Wall clock time and date at job start Sat Apr 11 2020 05:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31573 * 1 3 3 Si 1.86800 * 119.99767 * 2 1 4 4 H 1.48499 * 109.47285 * 89.99913 * 3 2 1 5 5 H 1.48502 * 109.46968 * 209.99875 * 3 2 1 6 6 H 1.48499 * 109.47158 * 330.00310 * 3 2 1 7 7 C 1.38633 * 120.00293 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00422 * 179.97438 * 7 2 1 9 9 O 1.34809 * 120.00013 * 0.02562 * 7 2 1 10 10 C 1.35782 * 117.00231 * 174.97758 * 9 7 2 11 11 C 1.38741 * 120.08427 * 5.19578 * 10 9 7 12 12 C 1.38347 * 119.97550 * 179.70140 * 11 10 9 13 13 F 1.35098 * 119.92806 * 180.31995 * 12 11 10 14 14 C 1.38549 * 120.14972 * 0.57293 * 12 11 10 15 15 C 1.38199 * 120.17239 * 359.72277 * 14 12 11 16 16 C 1.38698 * 120.02486 * 359.97438 * 15 14 12 17 17 N 1.40132 * 120.07704 * 180.02562 * 16 15 14 18 18 C 1.34777 * 119.99641 * 335.22463 * 17 16 15 19 19 O 1.21593 * 120.00105 * 354.32756 * 18 17 16 20 20 N 1.34784 * 119.99624 * 174.32337 * 18 17 16 21 21 C 1.47420 * 125.65025 * 0.02963 * 20 18 17 22 22 C 1.54910 * 104.83365 * 204.08777 * 21 20 18 23 23 H 1.08993 * 111.00238 * 204.91282 * 22 21 20 24 24 O 1.42900 * 110.99982 * 81.06477 * 22 21 20 25 25 C 1.55152 * 101.57947 * 322.99293 * 22 21 20 26 26 H 1.09007 * 110.71733 * 277.13528 * 25 22 21 27 27 C 1.53000 * 110.72003 * 153.86543 * 25 22 21 28 28 O 1.42904 * 109.47173 * 174.99642 * 27 25 22 29 29 C 1.47018 * 125.64356 * 179.71425 * 20 18 17 30 30 H 0.97007 * 119.99848 * 179.97438 * 1 2 3 31 31 H 1.08001 * 120.01235 * 359.97220 * 11 10 9 32 32 H 1.07992 * 119.91067 * 179.74656 * 14 12 11 33 33 H 1.08003 * 119.98799 * 179.97438 * 15 14 12 34 34 H 0.96994 * 120.00356 * 155.22442 * 17 16 15 35 35 H 1.08999 * 110.36833 * 322.92852 * 21 20 18 36 36 H 1.08998 * 110.36569 * 85.13668 * 21 20 18 37 37 H 0.96694 * 114.00432 * 61.45529 * 24 22 21 38 38 H 1.09001 * 109.47204 * 294.99478 * 27 25 22 39 39 H 1.09000 * 109.47521 * 54.99791 * 27 25 22 40 40 H 0.96695 * 114.00020 * 179.97438 * 28 27 25 41 41 H 1.08999 * 109.89109 * 298.39983 * 29 20 18 42 42 H 1.09001 * 109.88432 * 59.56609 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4971 2.0465 1.4000 5 1 3.5472 1.4402 -0.7000 6 1 1.4470 2.6527 -0.7000 7 6 2.0090 -1.2006 0.0005 8 1 3.0889 -1.2006 0.0001 9 8 1.3350 -2.3681 0.0005 10 6 2.0705 -3.5045 -0.1048 11 6 3.4564 -3.4391 -0.0978 12 6 4.2036 -4.5991 -0.1991 13 9 5.5530 -4.5349 -0.1856 14 6 3.5713 -5.8259 -0.3196 15 6 2.1912 -5.8976 -0.3334 16 6 1.4350 -4.7399 -0.2260 17 7 0.0355 -4.8114 -0.2394 18 6 -0.5803 -5.8528 -0.8334 19 8 0.0720 -6.6758 -1.4464 20 7 -1.9192 -5.9819 -0.7480 21 6 -2.8277 -5.0614 -0.0405 22 6 -4.0747 -5.9163 0.2969 23 1 -4.9585 -5.2891 0.4132 24 8 -3.8525 -6.7067 1.4665 25 6 -4.1897 -6.8110 -0.9654 26 1 -4.7096 -6.2840 -1.7656 27 6 -4.8963 -8.1269 -0.6337 28 8 -5.0918 -8.8782 -1.8334 29 6 -2.7161 -7.0605 -1.3504 30 1 -0.4850 -0.8401 -0.0004 31 1 3.9517 -2.4835 -0.0089 32 1 4.1584 -6.7285 -0.4025 33 1 1.7014 -6.8556 -0.4279 34 1 -0.4899 -4.1116 0.1788 35 1 -2.3604 -4.6950 0.8735 36 1 -3.1011 -4.2271 -0.6865 37 1 -3.6775 -6.1887 2.2640 38 1 -4.2842 -8.7031 0.0601 39 1 -5.8627 -7.9152 -0.1761 40 1 -5.5352 -9.7268 -1.6982 41 1 -2.6059 -7.0419 -2.4346 42 1 -2.3909 -8.0245 -0.9592 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364316013.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:02 Heat of formation + Delta-G solvation = -160.461495 kcal Electronic energy + Delta-G solvation = -29811.883290 eV Core-core repulsion = 25286.836405 eV Total energy + Delta-G solvation = -4525.046885 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -48.27579 -40.70516 -39.51842 -38.42577 -36.83507 -36.47822 -35.32111 -34.20548 -32.42336 -31.86345 -29.45872 -28.96138 -28.32958 -25.75005 -25.14044 -23.34228 -22.35157 -21.70424 -20.54865 -19.85090 -18.76938 -18.49375 -17.99015 -17.52499 -17.27365 -16.56277 -16.16586 -15.75997 -15.22234 -15.09720 -15.00968 -14.90981 -14.58630 -14.34633 -13.99697 -13.94706 -13.91264 -13.75892 -13.45567 -13.02055 -12.87300 -12.56229 -12.39144 -12.33533 -11.87920 -11.46603 -11.35361 -11.19899 -10.95105 -10.86734 -10.74631 -10.57105 -10.39051 -10.21885 -9.92069 -9.85557 -9.50799 -8.90953 -8.65063 -7.92382 -7.11894 -6.93169 -4.22038 1.79247 2.06177 2.61495 3.17215 3.22436 3.32280 3.36364 3.63937 3.80373 3.95017 4.02675 4.13506 4.32766 4.37160 4.74261 4.83673 4.88632 4.98254 4.99016 5.05626 5.09984 5.29442 5.33861 5.36377 5.50932 5.58052 5.69186 5.78160 5.89191 5.94314 6.04191 6.22797 6.52069 6.65286 6.84199 6.89079 7.02580 7.16088 7.24654 7.33178 7.38148 7.58275 8.07687 8.21274 8.69419 8.75286 9.36066 10.50047 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011065 B = 0.003358 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2529.916785 B = 8337.519111 C =10403.436624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.014 3.986 3 Si 1.097 2.903 4 H -0.280 1.280 5 H -0.281 1.281 6 H -0.275 1.275 7 C -0.469 4.469 8 H 0.087 0.913 9 O -0.198 6.198 10 C 0.157 3.843 11 C -0.251 4.251 12 C 0.124 3.876 13 F -0.151 7.151 14 C -0.221 4.221 15 C -0.062 4.062 16 C 0.082 3.918 17 N -0.663 5.663 18 C 0.722 3.278 19 O -0.577 6.577 20 N -0.632 5.632 21 C 0.064 3.936 22 C 0.100 3.900 23 H 0.086 0.914 24 O -0.554 6.554 25 C -0.092 4.092 26 H 0.105 0.895 27 C 0.095 3.905 28 O -0.576 6.576 29 C 0.142 3.858 30 H 0.279 0.721 31 H 0.144 0.856 32 H 0.124 0.876 33 H 0.150 0.850 34 H 0.408 0.592 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.384 0.616 38 H 0.059 0.941 39 H 0.050 0.950 40 H 0.381 0.619 41 H 0.070 0.930 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.608 -11.281 2.568 15.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.191 4.191 3 Si 0.921 3.079 4 H -0.206 1.206 5 H -0.207 1.207 6 H -0.200 1.200 7 C -0.545 4.545 8 H 0.104 0.896 9 O -0.102 6.102 10 C 0.102 3.898 11 C -0.272 4.272 12 C 0.104 3.896 13 F -0.130 7.130 14 C -0.241 4.241 15 C -0.083 4.083 16 C -0.013 4.013 17 N -0.309 5.309 18 C 0.425 3.575 19 O -0.455 6.455 20 N -0.370 5.370 21 C -0.059 4.059 22 C 0.040 3.960 23 H 0.104 0.896 24 O -0.361 6.361 25 C -0.111 4.111 26 H 0.123 0.877 27 C 0.017 3.983 28 O -0.382 6.382 29 C 0.019 3.981 30 H 0.089 0.911 31 H 0.162 0.838 32 H 0.142 0.858 33 H 0.167 0.833 34 H 0.244 0.756 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.232 0.768 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.228 0.772 41 H 0.088 0.912 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.308 -10.102 1.456 14.506 hybrid contribution 0.165 -1.124 0.847 1.417 sum -10.143 -11.225 2.303 15.303 Atomic orbital electron populations 1.70601 1.06515 1.31307 1.42517 1.26550 0.96785 1.01068 0.94724 0.83059 0.74334 0.72948 0.77533 1.20583 1.20663 1.19980 1.22259 0.93325 0.81737 1.57162 0.89576 1.83581 1.35133 1.12044 1.79440 1.18502 0.89476 0.86144 0.95714 1.20841 0.93258 0.98516 1.14582 1.17452 0.76016 0.94308 1.01841 1.91412 1.30047 1.97370 1.94121 1.20525 0.94586 0.95919 1.13072 1.20822 0.92236 0.97568 0.97697 1.16714 0.81110 0.91405 1.12039 1.42225 1.05255 1.24863 1.58571 1.15315 0.80063 0.82402 0.79715 1.90866 1.62987 1.44479 1.47127 1.47407 1.04062 1.28425 1.57145 1.23100 0.91258 0.93549 0.98037 1.22888 0.95808 0.91557 0.85706 0.89640 1.86474 1.94016 1.37003 1.18595 1.22341 0.96029 0.96214 0.96545 0.87715 1.21913 0.98685 0.91422 0.86308 1.86472 1.82895 1.35835 1.32974 1.21710 0.87865 0.90285 0.98239 0.91111 0.83818 0.85800 0.83283 0.75602 0.90029 0.89948 0.76754 0.92256 0.93166 0.77232 0.91162 0.91137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.23 13.70 55.48 0.76 -23.47 16 2 C 0.01 0.37 5.49 -17.52 -0.10 0.28 16 3 Si 1.10 22.72 29.92 -169.99 -5.09 17.63 16 4 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.28 -5.53 7.11 56.52 0.40 -5.12 16 6 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 7 C -0.47 -12.46 9.49 30.88 0.29 -12.16 16 8 H 0.09 2.20 5.20 -52.49 -0.27 1.92 16 9 O -0.20 -5.09 8.57 0.01 0.00 -5.09 16 10 C 0.16 3.66 6.66 -38.94 -0.26 3.40 16 11 C -0.25 -5.60 9.14 -39.36 -0.36 -5.96 16 12 C 0.12 2.53 7.29 -39.43 -0.29 2.24 16 13 F -0.15 -2.94 17.26 2.25 0.04 -2.90 16 14 C -0.22 -4.22 10.02 -39.48 -0.40 -4.62 16 15 C -0.06 -1.25 8.71 -39.43 -0.34 -1.59 16 16 C 0.08 1.74 6.45 -83.44 -0.54 1.21 16 17 N -0.66 -12.51 5.24 -14.07 -0.07 -12.58 16 18 C 0.72 13.25 8.29 -86.91 -0.72 12.53 16 19 O -0.58 -12.20 13.84 5.28 0.07 -12.12 16 20 N -0.63 -9.02 3.33 -176.23 -0.59 -9.61 16 21 C 0.06 0.68 6.26 -2.53 -0.02 0.66 16 22 C 0.10 0.82 4.17 -24.58 -0.10 0.71 16 23 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 24 O -0.55 -4.63 12.34 -35.23 -0.43 -5.07 16 25 C -0.09 -0.86 3.13 -88.78 -0.28 -1.14 16 26 H 0.10 0.91 8.14 -51.92 -0.42 0.49 16 27 C 0.09 0.79 5.87 37.16 0.22 1.01 16 28 O -0.58 -5.05 13.60 -35.23 -0.48 -5.53 16 29 C 0.14 1.81 6.42 -3.06 -0.02 1.79 16 30 H 0.28 7.71 7.97 -40.82 -0.33 7.38 16 31 H 0.14 3.23 5.63 -52.49 -0.30 2.93 16 32 H 0.12 2.04 8.06 -52.49 -0.42 1.62 16 33 H 0.15 2.96 5.78 -52.48 -0.30 2.65 16 34 H 0.41 7.24 6.90 -40.82 -0.28 6.95 16 35 H 0.08 0.82 7.39 -51.93 -0.38 0.43 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.38 1.91 9.11 45.56 0.42 2.32 16 38 H 0.06 0.54 7.53 -51.93 -0.39 0.15 16 39 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.38 1.61 9.12 45.56 0.42 2.03 16 41 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.07 0.97 7.69 -51.93 -0.40 0.57 16 LS Contribution 357.60 15.07 5.39 5.39 Total: -1.00 -33.59 357.60 -6.46 -40.05 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -3.15 Total: 14.94 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -2.91 Total: -1.65 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: 0.10 Total: -45.66 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -0.84 Total: -27.81 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.04 Total: -2.90 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.09 Total: 17.63 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.59 -6.46 -40.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364316013.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.408 kcal (2) G-P(sol) polarization free energy of solvation -33.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds