Wall clock time and date at job start Sat Apr 11 2020 05:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86804 * 120.00135 * 2 1 4 4 H 1.48505 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47147 * 299.99441 * 3 2 1 6 6 H 1.48494 * 109.47300 * 59.99754 * 3 2 1 7 7 C 1.39937 * 120.00099 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99969 * 196.81089 * 7 2 1 9 9 C 1.41404 * 119.99572 * 16.81349 * 7 2 1 10 10 C 1.40783 * 120.21102 * 25.16411 * 9 7 2 11 11 C 1.37651 * 119.88642 * 180.02562 * 10 9 7 12 12 C 1.38516 * 120.32577 * 359.74506 * 11 10 9 13 13 C 1.39269 * 120.42782 * 0.50971 * 12 11 10 14 14 N 1.39864 * 119.95124 * 179.76268 * 13 12 11 15 15 C 1.34779 * 120.00167 * 325.52840 * 14 13 12 16 16 O 1.21599 * 119.99800 * 354.88032 * 15 14 13 17 17 C 1.47492 * 120.00400 * 174.88968 * 15 14 13 18 18 C 1.39875 * 120.71081 * 359.97438 * 17 15 14 19 19 C 1.38610 * 118.63645 * 180.02562 * 18 17 15 20 20 C 1.38104 * 119.53750 * 359.85619 * 19 18 17 21 21 N 1.32432 * 120.63143 * 0.24599 * 20 19 18 22 22 C 1.31992 * 122.29441 * 359.83032 * 21 20 19 23 23 O 1.35424 * 119.83730 * 179.97438 * 22 21 20 24 24 C 1.50920 * 121.02254 * 180.31140 * 20 19 18 25 25 C 1.52926 * 109.78853 * 342.93355 * 24 20 19 26 26 O 1.43208 * 108.53032 * 49.46530 * 25 24 20 27 27 C 1.42749 * 113.05407 * 289.20500 * 26 25 24 28 28 C 1.38295 * 120.09954 * 359.49203 * 13 12 11 29 29 H 0.96997 * 119.99536 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.05549 * 0.02562 * 10 9 7 31 31 H 1.08002 * 119.83161 * 180.02562 * 11 10 9 32 32 H 1.08000 * 119.78775 * 180.27567 * 12 11 10 33 33 H 0.96994 * 120.00012 * 145.51773 * 14 13 12 34 34 H 1.08000 * 120.67667 * 0.03163 * 18 17 15 35 35 H 0.96700 * 114.00432 * 270.01468 * 23 22 21 36 36 H 1.09001 * 109.41818 * 222.83543 * 24 20 19 37 37 H 1.08995 * 109.41984 * 103.03374 * 24 20 19 38 38 H 1.09011 * 109.62818 * 289.75346 * 25 24 20 39 39 H 1.08999 * 109.79013 * 169.27240 * 25 24 20 40 40 H 1.09003 * 109.34031 * 171.82084 * 27 26 25 41 41 H 1.08998 * 109.34143 * 291.34575 * 27 26 25 42 42 H 1.07999 * 120.16164 * 180.23081 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7024 1.3463 0.0006 5 1 1.8837 2.3964 -1.2126 6 1 1.8836 2.3965 1.2124 7 6 2.0080 -1.2119 0.0005 8 1 3.0533 -1.2317 0.2710 9 6 1.3462 -2.4104 -0.3532 10 6 0.2111 -2.3739 -1.1851 11 6 -0.4283 -3.5447 -1.5248 12 6 0.0428 -4.7601 -1.0563 13 6 1.1614 -4.8113 -0.2283 14 7 1.6255 -6.0436 0.2430 15 6 0.7511 -7.0292 0.5270 16 8 -0.4447 -6.8182 0.4629 17 6 1.2447 -8.3637 0.9157 18 6 2.6169 -8.6229 0.9938 19 6 3.0332 -9.8925 1.3630 20 6 2.0915 -10.8624 1.6454 21 7 0.7979 -10.5916 1.5619 22 6 0.3478 -9.4006 1.2139 23 8 -0.9863 -9.1785 1.1439 24 6 2.5072 -12.2536 2.0572 25 6 3.9737 -12.4855 1.6909 26 8 4.7439 -11.3788 2.1736 27 6 4.5101 -10.1744 1.4438 28 6 1.8173 -3.6459 0.1241 29 1 -0.4849 0.8401 -0.0004 30 1 -0.1575 -1.4290 -1.5561 31 1 -1.2988 -3.5157 -2.1634 32 1 -0.4629 -5.6738 -1.3319 33 1 2.5767 -6.1890 0.3654 34 1 3.3373 -7.8497 0.7712 35 1 -1.3704 -9.3608 0.2754 36 1 1.8849 -12.9852 1.5419 37 1 2.3805 -12.3659 3.1339 38 1 4.0738 -12.5564 0.6077 39 1 4.3281 -13.4071 2.1524 40 1 5.0089 -9.3454 1.9459 41 1 4.9134 -10.2786 0.4365 42 1 2.6871 -3.6848 0.7631 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363269879.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:49 Heat of formation + Delta-G solvation = -58.330770 kcal Electronic energy + Delta-G solvation = -28103.617984 eV Core-core repulsion = 24013.769044 eV Total energy + Delta-G solvation = -4089.848940 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.39947 -39.74210 -38.71292 -37.15507 -36.89724 -34.54553 -33.97749 -33.02070 -32.05906 -30.91409 -29.87640 -28.16248 -25.91428 -25.39610 -25.20504 -23.23681 -22.57430 -21.18531 -20.91122 -19.77520 -18.77340 -17.99980 -17.65845 -17.22791 -16.61001 -16.36586 -15.59808 -15.42370 -15.35175 -14.96513 -14.91590 -14.52171 -14.31970 -14.09541 -13.98390 -13.55514 -13.16519 -13.07097 -12.87363 -12.49148 -12.27731 -12.06650 -11.79254 -11.72577 -11.40537 -11.24752 -11.18213 -10.96377 -10.62345 -10.43879 -10.23360 -10.04553 -9.86532 -9.66879 -9.44617 -9.23612 -8.98793 -8.96706 -7.50969 -6.98635 -6.75684 -4.39681 0.30574 0.72051 2.55453 2.77389 2.96119 3.06212 3.10978 3.16765 3.25080 3.32352 3.47147 3.67569 3.91768 4.03677 4.09690 4.23803 4.51140 4.60163 4.64582 4.69450 4.90033 4.93770 5.03286 5.15457 5.21462 5.24715 5.45930 5.47853 5.64205 5.72075 6.03447 6.24790 6.47449 6.56848 6.65893 6.87951 6.94614 7.00469 7.21433 7.34261 7.53080 7.57305 7.61222 7.91624 7.99231 8.08194 8.24712 8.49192 8.63135 8.85850 8.92598 10.17871 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019618 B = 0.002366 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.925791 B =11833.555916 C =12948.135530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.075 3.925 3 Si 0.908 3.092 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.464 4.464 8 H 0.078 0.922 9 C 0.122 3.878 10 C -0.166 4.166 11 C -0.095 4.095 12 C -0.225 4.225 13 C 0.153 3.847 14 N -0.661 5.661 15 C 0.553 3.447 16 O -0.497 6.497 17 C -0.196 4.196 18 C -0.022 4.022 19 C -0.193 4.193 20 C 0.183 3.817 21 N -0.509 5.509 22 C 0.378 3.622 23 O -0.456 6.456 24 C -0.106 4.106 25 C 0.059 3.941 26 O -0.371 6.371 27 C 0.109 3.891 28 C -0.243 4.243 29 H 0.280 0.720 30 H 0.120 0.880 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.397 0.603 34 H 0.147 0.853 35 H 0.406 0.594 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.060 0.940 39 H 0.108 0.892 40 H 0.112 0.888 41 H 0.072 0.928 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.496 -20.584 0.221 22.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.200 1.200 7 C -0.493 4.493 8 H 0.096 0.904 9 C 0.119 3.881 10 C -0.185 4.185 11 C -0.114 4.114 12 C -0.246 4.246 13 C 0.061 3.939 14 N -0.305 5.305 15 C 0.338 3.662 16 O -0.371 6.371 17 C -0.203 4.203 18 C -0.048 4.048 19 C -0.196 4.196 20 C 0.046 3.954 21 N -0.228 5.228 22 C 0.196 3.804 23 O -0.264 6.264 24 C -0.144 4.144 25 C -0.019 4.019 26 O -0.289 6.289 27 C 0.031 3.969 28 C -0.265 4.265 29 H 0.091 0.909 30 H 0.137 0.863 31 H 0.110 0.890 32 H 0.118 0.882 33 H 0.231 0.769 34 H 0.164 0.836 35 H 0.266 0.734 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.078 0.922 39 H 0.126 0.874 40 H 0.129 0.871 41 H 0.090 0.910 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.930 -20.756 1.090 21.909 hybrid contribution 0.880 1.368 -0.629 1.744 sum 7.810 -19.388 0.461 20.907 Atomic orbital electron populations 1.69838 1.07559 1.29134 1.35264 1.25905 0.94732 1.01312 0.92278 0.86266 0.80904 0.81001 0.78561 1.18441 1.19703 1.20025 1.19539 0.97711 0.90955 1.41130 0.90416 1.17379 0.91037 0.91331 0.88360 1.21393 0.99118 0.96909 1.01121 1.20581 0.98412 0.92766 0.99619 1.20270 1.00911 0.97306 1.06152 1.17386 0.97261 0.82570 0.96659 1.43337 1.09429 1.12759 1.64966 1.17741 0.86625 0.83343 0.78441 1.90851 1.14768 1.81558 1.49966 1.21245 0.94192 0.96881 1.07950 1.21582 0.94517 0.96081 0.92586 1.21026 0.98535 0.94591 1.05398 1.20817 0.86757 0.95717 0.92130 1.67093 1.17068 1.22214 1.16414 1.19042 0.85134 0.86366 0.89843 1.84739 1.15722 1.87923 1.38015 1.21169 0.97526 0.91946 1.03739 1.22704 0.89269 0.90337 0.99548 1.88122 1.64806 1.18110 1.57892 1.21381 0.89509 0.88367 0.97595 1.20695 1.05644 0.91394 1.08748 0.90882 0.86252 0.88964 0.88225 0.76856 0.83553 0.73374 0.88180 0.88289 0.92171 0.87428 0.87057 0.91023 0.88674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.52 10.94 55.55 0.61 -19.91 16 2 C 0.08 1.88 5.16 -17.34 -0.09 1.79 16 3 Si 0.91 18.42 29.59 -169.99 -5.03 13.39 16 4 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 5 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 6 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 7 C -0.46 -12.07 9.05 -37.74 -0.34 -12.42 16 8 H 0.08 1.93 7.90 -52.49 -0.41 1.52 16 9 C 0.12 3.21 5.57 -106.85 -0.59 2.61 16 10 C -0.17 -4.31 8.69 -38.83 -0.34 -4.65 16 11 C -0.09 -2.28 10.02 -39.69 -0.40 -2.68 16 12 C -0.23 -5.29 8.66 -39.10 -0.34 -5.63 16 13 C 0.15 3.40 6.25 -83.79 -0.52 2.88 16 14 N -0.66 -11.62 5.28 -10.86 -0.06 -11.67 16 15 C 0.55 9.86 7.50 -12.49 -0.09 9.77 16 16 O -0.50 -10.67 12.95 -16.41 -0.21 -10.89 16 17 C -0.20 -2.78 5.90 -104.74 -0.62 -3.39 16 18 C -0.02 -0.23 9.27 -38.83 -0.36 -0.59 16 19 C -0.19 -1.87 5.80 -104.59 -0.61 -2.48 16 20 C 0.18 1.97 6.68 -82.28 -0.55 1.42 16 21 N -0.51 -6.73 10.23 -9.14 -0.09 -6.83 16 22 C 0.38 5.48 7.77 -16.71 -0.13 5.35 16 23 O -0.46 -6.78 11.68 -39.66 -0.46 -7.25 16 24 C -0.11 -0.78 6.23 -27.81 -0.17 -0.95 16 25 C 0.06 0.34 6.84 37.12 0.25 0.59 16 26 O -0.37 -3.04 10.81 -35.23 -0.38 -3.43 16 27 C 0.11 0.78 6.65 35.94 0.24 1.02 16 28 C -0.24 -5.79 9.70 -38.68 -0.38 -6.17 16 29 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 30 H 0.12 3.19 6.17 -52.49 -0.32 2.86 16 31 H 0.09 2.00 8.06 -52.49 -0.42 1.58 16 32 H 0.10 2.28 6.47 -52.49 -0.34 1.94 16 33 H 0.40 5.37 6.94 -40.82 -0.28 5.09 16 34 H 0.15 1.13 6.53 -52.49 -0.34 0.79 16 35 H 0.41 4.27 9.06 45.56 0.41 4.68 16 36 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.29 8.07 -51.92 -0.42 -0.13 16 39 H 0.11 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 LS Contribution 354.79 15.07 5.35 5.35 Total: -1.00 -33.68 354.79 -9.12 -42.81 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -3.80 Total: 11.95 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: -5.04 Total: -13.53 kcal Atomic # 7 Polarization: -38.87 SS G_CDS: 0.46 Total: -38.41 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -1.06 Total: -21.56 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.03 Total: 13.39 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.68 -9.12 -42.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363269879.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.523 kcal (2) G-P(sol) polarization free energy of solvation -33.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds