Wall clock time and date at job start Sat Apr 11 2020 05:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34714 * 117.00038 * 2 1 4 4 O 1.21472 * 119.99874 * 359.97438 * 3 2 1 5 5 C 1.47734 * 120.00057 * 179.97438 * 3 2 1 6 6 C 1.39976 * 120.52979 * 6.92240 * 5 3 2 7 7 C 1.38996 * 118.22040 * 180.25403 * 6 5 3 8 8 N 1.39910 * 120.41734 * 179.73833 * 7 6 5 9 9 C 1.34770 * 120.00310 * 325.44201 * 8 7 6 10 10 O 1.21560 * 119.99980 * 4.85825 * 9 8 7 11 11 C 1.47856 * 120.00354 * 184.85446 * 9 8 7 12 12 C 1.39936 * 120.02116 * 359.96386 * 11 9 8 13 13 C 1.38330 * 120.35506 * 179.97438 * 12 11 9 14 14 C 1.37756 * 120.40902 * 0.04226 * 13 12 11 15 15 C 1.40745 * 120.04753 * 359.97438 * 14 13 12 16 16 C 1.41443 * 120.17838 * 180.02562 * 15 14 13 17 17 H 1.07995 * 119.99904 * 326.24063 * 16 15 14 18 18 C 1.39932 * 119.99758 * 146.23374 * 16 15 14 19 19 N 1.30833 * 120.00457 * 1.97497 * 18 16 15 20 20 Si 1.86800 * 120.00033 * 181.97362 * 18 16 15 21 21 H 1.48504 * 109.46767 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47291 * 119.99841 * 20 18 16 23 23 H 1.48500 * 109.47281 * 240.00371 * 20 18 16 24 24 C 1.39001 * 120.02984 * 180.02562 * 11 9 8 25 25 C 1.39008 * 119.15965 * 359.47362 * 7 6 5 26 26 N 1.31862 * 120.99282 * 0.24642 * 25 7 6 27 27 C 1.31682 * 121.96520 * 0.02562 * 26 25 7 28 28 C 1.50697 * 119.64353 * 179.97438 * 27 26 25 29 29 H 1.09000 * 109.47518 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47403 * 300.00319 * 1 2 3 31 31 H 1.08999 * 109.46875 * 60.00292 * 1 2 3 32 32 H 1.08000 * 120.88772 * 0.02562 * 6 5 3 33 33 H 0.96999 * 119.99829 * 145.44517 * 8 7 6 34 34 H 1.07997 * 119.82461 * 359.97438 * 12 11 9 35 35 H 1.07994 * 119.79596 * 180.02562 * 13 12 11 36 36 H 1.08003 * 119.97241 * 180.02562 * 14 13 12 37 37 H 0.96997 * 120.00429 * 179.97438 * 19 18 16 38 38 H 1.08006 * 120.20379 * 0.25795 * 24 11 9 39 39 H 1.08001 * 119.50385 * 180.26948 * 25 7 6 40 40 H 1.08996 * 109.47166 * 96.93127 * 28 27 26 41 41 H 1.08999 * 109.47213 * 216.92999 * 28 27 26 42 42 H 1.09002 * 109.46792 * 336.92776 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4019 2.2190 -0.0005 5 6 3.5389 1.2776 0.0006 6 6 4.3116 0.1195 -0.1442 7 6 5.6957 0.2471 -0.1315 8 7 6.5123 -0.8809 -0.2671 9 6 6.1263 -2.0596 0.2601 10 8 5.0306 -2.1650 0.7759 11 6 7.0355 -3.2245 0.2111 12 6 8.2966 -3.1039 -0.3833 13 6 9.1529 -4.1892 -0.4324 14 6 8.7741 -5.4010 0.1021 15 6 7.5095 -5.5415 0.7037 16 6 7.1180 -6.7844 1.2539 17 1 7.4491 -7.7053 0.7973 18 6 6.3017 -6.8205 2.3899 19 7 5.8690 -5.7056 2.9204 20 14 5.8299 -8.4608 3.1491 21 1 6.4442 -9.5633 2.3667 22 1 6.3188 -8.5167 4.5502 23 1 4.3521 -8.6063 3.1343 24 6 6.6378 -4.4407 0.7543 25 6 6.2582 1.5102 0.0120 26 7 5.4993 2.5808 0.1402 27 6 4.1845 2.5076 0.1393 28 6 3.3678 3.7651 0.2901 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 3.8450 -0.8476 -0.2589 33 1 7.3562 -0.8145 -0.7406 34 1 8.6030 -2.1585 -0.8059 35 1 10.1242 -4.0859 -0.8929 36 1 9.4485 -6.2436 0.0602 37 1 5.3029 -5.7307 3.7076 38 1 5.6633 -4.5397 1.2094 39 1 7.3329 1.6162 0.0182 40 1 3.0609 4.1191 -0.6940 41 1 2.4840 3.5543 0.8923 42 1 3.9678 4.5312 0.7811 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361995158.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:40 Heat of formation + Delta-G solvation = -58.529488 kcal Electronic energy + Delta-G solvation = -28170.890692 eV Core-core repulsion = 24081.033135 eV Total energy + Delta-G solvation = -4089.857557 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.20856 -40.16153 -39.10377 -37.27245 -36.63026 -35.01894 -33.77978 -32.76466 -31.87165 -30.18583 -29.57053 -28.16146 -27.10076 -25.40088 -24.83670 -23.37934 -22.24392 -21.26833 -20.90851 -19.80416 -18.57883 -17.77298 -17.35556 -16.64865 -16.52009 -16.36681 -15.86643 -15.78682 -15.24468 -14.85228 -14.59005 -14.24773 -14.08513 -13.76295 -13.35499 -13.33219 -13.23271 -12.82715 -12.71254 -12.67080 -12.50564 -12.23667 -12.09907 -11.79024 -11.22718 -11.21976 -10.92293 -10.83909 -10.71529 -10.58671 -10.53899 -10.17142 -9.90230 -9.84376 -9.78074 -9.38224 -9.13954 -8.28491 -7.78945 -7.54539 -6.75479 -4.55585 0.37293 1.06926 1.97196 2.37212 2.54181 2.70910 3.03529 3.05448 3.09427 3.16179 3.48320 3.73215 3.88837 4.17495 4.44176 4.56895 4.65426 4.75998 4.96750 4.98577 5.05248 5.16756 5.40128 5.42033 5.44778 5.61436 5.67625 5.70365 5.88808 5.94908 6.06500 6.08675 6.12176 6.36272 6.55497 6.70212 6.81902 6.88465 7.14423 7.23614 7.46970 7.53801 7.58125 7.71016 7.72088 7.88041 8.06838 8.40188 8.53043 8.71443 8.75659 10.15786 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012673 B = 0.002943 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.849635 B = 9513.374181 C =11243.241204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.347 6.347 3 C 0.518 3.482 4 O -0.502 6.502 5 C -0.166 4.166 6 C -0.023 4.023 7 C 0.094 3.906 8 N -0.673 5.673 9 C 0.565 3.435 10 O -0.520 6.520 11 C -0.137 4.137 12 C -0.206 4.206 13 C -0.104 4.104 14 C -0.196 4.196 15 C 0.093 3.907 16 C -0.461 4.461 17 H 0.081 0.919 18 C 0.068 3.932 19 N -0.801 5.801 20 Si 0.917 3.083 21 H -0.261 1.261 22 H -0.273 1.273 23 H -0.272 1.272 24 C -0.075 4.075 25 C 0.110 3.890 26 N -0.470 5.470 27 C 0.167 3.833 28 C -0.106 4.106 29 H 0.104 0.896 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.168 0.832 33 H 0.415 0.585 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.282 0.718 38 H 0.145 0.855 39 H 0.166 0.834 40 H 0.082 0.918 41 H 0.096 0.904 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.081 11.694 -5.543 13.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.263 6.263 3 C 0.363 3.637 4 O -0.392 6.392 5 C -0.170 4.170 6 C -0.051 4.051 7 C -0.004 4.004 8 N -0.320 5.320 9 C 0.358 3.642 10 O -0.396 6.396 11 C -0.140 4.140 12 C -0.226 4.226 13 C -0.122 4.122 14 C -0.216 4.216 15 C 0.091 3.909 16 C -0.491 4.491 17 H 0.099 0.901 18 C -0.148 4.148 19 N -0.427 5.427 20 Si 0.742 3.258 21 H -0.185 1.185 22 H -0.199 1.199 23 H -0.198 1.198 24 C -0.095 4.095 25 C -0.050 4.050 26 N -0.179 5.179 27 C 0.028 3.972 28 C -0.163 4.163 29 H 0.122 0.878 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.185 0.815 33 H 0.253 0.747 34 H 0.110 0.890 35 H 0.114 0.886 36 H 0.117 0.883 37 H 0.094 0.906 38 H 0.162 0.838 39 H 0.183 0.817 40 H 0.100 0.900 41 H 0.114 0.886 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.819 12.701 -4.853 14.425 hybrid contribution -0.121 -1.509 0.163 1.522 sum -4.940 11.192 -4.690 13.102 Atomic orbital electron populations 1.23310 0.75780 1.04059 1.02461 1.86636 1.23657 1.32148 1.83832 1.20874 0.88571 0.81595 0.72649 1.90777 1.66797 1.35464 1.46143 1.19846 0.90479 0.95056 1.11658 1.22203 0.92234 0.99605 0.91039 1.18758 0.91076 0.88632 1.01954 1.43573 1.23668 1.07672 1.57093 1.19111 0.86920 0.82304 0.75880 1.90725 1.21845 1.83386 1.43597 1.19368 0.94748 0.93317 1.06613 1.20406 0.95416 0.97888 1.08894 1.20469 0.97817 0.93601 1.00335 1.21289 0.96615 0.96557 1.07110 1.17664 0.89877 0.93458 0.89900 1.19591 1.26516 0.93379 1.09618 0.90130 1.25942 0.93694 0.98328 0.96881 1.69713 1.26221 1.27778 1.18954 0.86106 0.78925 0.81583 0.79190 1.18501 1.19870 1.19771 1.21925 1.00851 0.90352 0.96383 1.22913 1.00627 0.86601 0.94859 1.67650 1.05114 1.31155 1.13994 1.21386 0.89863 0.93874 0.92089 1.20990 0.98981 0.92581 1.03711 0.87782 0.91745 0.91807 0.81457 0.74732 0.89030 0.88559 0.88291 0.90634 0.83773 0.81672 0.89992 0.88572 0.90951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.56 101.05 1.07 1.44 16 2 O -0.35 -4.82 9.91 -40.53 -0.40 -5.22 16 3 C 0.52 7.43 7.82 34.61 0.27 7.70 16 4 O -0.50 -7.24 13.17 -19.24 -0.25 -7.49 16 5 C -0.17 -2.44 5.89 -104.86 -0.62 -3.05 16 6 C -0.02 -0.36 8.37 -38.65 -0.32 -0.69 16 7 C 0.09 1.37 6.32 -83.60 -0.53 0.84 16 8 N -0.67 -10.12 5.29 -10.65 -0.06 -10.18 16 9 C 0.57 11.22 7.63 -12.33 -0.09 11.12 16 10 O -0.52 -11.80 13.77 5.31 0.07 -11.73 16 11 C -0.14 -2.96 5.87 -105.04 -0.62 -3.58 16 12 C -0.21 -3.90 9.55 -38.91 -0.37 -4.27 16 13 C -0.10 -2.03 10.01 -39.72 -0.40 -2.43 16 14 C -0.20 -4.34 9.78 -38.81 -0.38 -4.72 16 15 C 0.09 2.34 5.55 -106.87 -0.59 1.74 16 16 C -0.46 -11.62 9.05 -37.73 -0.34 -11.96 16 17 H 0.08 1.93 7.85 -52.49 -0.41 1.52 16 18 C 0.07 1.67 5.40 -17.34 -0.09 1.58 16 19 N -0.80 -20.57 10.62 55.55 0.59 -19.98 16 20 Si 0.92 18.36 29.56 -169.99 -5.02 13.33 16 21 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 22 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 23 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 24 C -0.07 -1.87 8.20 -38.44 -0.32 -2.19 16 25 C 0.11 1.38 11.11 -17.25 -0.19 1.19 16 26 N -0.47 -6.37 10.25 -8.98 -0.09 -6.46 16 27 C 0.17 2.29 6.82 -82.15 -0.56 1.73 16 28 C -0.11 -1.21 8.84 36.00 0.32 -0.89 16 29 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.17 2.93 5.93 -52.49 -0.31 2.62 16 33 H 0.41 4.95 6.85 -40.82 -0.28 4.67 16 34 H 0.09 1.36 6.39 -52.49 -0.34 1.02 16 35 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 36 H 0.10 2.04 8.06 -52.48 -0.42 1.62 16 37 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 38 H 0.14 3.94 5.74 -52.48 -0.30 3.64 16 39 H 0.17 1.54 8.06 -52.49 -0.42 1.12 16 40 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.10 1.16 5.88 -51.93 -0.31 0.85 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 362.50 15.07 5.46 5.46 Total: -1.00 -29.50 362.50 -7.93 -37.43 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -4.46 Total: 11.28 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -3.77 Total: -6.44 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 0.44 Total: -36.62 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: -0.58 Total: -24.45 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.02 Total: 13.33 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.50 -7.93 -37.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361995158.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.098 kcal (2) G-P(sol) polarization free energy of solvation -29.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds