Wall clock time and date at job start Sat Apr 11 2020 05:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30625 * 1 3 3 Si 1.86797 * 120.00181 * 2 1 4 4 H 1.48497 * 109.47360 * 239.99698 * 3 2 1 5 5 H 1.48495 * 109.47154 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.47041 * 119.99943 * 3 2 1 7 7 C 1.40283 * 119.99942 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00118 * 189.13637 * 7 2 1 9 9 C 1.40871 * 119.99629 * 9.14557 * 7 2 1 10 10 C 1.40707 * 120.33241 * 33.15171 * 9 7 2 11 11 C 1.37587 * 119.88120 * 180.02562 * 10 9 7 12 12 C 1.38837 * 120.57557 * 359.97438 * 11 10 9 13 13 C 1.38199 * 120.68473 * 0.02562 * 12 11 10 14 14 C 1.39254 * 120.08727 * 0.02562 * 13 12 11 15 15 C 1.47381 * 120.28325 * 179.97438 * 14 13 12 16 16 O 1.21634 * 119.99551 * 185.60167 * 15 14 13 17 17 N 1.34772 * 120.00080 * 5.60652 * 15 14 13 18 18 C 1.39987 * 119.99846 * 175.21801 * 17 15 14 19 19 C 1.38889 * 120.01399 * 215.23609 * 18 17 15 20 20 C 1.38077 * 119.97921 * 179.74564 * 19 18 17 21 21 C 1.38734 * 120.01700 * 0.49742 * 20 19 18 22 22 O 1.35963 * 119.98179 * 179.74847 * 21 20 19 23 23 C 1.42906 * 117.00207 * 0.02614 * 22 21 20 24 24 C 1.50689 * 109.47460 * 179.97438 * 23 22 21 25 25 N 1.34781 * 120.00350 * 179.97438 * 24 23 22 26 26 O 1.21287 * 119.99933 * 0.02562 * 24 23 22 27 27 C 1.38728 * 120.03859 * 359.77555 * 21 20 19 28 28 C 1.38079 * 120.01609 * 359.97346 * 27 21 20 29 29 H 0.96998 * 119.99657 * 0.02562 * 1 2 3 30 30 H 1.08001 * 120.06135 * 359.97438 * 10 9 7 31 31 H 1.08003 * 119.71015 * 179.97438 * 11 10 9 32 32 H 1.08002 * 119.65591 * 179.74581 * 12 11 10 33 33 H 1.07991 * 119.95847 * 179.97438 * 13 12 11 34 34 H 0.96995 * 120.00008 * 355.20996 * 17 15 14 35 35 H 1.08001 * 120.00803 * 359.97438 * 19 18 17 36 36 H 1.08000 * 119.99115 * 180.23085 * 20 19 18 37 37 H 1.09005 * 109.46616 * 300.00184 * 23 22 21 38 38 H 1.09007 * 109.46665 * 59.99445 * 23 22 21 39 39 H 0.97002 * 119.99243 * 0.02562 * 25 24 23 40 40 H 0.96995 * 120.00114 * 179.97438 * 25 24 23 41 41 H 1.07997 * 119.99726 * 179.97438 * 27 21 20 42 42 H 1.08010 * 120.01029 * 179.97438 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.0941 1.6963 -1.2124 5 1 1.2754 2.7464 -0.0006 6 1 3.0941 1.6963 1.2126 7 6 2.0076 -1.2149 0.0005 8 1 3.0774 -1.2208 0.1491 9 6 1.3166 -2.4272 -0.1928 10 6 0.1846 -2.4745 -1.0271 11 6 -0.4836 -3.6634 -1.2090 12 6 -0.0507 -4.8208 -0.5761 13 6 1.0583 -4.8012 0.2483 14 6 1.7550 -3.6130 0.4531 15 6 2.9379 -3.5871 1.3318 16 8 3.4817 -2.5298 1.5884 17 7 3.4170 -4.7348 1.8510 18 6 4.5976 -4.7236 2.6032 19 6 5.4775 -5.7958 2.5310 20 6 6.6443 -5.7816 3.2692 21 6 6.9327 -4.7015 4.0907 22 8 8.0794 -4.6906 4.8213 23 6 8.9407 -5.8238 4.6937 24 6 10.1522 -5.6351 5.5697 25 7 11.1082 -6.5842 5.6114 26 8 10.2667 -4.6294 6.2380 27 6 6.0516 -3.6327 4.1677 28 6 4.8869 -3.6430 3.4262 29 1 -0.4849 0.8401 -0.0004 30 1 -0.1597 -1.5791 -1.5232 31 1 -1.3525 -3.6965 -1.8496 32 1 -0.5889 -5.7452 -0.7261 33 1 1.3845 -5.7084 0.7350 34 1 2.9438 -5.5685 1.7036 35 1 5.2509 -6.6386 1.8949 36 1 7.3304 -6.6135 3.2104 37 1 8.4062 -6.7228 5.0008 38 1 9.2559 -5.9254 3.6551 39 1 11.0165 -7.3887 5.0772 40 1 11.8882 -6.4626 6.1750 41 1 6.2766 -2.7925 4.8078 42 1 4.2007 -2.8110 3.4865 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362073875.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:43 Heat of formation + Delta-G solvation = -55.700079 kcal Electronic energy + Delta-G solvation = -27641.539937 eV Core-core repulsion = 23551.805072 eV Total energy + Delta-G solvation = -4089.734865 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.53317 -39.77534 -38.90794 -37.46923 -36.40437 -34.15748 -34.10077 -33.47394 -30.97985 -30.32503 -29.77116 -29.06641 -27.61651 -25.47685 -23.14888 -22.86268 -21.70305 -21.12459 -20.72419 -19.44105 -18.47519 -17.96186 -17.84024 -16.95194 -16.59021 -16.56539 -16.24561 -15.49128 -15.28947 -14.54970 -14.42368 -14.35659 -14.19842 -14.08359 -13.74735 -13.30038 -13.01131 -12.89213 -12.74893 -12.60202 -12.45092 -12.16138 -11.70652 -11.35678 -11.14605 -11.04344 -10.90374 -10.76911 -10.56598 -10.30797 -10.18124 -10.13176 -9.76747 -9.48333 -9.30851 -8.88937 -8.44207 -7.71836 -7.47633 -7.37183 -6.87075 -4.46818 1.48208 1.53549 2.16682 2.28760 2.46409 2.77206 3.07247 3.13109 3.22336 3.57195 3.76737 3.82014 3.93290 4.16114 4.35038 4.60669 4.61392 4.69058 4.91250 4.94346 5.41919 5.52743 5.55985 5.76654 5.89958 5.96194 6.10760 6.16438 6.22996 6.29205 6.36591 6.48363 6.69375 6.75644 6.81205 6.88814 7.04346 7.12768 7.21435 7.38645 7.47119 7.54867 7.79419 7.81088 7.90001 8.09881 8.19528 8.57975 8.74275 8.81152 9.21070 10.07033 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015227 B = 0.002457 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.407763 B =11392.704213 C =13009.115410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.069 3.931 3 Si 0.918 3.082 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.260 1.260 7 C -0.413 4.413 8 H 0.107 0.893 9 C 0.146 3.854 10 C -0.146 4.146 11 C -0.095 4.095 12 C -0.244 4.244 13 C -0.056 4.056 14 C -0.267 4.267 15 C 0.562 3.438 16 O -0.520 6.520 17 N -0.688 5.688 18 C 0.138 3.862 19 C -0.120 4.120 20 C -0.191 4.191 21 C 0.094 3.906 22 O -0.293 6.293 23 C 0.041 3.959 24 C 0.519 3.481 25 N -0.853 5.853 26 O -0.517 6.517 27 C -0.124 4.124 28 C -0.084 4.084 29 H 0.284 0.716 30 H 0.120 0.880 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.402 0.598 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.403 0.597 40 H 0.407 0.593 41 H 0.132 0.868 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.158 -14.380 5.290 20.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.150 4.150 3 Si 0.742 3.258 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.184 1.184 7 C -0.440 4.440 8 H 0.125 0.875 9 C 0.141 3.859 10 C -0.165 4.165 11 C -0.114 4.114 12 C -0.264 4.264 13 C -0.075 4.075 14 C -0.272 4.272 15 C 0.359 3.641 16 O -0.397 6.397 17 N -0.335 5.335 18 C 0.043 3.957 19 C -0.141 4.141 20 C -0.210 4.210 21 C 0.049 3.951 22 O -0.206 6.206 23 C -0.038 4.038 24 C 0.302 3.698 25 N -0.420 5.420 26 O -0.391 6.391 27 C -0.143 4.143 28 C -0.104 4.104 29 H 0.095 0.905 30 H 0.137 0.863 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.107 0.893 34 H 0.238 0.762 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.231 0.769 40 H 0.239 0.761 41 H 0.150 0.850 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 13.231 -12.521 5.922 19.155 hybrid contribution 0.248 -0.515 -0.267 0.631 sum 13.479 -13.036 5.654 19.586 Atomic orbital electron populations 1.69701 1.07817 1.29901 1.33844 1.26161 0.94823 1.01941 0.92059 0.86189 0.79997 0.79176 0.80474 1.18696 1.20394 1.18422 1.20216 0.97460 0.89453 1.36902 0.87540 1.17458 0.90121 0.91212 0.87093 1.21393 0.98203 0.96464 1.00419 1.20819 0.98221 0.93522 0.98848 1.20281 1.01418 0.97382 1.07306 1.20629 0.95143 0.95014 0.96694 1.19292 1.02134 0.96319 1.09443 1.18583 0.84177 0.82113 0.79261 1.90677 1.59506 1.29361 1.60147 1.43750 1.24220 1.12151 1.53352 1.17786 0.88471 0.95863 0.93600 1.20664 0.93305 0.99272 1.00858 1.20855 0.99532 0.98890 1.01719 1.18908 0.86683 0.95621 0.93936 1.86147 1.30060 1.40497 1.63943 1.22353 0.90590 0.90566 1.00314 1.20165 0.83981 0.83266 0.82354 1.43665 1.24679 1.22984 1.50629 1.90819 1.77753 1.28027 1.42498 1.20359 0.93755 0.97787 1.02436 1.21323 0.97110 0.99081 0.92895 0.90485 0.86254 0.88994 0.89017 0.89273 0.76153 0.85670 0.85748 0.89016 0.88993 0.76897 0.76091 0.85013 0.83102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.92 11.06 55.56 0.61 -19.31 16 2 C 0.07 1.74 5.26 -17.30 -0.09 1.65 16 3 Si 0.92 19.34 29.57 -169.99 -5.03 14.32 16 4 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.28 -5.62 7.11 56.52 0.40 -5.21 16 6 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.41 -11.02 7.72 -37.82 -0.29 -11.31 16 8 H 0.11 2.94 5.86 -52.49 -0.31 2.63 16 9 C 0.15 3.79 5.52 -106.54 -0.59 3.20 16 10 C -0.15 -3.59 8.63 -38.89 -0.34 -3.93 16 11 C -0.10 -2.08 10.01 -39.60 -0.40 -2.48 16 12 C -0.24 -5.00 10.03 -39.37 -0.39 -5.40 16 13 C -0.06 -1.14 9.53 -39.22 -0.37 -1.52 16 14 C -0.27 -6.28 5.92 -104.37 -0.62 -6.90 16 15 C 0.56 12.54 7.56 -12.54 -0.09 12.44 16 16 O -0.52 -13.02 11.02 5.25 0.06 -12.96 16 17 N -0.69 -12.06 5.29 -10.81 -0.06 -12.12 16 18 C 0.14 2.28 6.29 -83.65 -0.53 1.76 16 19 C -0.12 -1.58 9.96 -39.40 -0.39 -1.97 16 20 C -0.19 -2.25 9.03 -39.46 -0.36 -2.61 16 21 C 0.09 1.30 6.69 -39.22 -0.26 1.04 16 22 O -0.29 -3.96 9.67 -39.53 -0.38 -4.35 16 23 C 0.04 0.34 5.22 36.00 0.19 0.53 16 24 C 0.52 4.86 8.18 -10.99 -0.09 4.77 16 25 N -0.85 -3.62 8.87 31.22 0.28 -3.34 16 26 O -0.52 -7.72 17.34 -14.36 -0.25 -7.96 16 27 C -0.12 -1.94 9.98 -39.46 -0.39 -2.34 16 28 C -0.08 -1.47 8.69 -39.40 -0.34 -1.81 16 29 H 0.28 6.55 8.29 -40.82 -0.34 6.21 16 30 H 0.12 3.01 6.51 -52.49 -0.34 2.67 16 31 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 32 H 0.09 1.62 8.06 -52.49 -0.42 1.19 16 33 H 0.09 1.47 6.42 -52.49 -0.34 1.13 16 34 H 0.40 5.86 6.87 -40.82 -0.28 5.58 16 35 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 36 H 0.12 1.00 6.29 -52.49 -0.33 0.67 16 37 H 0.09 0.52 7.66 -51.93 -0.40 0.12 16 38 H 0.09 0.55 7.66 -51.93 -0.40 0.15 16 39 H 0.40 0.29 8.83 -40.82 -0.36 -0.07 16 40 H 0.41 1.42 8.93 -40.82 -0.36 1.06 16 41 H 0.13 1.95 8.06 -52.49 -0.42 1.52 16 42 H 0.15 2.98 6.25 -52.48 -0.33 2.65 16 LS Contribution 360.15 15.07 5.43 5.43 Total: -1.00 -33.91 360.15 -8.97 -42.87 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -4.27 Total: 12.29 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: -5.36 Total: -14.87 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: 0.83 Total: -34.77 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -0.57 Total: -25.27 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.03 Total: 14.32 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.91 -8.97 -42.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362073875.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.826 kcal (2) G-P(sol) polarization free energy of solvation -33.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds