Wall clock time and date at job start Sat Apr 11 2020 05:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38248 * 119.88965 * 2 1 4 4 C 1.38963 * 120.22449 * 179.97438 * 3 2 1 5 5 N 1.39878 * 120.00190 * 179.97438 * 4 3 2 6 6 C 1.34784 * 120.00017 * 146.41551 * 5 4 3 7 7 O 1.21600 * 119.99602 * 354.76320 * 6 5 4 8 8 C 1.47503 * 119.99672 * 174.76356 * 6 5 4 9 9 C 1.39675 * 120.20205 * 359.97438 * 8 6 5 10 10 C 1.37823 * 119.91920 * 180.27705 * 9 8 6 11 11 C 1.38581 * 120.32211 * 359.49040 * 10 9 8 12 12 C 1.38018 * 120.40506 * 0.51496 * 11 10 9 13 13 C 1.38838 * 120.07408 * 359.74024 * 12 11 10 14 14 O 1.35519 * 120.15981 * 180.02562 * 13 12 11 15 15 C 1.34808 * 117.00132 * 6.12013 * 14 13 12 16 16 H 1.08002 * 120.00416 * 5.39160 * 15 14 13 17 17 C 1.38703 * 120.00047 * 185.39181 * 15 14 13 18 18 N 1.31512 * 120.00245 * 180.02562 * 17 15 14 19 19 Si 1.86807 * 119.99807 * 0.02562 * 17 15 14 20 20 H 1.48490 * 109.47044 * 89.99950 * 19 17 15 21 21 H 1.48497 * 109.46982 * 210.00149 * 19 17 15 22 22 H 1.48503 * 109.46781 * 330.00094 * 19 17 15 23 23 C 1.38654 * 119.99643 * 0.22654 * 4 3 2 24 24 C 1.39460 * 119.77625 * 359.49592 * 23 4 3 25 25 C 1.47856 * 120.10948 * 180.25358 * 24 23 4 26 26 N 1.34770 * 120.00347 * 0.27638 * 25 24 23 27 27 O 1.21554 * 119.99647 * 180.27344 * 25 24 23 28 28 C 1.37982 * 119.88768 * 179.97438 * 2 1 3 29 29 H 1.09009 * 109.46893 * 90.00368 * 1 2 3 30 30 H 1.08995 * 109.47567 * 209.99715 * 1 2 3 31 31 H 1.08996 * 109.47224 * 330.00907 * 1 2 3 32 32 H 1.08000 * 119.88937 * 359.97170 * 3 2 1 33 33 H 0.97000 * 120.00161 * 326.40668 * 5 4 3 34 34 H 1.08002 * 120.03868 * 0.02562 * 9 8 6 35 35 H 1.07999 * 119.84071 * 179.74750 * 10 9 8 36 36 H 1.08002 * 119.79497 * 180.25285 * 11 10 9 37 37 H 1.08005 * 119.96611 * 179.77053 * 12 11 10 38 38 H 0.97004 * 119.99846 * 180.02562 * 18 17 15 39 39 H 1.08004 * 120.11636 * 179.73278 * 23 4 3 40 40 H 0.96996 * 120.00058 * 359.97438 * 26 25 24 41 41 H 0.97004 * 120.00241 * 180.02562 * 26 25 24 42 42 H 1.08004 * 119.99711 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1986 0.0000 4 6 3.5855 1.2067 0.0005 5 7 4.2778 2.4221 0.0000 6 6 5.4561 2.5268 0.6461 7 8 5.8712 1.5953 1.3082 8 6 6.2418 3.7715 0.5498 9 6 5.7691 4.8439 -0.2100 10 6 6.5108 6.0020 -0.3006 11 6 7.7198 6.1126 0.3676 12 6 8.1996 5.0612 1.1222 13 6 7.4687 3.8849 1.2206 14 8 7.9379 2.8517 1.9614 15 6 9.0568 3.0725 2.6803 16 1 9.4880 4.0620 2.7180 17 6 9.6542 2.0289 3.3715 18 7 10.7454 2.2443 4.0732 19 14 8.9088 0.3172 3.3057 20 1 9.4922 -0.4332 2.1649 21 1 9.2031 -0.3998 4.5723 22 1 7.4383 0.4243 3.1276 23 6 4.2857 0.0100 -0.0037 24 6 3.5907 -1.1991 0.0022 25 6 4.3300 -2.4796 0.0034 26 7 5.6777 -2.4797 0.0045 27 8 3.7221 -3.5322 0.0035 28 6 2.1945 -1.1963 0.0005 29 1 -0.3633 -0.0001 -1.0278 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5137 32 1 1.6523 2.1318 -0.0005 33 1 3.9101 3.1896 -0.4654 34 1 4.8255 4.7641 -0.7293 35 1 6.1460 6.8289 -0.8918 36 1 8.2921 7.0256 0.2941 37 1 9.1445 5.1538 1.6370 38 1 11.1634 1.5143 4.5563 39 1 5.3657 0.0140 -0.0076 40 1 6.1627 -1.6397 0.0041 41 1 6.1627 -3.3198 0.0049 42 1 1.6526 -2.1306 0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361834236.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:28 Heat of formation + Delta-G solvation = -68.486075 kcal Electronic energy + Delta-G solvation = -28739.215188 eV Core-core repulsion = 24648.925881 eV Total energy + Delta-G solvation = -4090.289307 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.93174 -41.11042 -40.28250 -39.09157 -38.17115 -35.95862 -35.12117 -34.52612 -33.30825 -32.47795 -30.80944 -30.55294 -27.83242 -27.31817 -25.35260 -25.23236 -23.47041 -22.52012 -21.60689 -21.14717 -19.81863 -19.75386 -19.03992 -18.24906 -17.71288 -17.44376 -17.05866 -16.57227 -16.41886 -16.07980 -15.95601 -15.84640 -15.67527 -15.48659 -15.24223 -15.14781 -14.56045 -14.50030 -14.23566 -14.04414 -14.02331 -13.27395 -13.10609 -13.04591 -12.85897 -12.66244 -12.62213 -12.57905 -12.38042 -12.02316 -11.57641 -11.49731 -11.24314 -10.97739 -10.88465 -10.76101 -9.94173 -9.82338 -9.24984 -9.09585 -8.58375 -6.27432 -0.28238 -0.06390 0.32616 0.64900 1.26191 1.28458 1.58493 1.63505 1.96021 2.00306 2.27981 2.42860 2.72443 2.80163 3.01132 3.13304 3.58182 3.74580 3.83985 4.00688 4.10866 4.19852 4.23176 4.29340 4.31882 4.48111 4.55118 4.64969 4.78951 4.83323 4.91712 5.03889 5.13651 5.16487 5.21998 5.29510 5.39985 5.46703 5.50612 5.61192 5.68875 5.70145 5.82267 5.91300 6.14375 6.17113 6.46483 6.78177 7.07695 7.21817 7.55923 8.51818 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009724 B = 0.004282 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2878.656649 B = 6538.014307 C = 8922.931550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.069 4.069 3 C -0.109 4.109 4 C 0.142 3.858 5 N -0.657 5.657 6 C 0.557 3.443 7 O -0.545 6.545 8 C -0.233 4.233 9 C -0.028 4.028 10 C -0.189 4.189 11 C -0.040 4.040 12 C -0.251 4.251 13 C 0.166 3.834 14 O -0.205 6.205 15 C -0.401 4.401 16 H 0.090 0.910 17 C 0.025 3.975 18 N -0.912 5.912 19 Si 0.950 3.050 20 H -0.266 1.266 21 H -0.276 1.276 22 H -0.256 1.256 23 C -0.112 4.112 24 C -0.135 4.135 25 C 0.563 3.437 26 N -0.838 5.838 27 O -0.580 6.580 28 C -0.088 4.088 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.169 0.831 33 H 0.428 0.572 34 H 0.170 0.830 35 H 0.167 0.833 36 H 0.149 0.851 37 H 0.114 0.886 38 H 0.285 0.715 39 H 0.120 0.880 40 H 0.409 0.591 41 H 0.413 0.587 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.196 3.986 -13.709 23.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.070 4.070 3 C -0.129 4.129 4 C 0.048 3.952 5 N -0.306 5.306 6 C 0.349 3.651 7 O -0.423 6.423 8 C -0.238 4.238 9 C -0.046 4.046 10 C -0.207 4.207 11 C -0.058 4.058 12 C -0.271 4.271 13 C 0.112 3.888 14 O -0.109 6.109 15 C -0.477 4.477 16 H 0.107 0.893 17 C -0.175 4.175 18 N -0.552 5.552 19 Si 0.773 3.227 20 H -0.191 1.191 21 H -0.201 1.201 22 H -0.180 1.180 23 C -0.134 4.134 24 C -0.139 4.139 25 C 0.350 3.650 26 N -0.401 5.401 27 O -0.461 6.461 28 C -0.108 4.108 29 H 0.109 0.891 30 H 0.091 0.909 31 H 0.105 0.895 32 H 0.186 0.814 33 H 0.269 0.731 34 H 0.187 0.813 35 H 0.185 0.815 36 H 0.167 0.833 37 H 0.132 0.868 38 H 0.095 0.905 39 H 0.138 0.862 40 H 0.239 0.761 41 H 0.245 0.755 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -19.261 2.494 -13.060 23.405 hybrid contribution 1.467 -0.415 0.486 1.600 sum -17.794 2.079 -12.575 21.888 Atomic orbital electron populations 1.20870 0.87577 1.04212 1.03973 1.20017 0.98154 0.91066 0.97781 1.21323 0.90700 1.00200 1.00663 1.17710 0.91866 0.85243 1.00398 1.43199 1.21046 1.12460 1.53850 1.18493 0.80811 0.87690 0.78108 1.90877 1.69869 1.41147 1.40358 1.19083 0.95926 0.97452 1.11308 1.21391 0.99443 0.90440 0.93298 1.21244 0.95676 0.99436 1.04346 1.21469 0.95771 0.96928 0.91672 1.21337 1.02670 0.95226 1.07824 1.19730 0.92298 0.87856 0.88889 1.83750 1.40036 1.34722 1.52392 1.20842 1.02189 0.98378 1.26262 0.89285 1.25071 0.95127 1.02481 0.94851 1.69687 1.19159 1.35132 1.31215 0.85475 0.80751 0.78712 0.77743 1.19150 1.20116 1.17967 1.21268 1.00253 0.91436 1.00413 1.19726 0.95121 0.91658 1.07351 1.18495 0.82917 0.88886 0.74688 1.43776 1.06652 1.13676 1.76006 1.90749 1.69076 1.33848 1.52459 1.21255 0.91787 0.99520 0.98245 0.89149 0.90908 0.89479 0.81366 0.73141 0.81257 0.81533 0.83316 0.86846 0.90541 0.86177 0.76059 0.75521 0.84580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 10.00 71.23 0.71 -0.46 16 2 C -0.07 -1.27 5.87 -19.92 -0.12 -1.39 16 3 C -0.11 -1.96 9.60 22.45 0.22 -1.74 16 4 C 0.14 3.58 6.26 38.13 0.24 3.81 16 5 N -0.66 -15.73 5.28 -306.47 -1.62 -17.35 16 6 C 0.56 19.73 7.50 86.68 0.65 20.38 16 7 O -0.55 -24.92 12.68 16.87 0.21 -24.71 16 8 C -0.23 -8.13 5.89 -19.99 -0.12 -8.25 16 9 C -0.03 -0.62 9.53 22.52 0.21 -0.41 16 10 C -0.19 -4.03 10.03 22.25 0.22 -3.80 16 11 C -0.04 -1.12 10.03 22.30 0.22 -0.89 16 12 C -0.25 -9.97 9.12 22.36 0.20 -9.76 16 13 C 0.17 7.40 6.66 22.91 0.15 7.55 16 14 O -0.21 -11.17 6.67 0.91 0.01 -11.16 16 15 C -0.40 -23.44 9.90 67.93 0.67 -22.77 16 16 H 0.09 5.32 5.54 -2.91 -0.02 5.30 16 17 C 0.03 1.47 5.49 84.85 0.47 1.93 16 18 N -0.91 -54.61 13.96 21.62 0.30 -54.30 16 19 Si 0.95 48.11 28.62 68.60 1.96 50.07 16 20 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 21 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 22 H -0.26 -13.79 6.90 99.48 0.69 -13.10 16 23 C -0.11 -3.38 8.14 22.66 0.18 -3.19 16 24 C -0.13 -3.93 5.87 -20.10 -0.12 -4.05 16 25 C 0.56 17.71 8.05 86.79 0.70 18.41 16 26 N -0.84 -22.48 8.82 -175.60 -1.55 -24.03 16 27 O -0.58 -21.07 17.18 -3.89 -0.07 -21.13 16 28 C -0.09 -2.16 9.24 22.54 0.21 -1.95 16 29 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.07 0.78 8.08 -2.39 -0.02 0.76 16 31 H 0.09 0.66 8.08 -2.39 -0.02 0.64 16 32 H 0.17 1.71 8.06 -2.91 -0.02 1.69 16 33 H 0.43 6.11 6.86 -92.71 -0.64 5.47 16 34 H 0.17 1.99 6.42 -2.91 -0.02 1.97 16 35 H 0.17 2.05 8.06 -2.91 -0.02 2.03 16 36 H 0.15 3.14 8.06 -2.91 -0.02 3.11 16 37 H 0.11 5.03 5.72 -2.91 -0.02 5.01 16 38 H 0.28 15.78 8.31 -92.71 -0.77 15.01 16 39 H 0.12 4.06 4.79 -2.91 -0.01 4.05 16 40 H 0.41 10.91 6.86 -92.71 -0.64 10.28 16 41 H 0.41 9.37 8.93 -92.70 -0.83 8.54 16 42 H 0.14 3.22 7.65 -2.91 -0.02 3.20 16 Total: -1.00 -82.23 361.06 2.98 -79.26 By element: Atomic # 1 Polarization: 30.93 SS G_CDS: -0.99 Total: 29.94 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: 4.71 Total: -6.58 kcal Atomic # 7 Polarization: -92.81 SS G_CDS: -2.87 Total: -95.68 kcal Atomic # 8 Polarization: -57.16 SS G_CDS: 0.15 Total: -57.00 kcal Atomic # 14 Polarization: 48.11 SS G_CDS: 1.96 Total: 50.07 kcal Total: -82.23 2.98 -79.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361834236.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.771 kcal (2) G-P(sol) polarization free energy of solvation -82.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds