Wall clock time and date at job start Sat Apr 11 2020 05:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31573 * 1 3 3 Si 1.86800 * 120.00110 * 2 1 4 4 H 1.48502 * 109.47249 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47590 * 300.00856 * 3 2 1 6 6 H 1.48504 * 109.46906 * 60.00842 * 3 2 1 7 7 C 1.38636 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00217 * 179.97438 * 7 2 1 9 9 O 1.34808 * 120.00197 * 359.97438 * 7 2 1 10 10 C 1.35774 * 117.00323 * 185.34273 * 9 7 2 11 11 C 1.38741 * 120.08683 * 5.58063 * 10 9 7 12 12 C 1.38347 * 119.97579 * 180.02562 * 11 10 9 13 13 F 1.35099 * 119.92170 * 179.97438 * 12 11 10 14 14 C 1.38539 * 120.15040 * 359.97438 * 12 11 10 15 15 C 1.38195 * 120.17936 * 359.97438 * 14 12 11 16 16 C 1.38701 * 120.01988 * 0.02562 * 15 14 12 17 17 N 1.40135 * 120.07718 * 179.97438 * 16 15 14 18 18 C 1.34781 * 119.99567 * 25.48009 * 17 16 15 19 19 O 1.21597 * 120.00095 * 355.97589 * 18 17 16 20 20 N 1.34776 * 119.99785 * 175.97841 * 18 17 16 21 21 C 1.47425 * 125.64884 * 179.71488 * 20 18 17 22 22 C 1.55132 * 104.72058 * 155.81709 * 21 20 18 23 23 H 1.08995 * 111.22574 * 279.17864 * 22 21 20 24 24 C 1.53004 * 110.90339 * 155.27682 * 22 21 20 25 25 O 1.42890 * 109.47199 * 72.97464 * 24 22 21 26 26 C 1.55156 * 101.48484 * 37.29736 * 22 21 20 27 27 H 1.09002 * 110.71643 * 205.96908 * 26 22 21 28 28 O 1.42898 * 110.87583 * 82.76827 * 26 22 21 29 29 C 1.47028 * 125.64603 * 0.02562 * 20 18 17 30 30 H 0.97000 * 119.99927 * 359.97438 * 1 2 3 31 31 H 1.08004 * 120.01088 * 359.97438 * 11 10 9 32 32 H 1.08002 * 119.90884 * 180.28229 * 14 12 11 33 33 H 1.08001 * 119.99085 * 179.97438 * 15 14 12 34 34 H 0.96993 * 120.00377 * 205.48051 * 17 16 15 35 35 H 1.08999 * 110.36479 * 274.74288 * 21 20 18 36 36 H 1.09000 * 110.36477 * 37.07083 * 21 20 18 37 37 H 1.09000 * 109.46938 * 192.97770 * 24 22 21 38 38 H 1.09001 * 109.47106 * 312.97180 * 24 22 21 39 39 H 0.96698 * 114.00289 * 179.97438 * 25 24 22 40 40 H 0.96700 * 114.00441 * 184.93229 * 28 26 22 41 41 H 1.08998 * 109.88138 * 300.43682 * 29 20 18 42 42 H 1.08993 * 109.88689 * 61.45130 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.7098 1.3464 -0.0006 5 1 1.8909 2.3966 -1.2123 6 1 1.8911 2.3963 1.2127 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3349 -2.3681 -0.0005 10 6 2.0699 -3.5042 0.1116 11 6 3.4370 -3.4289 0.3355 12 6 4.1838 -4.5880 0.4488 13 9 5.5150 -4.5134 0.6664 14 6 3.5695 -5.8250 0.3397 15 6 2.2080 -5.9074 0.1178 16 6 1.4523 -4.7499 0.0030 17 7 0.0717 -4.8320 -0.2227 18 6 -0.6108 -5.9270 0.1670 19 8 -0.0181 -6.8738 0.6475 20 7 -1.9502 -5.9726 0.0238 21 6 -2.8165 -7.1044 0.4005 22 6 -4.2134 -6.4711 0.6336 23 1 -4.2808 -6.0169 1.6221 24 6 -5.3224 -7.5056 0.4317 25 8 -5.3308 -8.4159 1.5331 26 6 -4.2520 -5.3901 -0.4788 27 1 -4.9181 -4.5736 -0.2001 28 8 -4.6482 -5.9592 -1.7283 29 6 -2.7885 -4.9042 -0.5397 30 1 -0.4850 0.8400 0.0004 31 1 3.9182 -2.4658 0.4205 32 1 4.1554 -6.7274 0.4334 33 1 1.7323 -6.8732 0.0328 34 1 -0.3928 -4.1009 -0.6592 35 1 -2.8587 -7.8350 -0.4073 36 1 -2.4543 -7.5709 1.3166 37 1 -6.2855 -6.9988 0.3718 38 1 -5.1429 -8.0551 -0.4924 39 1 -6.0107 -9.1008 1.4722 40 1 -4.6149 -5.3403 -2.4706 41 1 -2.6752 -3.9943 0.0496 42 1 -2.5013 -4.7142 -1.5738 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364316011.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:58 Heat of formation + Delta-G solvation = -181.432408 kcal Electronic energy + Delta-G solvation = -29708.159800 eV Core-core repulsion = 25182.203548 eV Total energy + Delta-G solvation = -4525.956252 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -49.82811 -41.99181 -40.81346 -39.68332 -38.03079 -37.44197 -36.25769 -35.66989 -34.30832 -32.75739 -31.07461 -29.90210 -29.76420 -27.43194 -26.67090 -24.38698 -23.87286 -23.13263 -21.37528 -21.15413 -20.16614 -19.82068 -19.22557 -18.64309 -18.11837 -17.90329 -17.15265 -17.00967 -16.87067 -16.56946 -16.33952 -15.99051 -15.90367 -15.58685 -15.34305 -15.29177 -15.09550 -14.95541 -14.72582 -14.24604 -14.02155 -13.92085 -13.78825 -13.44177 -13.21016 -13.06001 -12.75521 -12.60833 -12.39002 -12.12820 -11.98018 -11.88128 -11.69528 -11.47291 -11.23007 -10.88853 -10.82485 -10.81756 -9.87676 -9.54335 -8.71198 -8.51598 -6.17019 0.19892 0.44684 1.36724 1.38612 1.43099 1.53479 1.91889 2.13688 2.67838 2.74595 3.02686 3.05135 3.16593 3.20326 3.43862 3.45211 3.62668 3.93856 4.11627 4.14643 4.15927 4.30655 4.35286 4.42564 4.50705 4.57468 4.59923 4.69003 4.76470 4.90005 4.93833 4.97149 5.12629 5.18492 5.21224 5.29529 5.37895 5.52446 5.86713 5.93389 6.05133 6.74305 6.82923 6.93385 6.95871 7.31483 7.61491 8.69306 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010460 B = 0.003421 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2676.093950 B = 8181.828237 C =10472.740473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.007 4.007 3 Si 1.011 2.989 4 H -0.258 1.258 5 H -0.266 1.266 6 H -0.270 1.270 7 C -0.415 4.415 8 H 0.098 0.902 9 O -0.203 6.203 10 C 0.129 3.871 11 C -0.260 4.260 12 C 0.119 3.881 13 F -0.144 7.144 14 C -0.201 4.201 15 C -0.069 4.069 16 C 0.080 3.920 17 N -0.660 5.660 18 C 0.717 3.283 19 O -0.608 6.608 20 N -0.630 5.630 21 C 0.138 3.862 22 C -0.093 4.093 23 H 0.101 0.899 24 C 0.102 3.898 25 O -0.597 6.597 26 C 0.120 3.880 27 H 0.112 0.888 28 O -0.564 6.564 29 C 0.058 3.942 30 H 0.275 0.725 31 H 0.138 0.862 32 H 0.157 0.843 33 H 0.162 0.838 34 H 0.413 0.587 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.058 0.942 39 H 0.399 0.601 40 H 0.401 0.599 41 H 0.075 0.925 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.753 -9.582 -3.315 15.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.206 4.206 3 Si 0.831 3.169 4 H -0.182 1.182 5 H -0.191 1.191 6 H -0.195 1.195 7 C -0.491 4.491 8 H 0.115 0.885 9 O -0.109 6.109 10 C 0.075 3.925 11 C -0.281 4.281 12 C 0.099 3.901 13 F -0.123 7.123 14 C -0.220 4.220 15 C -0.089 4.089 16 C -0.016 4.016 17 N -0.306 5.306 18 C 0.419 3.581 19 O -0.489 6.489 20 N -0.368 5.368 21 C 0.015 3.985 22 C -0.112 4.112 23 H 0.119 0.881 24 C 0.024 3.976 25 O -0.406 6.406 26 C 0.060 3.940 27 H 0.129 0.871 28 O -0.373 6.373 29 C -0.065 4.065 30 H 0.084 0.916 31 H 0.155 0.845 32 H 0.174 0.826 33 H 0.180 0.820 34 H 0.249 0.751 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.250 0.750 40 H 0.253 0.747 41 H 0.093 0.907 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.287 -10.205 -2.435 15.410 hybrid contribution 0.336 1.532 -0.541 1.659 sum -10.951 -8.673 -2.976 14.283 Atomic orbital electron populations 1.70112 1.07438 1.28893 1.47558 1.26338 0.96856 1.01950 0.95504 0.84625 0.78214 0.75442 0.78619 1.18195 1.19081 1.19520 1.21766 0.92492 0.81081 1.53752 0.88456 1.83894 1.34615 1.11803 1.80564 1.19005 0.90486 0.86912 0.96061 1.20904 0.93736 0.98999 1.14419 1.17454 0.76935 0.94155 1.01588 1.91425 1.31156 1.97332 1.92402 1.20905 0.94916 0.96316 1.09897 1.21247 0.92328 0.97932 0.97429 1.16996 0.82870 0.91118 1.10603 1.42204 1.06385 1.20367 1.61643 1.15508 0.81036 0.82642 0.78879 1.90763 1.67535 1.37754 1.52873 1.47517 1.03237 1.20116 1.65889 1.22191 0.88299 0.87903 1.00070 1.22517 0.93413 0.96189 0.99081 0.88064 1.21797 0.96915 0.90193 0.88662 1.86438 1.61444 1.46113 1.46570 1.22612 0.91431 0.95081 0.84893 0.87065 1.86432 1.89366 1.43449 1.18055 1.23141 0.92500 0.90766 1.00115 0.91584 0.84456 0.82553 0.82048 0.75057 0.91161 0.91980 0.91215 0.92378 0.75047 0.74709 0.90709 0.89693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.57 13.67 21.61 0.30 -49.27 16 2 C -0.01 -0.35 5.49 84.83 0.47 0.12 16 3 Si 1.01 40.17 29.55 68.60 2.03 42.20 16 4 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 5 H -0.27 -10.07 7.11 99.48 0.71 -9.37 16 6 H -0.27 -10.41 7.11 99.48 0.71 -9.71 16 7 C -0.42 -22.37 9.44 67.92 0.64 -21.73 16 8 H 0.10 4.96 5.29 -2.91 -0.02 4.95 16 9 O -0.20 -10.99 9.18 -22.78 -0.21 -11.20 16 10 C 0.13 6.17 6.66 22.69 0.15 6.32 16 11 C -0.26 -11.61 9.11 22.42 0.20 -11.41 16 12 C 0.12 4.72 7.29 22.37 0.16 4.88 16 13 F -0.14 -5.39 17.26 44.97 0.78 -4.62 16 14 C -0.20 -7.32 10.02 22.33 0.22 -7.10 16 15 C -0.07 -2.73 8.79 22.37 0.20 -2.53 16 16 C 0.08 3.47 6.48 38.22 0.25 3.72 16 17 N -0.66 -26.12 5.24 -316.68 -1.66 -27.78 16 18 C 0.72 27.08 8.38 179.05 1.50 28.58 16 19 O -0.61 -25.87 13.51 -4.02 -0.05 -25.93 16 20 N -0.63 -18.67 3.32 -829.29 -2.76 -21.43 16 21 C 0.14 3.57 6.34 86.93 0.55 4.12 16 22 C -0.09 -1.76 3.24 -9.32 -0.03 -1.79 16 23 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 24 C 0.10 1.56 5.97 71.98 0.43 1.99 16 25 O -0.60 -10.04 13.62 -148.98 -2.03 -12.07 16 26 C 0.12 1.86 4.07 31.78 0.13 1.99 16 27 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 28 O -0.56 -7.65 12.27 -148.98 -1.83 -9.48 16 29 C 0.06 1.28 5.91 86.73 0.51 1.80 16 30 H 0.27 13.82 8.31 -92.71 -0.77 13.05 16 31 H 0.14 6.19 5.71 -2.91 -0.02 6.17 16 32 H 0.16 4.66 8.06 -2.91 -0.02 4.64 16 33 H 0.16 6.37 5.51 -2.91 -0.02 6.35 16 34 H 0.41 15.90 7.35 -92.71 -0.68 15.21 16 35 H 0.07 1.79 7.91 -2.39 -0.02 1.77 16 36 H 0.06 1.86 8.03 -2.39 -0.02 1.84 16 37 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.06 0.90 7.56 -2.39 -0.02 0.89 16 39 H 0.40 2.86 9.12 -74.06 -0.68 2.19 16 40 H 0.40 2.49 9.10 -74.06 -0.67 1.82 16 41 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.08 1.73 8.06 -2.39 -0.02 1.71 16 Total: -1.00 -71.43 358.74 -0.96 -72.38 By element: Atomic # 1 Polarization: 39.13 SS G_CDS: -0.91 Total: 38.22 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: 5.39 Total: 8.96 kcal Atomic # 7 Polarization: -94.36 SS G_CDS: -4.12 Total: -98.48 kcal Atomic # 8 Polarization: -54.54 SS G_CDS: -4.12 Total: -58.67 kcal Atomic # 9 Polarization: -5.39 SS G_CDS: 0.78 Total: -4.62 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 2.03 Total: 42.20 kcal Total: -71.43 -0.96 -72.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364316011.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.050 kcal (2) G-P(sol) polarization free energy of solvation -71.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds