 38 H 0.283 0.717 39 H 0.141 0.859 40 H 0.406 0.594 41 H 0.404 0.596 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.815 1.281 -10.780 18.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.077 4.077 3 C -0.148 4.148 4 C 0.067 3.933 5 N -0.330 5.330 6 C 0.353 3.647 7 O -0.373 6.373 8 C -0.237 4.237 9 C -0.058 4.058 10 C -0.238 4.238 11 C -0.066 4.066 12 C -0.243 4.243 13 C 0.144 3.856 14 O -0.063 6.063 15 C -0.471 4.471 16 H 0.126 0.874 17 C -0.134 4.134 18 N -0.500 5.500 19 Si 0.718 3.282 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.155 1.155 23 C -0.116 4.116 24 C -0.121 4.121 25 C 0.355 3.645 26 N -0.411 5.411 27 O -0.427 6.427 28 C -0.103 4.103 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.147 0.853 33 H 0.244 0.756 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.157 0.843 38 H 0.093 0.907 39 H 0.158 0.842 40 H 0.237 0.763 41 H 0.235 0.765 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -14.840 -0.266 -10.061 17.931 hybrid contribution 0.461 0.101 -0.083 0.479 sum -14.379 -0.165 -10.144 17.598 Atomic orbital electron populations 1.20774 0.90485 1.03062 1.02475 1.19603 0.96229 0.92069 0.99821 1.20954 0.92028 0.98500 1.03274 1.17532 0.90727 0.85953 0.99075 1.43586 1.22684 1.11666 1.55018 1.18380 0.79760 0.88318 0.78268 1.90875 1.68509 1.39712 1.38250 1.18647 0.97245 0.95936 1.11864 1.20757 0.97674 0.92188 0.95146 1.20554 0.97734 0.98574 1.06984 1.21007 0.94795 0.97254 0.93575 1.21310 1.02979 0.94086 1.05961 1.18993 0.90721 0.87737 0.88154 1.83767 1.39843 1.33068 1.49604 1.20930 1.01590 0.99104 1.25504 0.87378 1.24510 0.94491 0.99951 0.94407 1.69627 1.17355 1.34413 1.28560 0.86295 0.83145 0.81364 0.77433 1.19922 1.21035 1.15488 1.21349 1.00945 0.90328 0.99016 1.19711 0.94272 0.92325 1.05794 1.18227 0.82408 0.88779 0.75129 1.43821 1.07081 1.13077 1.77141 1.90780 1.68447 1.32868 1.50568 1.21032 0.92427 0.98259 0.98565 0.90985 0.91224 0.91359 0.85271 0.75601 0.86797 0.86823 0.86670 0.84285 0.90661 0.84190 0.76301 0.76481 0.84758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.00 36.00 0.36 -0.49 16 2 C -0.08 -0.83 5.87 -104.71 -0.61 -1.45 16 3 C -0.13 -1.41 9.60 -39.31 -0.38 -1.79 16 4 C 0.16 2.23 6.26 -83.76 -0.52 1.70 16 5 N -0.68 -9.26 5.28 -10.84 -0.06 -9.32 16 6 C 0.56 10.21 7.50 -12.48 -0.09 10.12 16 7 O -0.50 -11.05 12.68 -16.58 -0.21 -11.26 16 8 C -0.23 -4.25 5.89 -104.82 -0.62 -4.87 16 9 C -0.04 -0.55 9.53 -39.20 -0.37 -0.93 16 10 C -0.22 -3.06 10.03 -39.61 -0.40 -3.46 16 11 C -0.05 -0.75 10.03 -39.54 -0.40 -1.14 16 12 C -0.22 -4.39 9.12 -39.44 -0.36 -4.75 16 13 C 0.20 4.40 6.66 -38.59 -0.26 4.15 16 14 O -0.16 -4.17 6.67 -21.04 -0.14 -4.31 16 15 C -0.40 -10.73 9.90 30.90 0.31 -10.43 16 16 H 0.11 2.93 5.54 -52.49 -0.29 2.64 16 17 C 0.07 1.99 5.49 -17.52 -0.10 1.90 16 18 N -0.86 -24.18 13.96 55.48 0.77 -23.41 16 19 Si 0.89 21.65 28.62 -169.99 -4.86 16.79 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.23 -5.91 6.90 56.52 0.39 -5.52 16 23 C -0.10 -1.43 8.14 -38.97 -0.32 -1.75 16 24 C -0.12 -1.70 5.87 -104.99 -0.62 -2.32 16 25 C 0.57 8.66 8.05 -12.33 -0.10 8.56 16 26 N -0.85 -10.83 8.82 30.53 0.27 -10.56 16 27 O -0.55 -9.70 17.18 5.32 0.09 -9.60 16 28 C -0.08 -1.07 9.24 -39.16 -0.36 -1.43 16 29 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 30 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 31 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 32 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 33 H 0.41 4.04 6.86 -40.82 -0.28 3.76 16 34 H 0.11 1.14 6.42 -52.49 -0.34 0.81 16 35 H 0.11 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 37 H 0.14 2.85 5.72 -52.48 -0.30 2.55 16 38 H 0.28 7.34 8.31 -40.82 -0.34 7.01 16 39 H 0.14 2.25 4.79 -52.48 -0.25 2.00 16 40 H 0.41 5.07 6.86 -40.82 -0.28 4.79 16 41 H 0.40 4.37 8.93 -40.82 -0.36 4.01 16 42 H 0.13 1.65 7.65 -52.48 -0.40 1.25 16 LS Contribution 361.06 15.07 5.44 5.44 Total: -1.00 -33.26 361.06 -7.71 -40.98 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -4.18 Total: 13.63 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -4.84 Total: -8.37 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: 0.99 Total: -43.28 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.26 Total: -25.17 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.86 Total: 16.79 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.26 -7.71 -40.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361834236.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.951 kcal (2) G-P(sol) polarization free energy of solvation -33.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds