Wall clock time and date at job start Sat Apr 11 2020 05:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34746 * 117.00308 * 2 1 4 4 O 1.21502 * 119.99936 * 359.97438 * 3 2 1 5 5 C 1.47463 * 120.00165 * 180.02562 * 3 2 1 6 6 C 1.39667 * 120.48782 * 353.49554 * 5 3 2 7 7 N 1.31628 * 120.50895 * 179.72861 * 6 5 3 8 8 C 1.32592 * 121.65272 * 0.02562 * 7 6 5 9 9 N 1.38809 * 119.52516 * 180.02562 * 8 7 6 10 10 C 1.34768 * 120.00441 * 5.42656 * 9 8 7 11 11 O 1.21590 * 120.00050 * 5.61373 * 10 9 8 12 12 C 1.47575 * 120.00192 * 185.61896 * 10 9 8 13 13 C 1.40046 * 119.89887 * 359.72161 * 12 10 9 14 14 C 1.36296 * 120.10355 * 179.71743 * 13 12 10 15 15 C 1.40901 * 119.89818 * 0.55695 * 14 13 12 16 16 C 1.41085 * 120.10362 * 179.69486 * 15 14 13 17 17 H 1.07997 * 119.99964 * 183.84766 * 16 15 14 18 18 C 1.40234 * 119.99988 * 3.85323 * 16 15 14 19 19 N 1.30639 * 120.00466 * 38.21525 * 18 16 15 20 20 Si 1.86802 * 119.99735 * 218.21635 * 18 16 15 21 21 H 1.48497 * 109.47425 * 94.99854 * 20 18 16 22 22 H 1.48509 * 109.46991 * 214.99607 * 20 18 16 23 23 H 1.48497 * 109.47155 * 334.99430 * 20 18 16 24 24 C 1.40898 * 119.79510 * 359.72179 * 15 14 13 25 25 C 1.36302 * 119.89816 * 359.97438 * 24 15 14 26 26 C 1.39278 * 120.94208 * 359.96958 * 8 7 6 27 27 C 1.36946 * 119.39251 * 0.05180 * 26 8 7 28 28 C 1.50696 * 120.76010 * 179.97438 * 27 26 8 29 29 H 1.09004 * 109.46856 * 60.00170 * 1 2 3 30 30 H 1.08992 * 109.47507 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47424 * 300.00853 * 1 2 3 32 32 H 1.07998 * 119.74696 * 359.75137 * 6 5 3 33 33 H 0.97001 * 119.99785 * 185.42494 * 9 8 7 34 34 H 1.08000 * 119.94808 * 0.02562 * 13 12 10 35 35 H 1.08003 * 120.05164 * 180.25195 * 14 13 12 36 36 H 0.96997 * 120.00492 * 180.02562 * 19 18 16 37 37 H 1.08001 * 120.05327 * 179.97438 * 24 15 14 38 38 H 1.08000 * 119.95459 * 179.97438 * 25 24 15 39 39 H 1.08001 * 120.29907 * 180.02562 * 26 8 7 40 40 H 1.09005 * 109.47021 * 262.61156 * 28 27 26 41 41 H 1.09000 * 109.47382 * 22.61073 * 28 27 26 42 42 H 1.08997 * 109.47192 * 142.61358 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4020 2.2196 -0.0005 5 6 3.5364 1.2777 -0.0006 6 6 4.3066 0.1206 0.1352 7 7 5.6211 0.1883 0.1294 8 6 6.2577 1.3438 -0.0034 9 7 7.6457 1.3640 -0.0041 10 6 8.3365 0.2072 0.0193 11 8 7.7484 -0.8539 -0.0619 12 6 9.8069 0.2281 0.1437 13 6 10.4826 1.4516 0.2314 14 6 11.8400 1.4757 0.3522 15 6 12.5645 0.2675 0.3770 16 6 13.9702 0.2876 0.4955 17 1 14.5290 -0.6356 0.4519 18 6 14.6418 1.5062 0.6699 19 7 14.1203 2.4376 1.4230 20 14 16.2823 1.7978 -0.1747 21 1 16.0586 2.5111 -1.4578 22 1 17.1521 2.6205 0.7039 23 1 16.9403 0.4936 -0.4416 24 6 11.8808 -0.9609 0.2827 25 6 10.5226 -0.9754 0.1684 26 6 5.5536 2.5374 -0.1434 27 6 4.1844 2.5141 -0.1424 28 6 3.3918 3.7871 -0.2912 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5140 0.8899 32 1 3.8199 -0.8372 0.2455 33 1 8.1183 2.2109 -0.0216 34 1 9.9269 2.3774 0.2082 35 1 12.3600 2.4196 0.4238 36 1 14.5847 3.2806 1.5434 37 1 12.4320 -1.8895 0.3008 38 1 9.9977 -1.9165 0.0955 39 1 6.0828 3.4727 -0.2514 40 1 3.0870 4.1425 0.6931 41 1 4.0080 4.5442 -0.7761 42 1 2.5070 3.5954 -0.8982 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361982038.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:34 Heat of formation + Delta-G solvation = -55.927656 kcal Electronic energy + Delta-G solvation = -27437.359418 eV Core-core repulsion = 23347.614685 eV Total energy + Delta-G solvation = -4089.744733 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.11931 -40.13387 -38.77282 -37.22615 -36.65684 -34.68409 -34.16773 -33.74006 -31.13318 -30.06999 -29.51652 -28.37852 -27.48018 -26.21334 -24.24850 -23.16114 -21.95161 -21.19900 -20.89782 -19.65133 -18.25387 -17.81040 -17.68769 -17.12660 -16.59705 -16.48351 -15.74682 -15.50247 -14.97957 -14.77249 -14.38827 -14.15133 -14.00378 -13.96411 -13.41166 -13.19563 -13.08552 -12.93728 -12.83762 -12.62692 -12.45346 -12.31346 -12.29901 -12.09765 -11.42741 -11.26212 -11.13275 -10.99739 -10.85192 -10.52837 -10.48910 -10.30731 -9.74974 -9.69940 -9.65174 -9.17619 -8.72471 -8.27147 -7.91345 -7.75580 -7.38409 -4.69776 0.52250 1.22720 2.10839 2.45346 2.53401 2.76982 2.85865 2.89638 2.98321 3.16198 3.57229 3.57933 3.90237 4.35380 4.37405 4.54341 4.65796 4.83519 4.87306 4.93202 4.94396 5.25806 5.34824 5.46765 5.52562 5.54831 5.59149 5.81267 5.91473 5.94871 6.00479 6.23580 6.26919 6.34158 6.56596 6.71912 6.78634 6.97213 7.04033 7.28458 7.37618 7.59287 7.65434 7.74973 7.78879 7.90765 8.19260 8.24491 8.48330 8.65633 8.90431 9.50031 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.029393 B = 0.001982 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.364775 B =14125.835060 C =14943.499851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.356 6.356 3 C 0.522 3.478 4 O -0.512 6.512 5 C -0.246 4.246 6 C 0.206 3.794 7 N -0.489 5.489 8 C 0.419 3.581 9 N -0.659 5.659 10 C 0.558 3.442 11 O -0.503 6.503 12 C -0.307 4.307 13 C -0.055 4.055 14 C -0.207 4.207 15 C 0.119 3.881 16 C -0.428 4.428 17 H 0.091 0.909 18 C 0.083 3.917 19 N -0.732 5.732 20 Si 0.909 3.091 21 H -0.261 1.261 22 H -0.273 1.273 23 H -0.254 1.254 24 C -0.249 4.249 25 C -0.009 4.009 26 C -0.238 4.238 27 C 0.053 3.947 28 C -0.121 4.121 29 H 0.062 0.938 30 H 0.101 0.899 31 H 0.062 0.938 32 H 0.170 0.830 33 H 0.417 0.583 34 H 0.086 0.914 35 H 0.125 0.875 36 H 0.292 0.708 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.143 0.857 40 H 0.082 0.918 41 H 0.066 0.934 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.397 4.027 -2.363 16.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.273 6.273 3 C 0.368 3.632 4 O -0.402 6.402 5 C -0.252 4.252 6 C 0.044 3.956 7 N -0.204 5.204 8 C 0.186 3.814 9 N -0.303 5.303 10 C 0.354 3.646 11 O -0.378 6.378 12 C -0.312 4.312 13 C -0.074 4.074 14 C -0.226 4.226 15 C 0.116 3.884 16 C -0.453 4.453 17 H 0.110 0.890 18 C -0.144 4.144 19 N -0.352 5.352 20 Si 0.731 3.269 21 H -0.185 1.185 22 H -0.198 1.198 23 H -0.177 1.177 24 C -0.268 4.268 25 C -0.028 4.028 26 C -0.262 4.262 27 C 0.045 3.955 28 C -0.177 4.177 29 H 0.081 0.919 30 H 0.120 0.880 31 H 0.081 0.919 32 H 0.188 0.812 33 H 0.255 0.745 34 H 0.104 0.896 35 H 0.143 0.857 36 H 0.104 0.896 37 H 0.116 0.884 38 H 0.120 0.880 39 H 0.161 0.839 40 H 0.101 0.899 41 H 0.085 0.915 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -15.323 2.995 -2.178 15.764 hybrid contribution 0.293 1.556 -0.315 1.614 sum -15.030 4.551 -2.493 15.900 Atomic orbital electron populations 1.23250 0.76096 1.03707 1.02484 1.86561 1.23448 1.32782 1.84515 1.20862 0.88622 0.81296 0.72413 1.90778 1.66973 1.35545 1.46916 1.19758 0.90089 0.95839 1.19493 1.23165 0.88178 0.97536 0.86723 1.68002 1.09290 1.25576 1.17498 1.18927 0.85673 0.89487 0.87336 1.44005 1.02579 1.12237 1.71439 1.18921 0.88201 0.82162 0.75281 1.90755 1.70706 1.29244 1.47080 1.18649 0.88997 0.94832 1.28706 1.20405 0.95041 0.94249 0.97707 1.21097 0.92759 0.98843 1.09862 1.17726 0.92830 0.91421 0.86466 1.19977 0.92279 0.94085 1.38917 0.89049 1.26309 1.00649 0.95380 0.92075 1.69851 1.38254 1.05810 1.21276 0.86259 0.80049 0.80196 0.80372 1.18533 1.19760 1.17717 1.20534 0.93375 0.96752 1.16144 1.20308 0.93684 0.95621 0.93223 1.21062 0.93828 0.98404 1.12878 1.19787 0.92894 0.94436 0.88335 1.21083 1.00228 0.92673 1.03713 0.91933 0.88027 0.91895 0.81250 0.74482 0.89621 0.85744 0.89645 0.88391 0.88045 0.83923 0.89922 0.91487 0.88856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.57 101.05 1.07 1.35 16 2 O -0.36 -3.86 9.85 -40.62 -0.40 -4.26 16 3 C 0.52 6.51 7.84 34.49 0.27 6.78 16 4 O -0.51 -6.88 13.31 -19.27 -0.26 -7.13 16 5 C -0.25 -3.23 5.89 -104.83 -0.62 -3.85 16 6 C 0.21 2.95 10.79 -17.11 -0.18 2.76 16 7 N -0.49 -8.65 7.88 -12.07 -0.10 -8.74 16 8 C 0.42 6.77 7.40 -154.99 -1.15 5.62 16 9 N -0.66 -11.13 5.31 -12.39 -0.07 -11.20 16 10 C 0.56 11.77 7.71 -12.46 -0.10 11.67 16 11 O -0.50 -11.94 14.60 5.29 0.08 -11.87 16 12 C -0.31 -6.81 5.89 -104.73 -0.62 -7.43 16 13 C -0.05 -1.16 9.47 -39.60 -0.37 -1.54 16 14 C -0.21 -4.84 8.91 -39.27 -0.35 -5.19 16 15 C 0.12 2.90 5.72 -106.80 -0.61 2.29 16 16 C -0.43 -10.08 8.95 -37.75 -0.34 -10.42 16 17 H 0.09 2.07 8.05 -52.49 -0.42 1.64 16 18 C 0.08 1.81 4.90 -17.31 -0.08 1.72 16 19 N -0.73 -16.14 11.07 55.56 0.61 -15.52 16 20 Si 0.91 15.96 29.68 -169.99 -5.05 10.91 16 21 H -0.26 -4.58 7.11 56.52 0.40 -4.18 16 22 H -0.27 -4.64 7.11 56.52 0.40 -4.24 16 23 H -0.25 -4.45 7.11 56.52 0.40 -4.05 16 24 C -0.25 -5.83 9.73 -39.27 -0.38 -6.21 16 25 C -0.01 -0.21 9.52 -39.60 -0.38 -0.59 16 26 C -0.24 -3.01 9.52 -39.66 -0.38 -3.39 16 27 C 0.05 0.65 5.92 -104.31 -0.62 0.04 16 28 C -0.12 -1.22 8.79 36.00 0.32 -0.90 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.17 2.05 7.63 -52.49 -0.40 1.65 16 33 H 0.42 5.77 6.71 -40.82 -0.27 5.49 16 34 H 0.09 1.49 6.39 -52.49 -0.34 1.15 16 35 H 0.12 2.92 5.58 -52.48 -0.29 2.62 16 36 H 0.29 5.65 8.29 -40.82 -0.34 5.31 16 37 H 0.10 2.14 8.06 -52.49 -0.42 1.71 16 38 H 0.10 2.26 7.63 -52.49 -0.40 1.86 16 39 H 0.14 1.38 8.06 -52.49 -0.42 0.95 16 40 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 0.54 8.05 -51.93 -0.42 0.13 16 42 H 0.09 1.03 6.03 -51.93 -0.31 0.72 16 LS Contribution 363.55 15.07 5.48 5.48 Total: -1.00 -29.61 363.55 -8.74 -38.35 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -4.53 Total: 11.26 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: -4.52 Total: -7.27 kcal Atomic # 7 Polarization: -35.92 SS G_CDS: 0.45 Total: -35.47 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.58 Total: -23.26 kcal Atomic # 14 Polarization: 15.96 SS G_CDS: -5.05 Total: 10.91 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.61 -8.74 -38.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361982038.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.577 kcal (2) G-P(sol) polarization free energy of solvation -29.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds