Wall clock time and date at job start Sat Apr 11 2020 05:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34714 * 117.00038 * 2 1 4 4 O 1.21472 * 119.99874 * 359.97438 * 3 2 1 5 5 C 1.47734 * 120.00057 * 179.97438 * 3 2 1 6 6 C 1.39976 * 120.52979 * 6.92240 * 5 3 2 7 7 C 1.38996 * 118.22040 * 180.25403 * 6 5 3 8 8 N 1.39910 * 120.41734 * 179.73833 * 7 6 5 9 9 C 1.34770 * 120.00310 * 325.44201 * 8 7 6 10 10 O 1.21560 * 119.99980 * 4.85825 * 9 8 7 11 11 C 1.47856 * 120.00354 * 184.85446 * 9 8 7 12 12 C 1.39936 * 120.02116 * 359.96386 * 11 9 8 13 13 C 1.38330 * 120.35506 * 179.97438 * 12 11 9 14 14 C 1.37756 * 120.40902 * 0.04226 * 13 12 11 15 15 C 1.40745 * 120.04753 * 359.97438 * 14 13 12 16 16 C 1.41443 * 120.17838 * 180.02562 * 15 14 13 17 17 H 1.07995 * 119.99904 * 326.24063 * 16 15 14 18 18 C 1.39932 * 119.99758 * 146.23374 * 16 15 14 19 19 N 1.30833 * 120.00457 * 1.97497 * 18 16 15 20 20 Si 1.86800 * 120.00033 * 181.97362 * 18 16 15 21 21 H 1.48504 * 109.46767 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47291 * 119.99841 * 20 18 16 23 23 H 1.48500 * 109.47281 * 240.00371 * 20 18 16 24 24 C 1.39001 * 120.02984 * 180.02562 * 11 9 8 25 25 C 1.39008 * 119.15965 * 359.47362 * 7 6 5 26 26 N 1.31862 * 120.99282 * 0.24642 * 25 7 6 27 27 C 1.31682 * 121.96520 * 0.02562 * 26 25 7 28 28 C 1.50697 * 119.64353 * 179.97438 * 27 26 25 29 29 H 1.09000 * 109.47518 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47403 * 300.00319 * 1 2 3 31 31 H 1.08999 * 109.46875 * 60.00292 * 1 2 3 32 32 H 1.08000 * 120.88772 * 0.02562 * 6 5 3 33 33 H 0.96999 * 119.99829 * 145.44517 * 8 7 6 34 34 H 1.07997 * 119.82461 * 359.97438 * 12 11 9 35 35 H 1.07994 * 119.79596 * 180.02562 * 13 12 11 36 36 H 1.08003 * 119.97241 * 180.02562 * 14 13 12 37 37 H 0.96997 * 120.00429 * 179.97438 * 19 18 16 38 38 H 1.08006 * 120.20379 * 0.25795 * 24 11 9 39 39 H 1.08001 * 119.50385 * 180.26948 * 25 7 6 40 40 H 1.08996 * 109.47166 * 96.93127 * 28 27 26 41 41 H 1.08999 * 109.47213 * 216.92999 * 28 27 26 42 42 H 1.09002 * 109.46792 * 336.92776 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4019 2.2190 -0.0005 5 6 3.5389 1.2776 0.0006 6 6 4.3116 0.1195 -0.1442 7 6 5.6957 0.2471 -0.1315 8 7 6.5123 -0.8809 -0.2671 9 6 6.1263 -2.0596 0.2601 10 8 5.0306 -2.1650 0.7759 11 6 7.0355 -3.2245 0.2111 12 6 8.2966 -3.1039 -0.3833 13 6 9.1529 -4.1892 -0.4324 14 6 8.7741 -5.4010 0.1021 15 6 7.5095 -5.5415 0.7037 16 6 7.1180 -6.7844 1.2539 17 1 7.4491 -7.7053 0.7973 18 6 6.3017 -6.8205 2.3899 19 7 5.8690 -5.7056 2.9204 20 14 5.8299 -8.4608 3.1491 21 1 6.4442 -9.5633 2.3667 22 1 6.3188 -8.5167 4.5502 23 1 4.3521 -8.6063 3.1343 24 6 6.6378 -4.4407 0.7543 25 6 6.2582 1.5102 0.0120 26 7 5.4993 2.5808 0.1402 27 6 4.1845 2.5076 0.1393 28 6 3.3678 3.7651 0.2901 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 3.8450 -0.8476 -0.2589 33 1 7.3562 -0.8145 -0.7406 34 1 8.6030 -2.1585 -0.8059 35 1 10.1242 -4.0859 -0.8929 36 1 9.4485 -6.2436 0.0602 37 1 5.3029 -5.7307 3.7076 38 1 5.6633 -4.5397 1.2094 39 1 7.3329 1.6162 0.0182 40 1 3.0609 4.1191 -0.6940 41 1 2.4840 3.5543 0.8923 42 1 3.9678 4.5312 0.7811 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361995158.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:40 Heat of formation + Delta-G solvation = -75.580147 kcal Electronic energy + Delta-G solvation = -28171.630064 eV Core-core repulsion = 24081.033135 eV Total energy + Delta-G solvation = -4090.596929 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.35485 -41.40402 -40.41344 -38.91144 -37.71815 -36.38855 -35.52263 -33.86599 -33.13237 -31.74223 -31.27057 -29.14612 -28.16108 -27.15502 -25.91194 -24.82139 -23.42450 -22.82996 -22.23843 -21.29693 -19.91790 -19.26577 -18.47990 -18.02862 -17.60144 -17.41297 -17.22461 -17.15192 -16.76184 -16.43113 -15.93018 -15.57139 -15.48890 -15.02831 -14.78661 -14.58888 -14.38764 -14.28310 -14.24504 -13.71555 -13.58556 -13.46108 -13.17321 -12.99719 -12.87341 -12.84373 -12.51546 -12.20068 -11.96903 -11.91174 -11.86878 -11.65347 -11.52677 -11.18735 -11.08720 -11.00671 -10.53873 -9.63658 -9.33012 -9.28882 -8.53285 -6.43229 -0.71257 -0.14138 0.36407 1.01704 1.26940 1.38083 1.45149 1.53111 1.55692 1.84619 1.98911 2.21752 2.54691 2.81965 3.18105 3.36272 3.56205 3.64505 3.65673 3.81116 4.04134 4.16184 4.22445 4.28490 4.42031 4.56578 4.62528 4.63962 4.69274 4.74000 4.85046 4.92086 4.97984 5.06268 5.09443 5.16704 5.32931 5.35368 5.51441 5.55039 5.83287 5.87781 6.08587 6.26917 6.36409 6.51212 6.61453 6.63899 6.91470 6.94700 7.07606 8.39067 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012673 B = 0.002943 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.849635 B = 9513.374181 C =11243.241204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.367 6.367 3 C 0.516 3.484 4 O -0.506 6.506 5 C -0.180 4.180 6 C -0.036 4.036 7 C 0.076 3.924 8 N -0.648 5.648 9 C 0.565 3.435 10 O -0.559 6.559 11 C -0.145 4.145 12 C -0.178 4.178 13 C -0.103 4.103 14 C -0.199 4.199 15 C 0.059 3.941 16 C -0.498 4.498 17 H 0.080 0.920 18 C 0.024 3.976 19 N -0.843 5.843 20 Si 0.986 3.014 21 H -0.253 1.253 22 H -0.269 1.269 23 H -0.271 1.271 24 C -0.112 4.112 25 C 0.133 3.867 26 N -0.474 5.474 27 C 0.170 3.830 28 C -0.102 4.102 29 H 0.123 0.877 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.142 0.858 33 H 0.432 0.568 34 H 0.146 0.854 35 H 0.143 0.857 36 H 0.110 0.890 37 H 0.282 0.718 38 H 0.107 0.893 39 H 0.208 0.792 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.964 13.705 -6.765 15.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.283 6.283 3 C 0.362 3.638 4 O -0.397 6.397 5 C -0.184 4.184 6 C -0.064 4.064 7 C -0.021 4.021 8 N -0.296 5.296 9 C 0.357 3.643 10 O -0.437 6.437 11 C -0.149 4.149 12 C -0.198 4.198 13 C -0.121 4.121 14 C -0.218 4.218 15 C 0.057 3.943 16 C -0.529 4.529 17 H 0.099 0.901 18 C -0.188 4.188 19 N -0.470 5.470 20 Si 0.807 3.193 21 H -0.176 1.176 22 H -0.193 1.193 23 H -0.196 1.196 24 C -0.133 4.133 25 C -0.027 4.027 26 N -0.183 5.183 27 C 0.032 3.968 28 C -0.158 4.158 29 H 0.141 0.859 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.160 0.840 33 H 0.274 0.726 34 H 0.164 0.836 35 H 0.161 0.839 36 H 0.128 0.872 37 H 0.092 0.908 38 H 0.125 0.875 39 H 0.224 0.776 40 H 0.111 0.889 41 H 0.107 0.893 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.679 14.750 -6.116 16.191 hybrid contribution -0.716 -1.919 0.391 2.086 sum -3.395 12.830 -5.725 14.454 Atomic orbital electron populations 1.23616 0.73755 1.05680 1.03274 1.86627 1.25835 1.32168 1.83659 1.20884 0.88645 0.81687 0.72620 1.90761 1.66925 1.35464 1.46569 1.19943 0.90751 0.95195 1.12497 1.22063 0.93299 0.99008 0.91990 1.18860 0.90507 0.89141 1.03604 1.43130 1.24125 1.06321 1.56035 1.18918 0.86148 0.83285 0.75983 1.90721 1.23366 1.84165 1.45490 1.19620 0.96328 0.92838 1.06088 1.21002 0.93272 0.99964 1.05552 1.20979 0.99681 0.92289 0.99185 1.21591 0.95666 0.98420 1.06170 1.17983 0.91358 0.93707 0.91271 1.19836 1.28410 0.93758 1.10859 0.90139 1.26789 0.93338 1.01648 0.97055 1.69858 1.27677 1.29823 1.19674 0.85084 0.78431 0.77420 0.78318 1.17630 1.19342 1.19634 1.21681 1.00045 0.92482 0.99108 1.23481 1.02323 0.85033 0.91848 1.67797 1.04936 1.31236 1.14366 1.21767 0.90310 0.94164 0.90603 1.21010 0.98603 0.91918 1.04305 0.85885 0.91188 0.90722 0.84017 0.72622 0.83630 0.83932 0.87179 0.90780 0.87464 0.77565 0.88942 0.89294 0.89359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.56 113.37 1.20 1.78 16 2 O -0.37 -10.55 9.91 -56.24 -0.56 -11.11 16 3 C 0.52 14.98 7.82 70.33 0.55 15.53 16 4 O -0.51 -14.45 13.17 19.93 0.26 -14.19 16 5 C -0.18 -5.24 5.89 -20.02 -0.12 -5.36 16 6 C -0.04 -1.14 8.37 22.87 0.19 -0.95 16 7 C 0.08 2.09 6.32 38.22 0.24 2.33 16 8 N -0.65 -18.06 5.29 -305.87 -1.62 -19.68 16 9 C 0.56 22.45 7.63 86.79 0.66 23.11 16 10 O -0.56 -26.68 13.77 -3.90 -0.05 -26.74 16 11 C -0.15 -6.25 5.87 -20.14 -0.12 -6.37 16 12 C -0.18 -6.10 9.55 22.70 0.22 -5.88 16 13 C -0.10 -3.66 10.01 22.18 0.22 -3.44 16 14 C -0.20 -8.64 9.78 22.77 0.22 -8.42 16 15 C 0.06 3.05 5.55 -21.32 -0.12 2.93 16 16 C -0.50 -26.37 9.05 23.47 0.21 -26.16 16 17 H 0.08 4.05 7.85 -2.91 -0.02 4.02 16 18 C 0.02 1.21 5.40 85.25 0.46 1.67 16 19 N -0.84 -46.30 10.62 21.82 0.23 -46.07 16 20 Si 0.99 39.30 29.56 68.60 2.03 41.33 16 21 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 22 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 23 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 24 C -0.11 -5.90 8.20 23.01 0.19 -5.71 16 25 C 0.13 2.89 11.11 84.87 0.94 3.83 16 26 N -0.47 -11.46 10.25 -182.32 -1.87 -13.33 16 27 C 0.17 4.37 6.82 42.91 0.29 4.66 16 28 C -0.10 -2.13 8.84 71.23 0.63 -1.50 16 29 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.14 5.28 5.93 -2.91 -0.02 5.26 16 33 H 0.43 8.43 6.85 -92.71 -0.64 7.80 16 34 H 0.15 3.37 6.39 -2.91 -0.02 3.35 16 35 H 0.14 3.79 8.06 -2.91 -0.02 3.76 16 36 H 0.11 4.42 8.06 -2.91 -0.02 4.40 16 37 H 0.28 14.38 8.30 -92.71 -0.77 13.61 16 38 H 0.11 6.39 5.74 -2.91 -0.02 6.37 16 39 H 0.21 2.69 8.06 -2.91 -0.02 2.67 16 40 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.09 2.04 5.88 -2.39 -0.01 2.02 16 42 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -69.97 362.50 4.76 -65.21 By element: Atomic # 1 Polarization: 32.08 SS G_CDS: 0.46 Total: 32.54 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: 5.88 Total: -7.96 kcal Atomic # 7 Polarization: -75.83 SS G_CDS: -3.26 Total: -79.09 kcal Atomic # 8 Polarization: -51.69 SS G_CDS: -0.35 Total: -52.03 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 2.03 Total: 41.33 kcal Total: -69.97 4.76 -65.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361995158.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.368 kcal (2) G-P(sol) polarization free energy of solvation -69.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds