Wall clock time and date at job start Sat Apr 11 2020 05:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31573 * 1 3 3 Si 1.86800 * 119.99767 * 2 1 4 4 H 1.48499 * 109.47285 * 89.99913 * 3 2 1 5 5 H 1.48502 * 109.46968 * 209.99875 * 3 2 1 6 6 H 1.48499 * 109.47158 * 330.00310 * 3 2 1 7 7 C 1.38633 * 120.00293 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00422 * 179.97438 * 7 2 1 9 9 O 1.34809 * 120.00013 * 0.02562 * 7 2 1 10 10 C 1.35782 * 117.00231 * 174.97758 * 9 7 2 11 11 C 1.38741 * 120.08427 * 5.19578 * 10 9 7 12 12 C 1.38347 * 119.97550 * 179.70140 * 11 10 9 13 13 F 1.35098 * 119.92806 * 180.31995 * 12 11 10 14 14 C 1.38549 * 120.14972 * 0.57293 * 12 11 10 15 15 C 1.38199 * 120.17239 * 359.72277 * 14 12 11 16 16 C 1.38698 * 120.02486 * 359.97438 * 15 14 12 17 17 N 1.40132 * 120.07704 * 180.02562 * 16 15 14 18 18 C 1.34777 * 119.99641 * 335.22463 * 17 16 15 19 19 O 1.21593 * 120.00105 * 354.32756 * 18 17 16 20 20 N 1.34784 * 119.99624 * 174.32337 * 18 17 16 21 21 C 1.47420 * 125.65025 * 0.02963 * 20 18 17 22 22 C 1.54910 * 104.83365 * 204.08777 * 21 20 18 23 23 H 1.08993 * 111.00238 * 204.91282 * 22 21 20 24 24 O 1.42900 * 110.99982 * 81.06477 * 22 21 20 25 25 C 1.55152 * 101.57947 * 322.99293 * 22 21 20 26 26 H 1.09007 * 110.71733 * 277.13528 * 25 22 21 27 27 C 1.53000 * 110.72003 * 153.86543 * 25 22 21 28 28 O 1.42904 * 109.47173 * 174.99642 * 27 25 22 29 29 C 1.47018 * 125.64356 * 179.71425 * 20 18 17 30 30 H 0.97007 * 119.99848 * 179.97438 * 1 2 3 31 31 H 1.08001 * 120.01235 * 359.97220 * 11 10 9 32 32 H 1.07992 * 119.91067 * 179.74656 * 14 12 11 33 33 H 1.08003 * 119.98799 * 179.97438 * 15 14 12 34 34 H 0.96994 * 120.00356 * 155.22442 * 17 16 15 35 35 H 1.08999 * 110.36833 * 322.92852 * 21 20 18 36 36 H 1.08998 * 110.36569 * 85.13668 * 21 20 18 37 37 H 0.96694 * 114.00432 * 61.45529 * 24 22 21 38 38 H 1.09001 * 109.47204 * 294.99478 * 27 25 22 39 39 H 1.09000 * 109.47521 * 54.99791 * 27 25 22 40 40 H 0.96695 * 114.00020 * 179.97438 * 28 27 25 41 41 H 1.08999 * 109.89109 * 298.39983 * 29 20 18 42 42 H 1.09001 * 109.88432 * 59.56609 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4971 2.0465 1.4000 5 1 3.5472 1.4402 -0.7000 6 1 1.4470 2.6527 -0.7000 7 6 2.0090 -1.2006 0.0005 8 1 3.0889 -1.2006 0.0001 9 8 1.3350 -2.3681 0.0005 10 6 2.0705 -3.5045 -0.1048 11 6 3.4564 -3.4391 -0.0978 12 6 4.2036 -4.5991 -0.1991 13 9 5.5530 -4.5349 -0.1856 14 6 3.5713 -5.8259 -0.3196 15 6 2.1912 -5.8976 -0.3334 16 6 1.4350 -4.7399 -0.2260 17 7 0.0355 -4.8114 -0.2394 18 6 -0.5803 -5.8528 -0.8334 19 8 0.0720 -6.6758 -1.4464 20 7 -1.9192 -5.9819 -0.7480 21 6 -2.8277 -5.0614 -0.0405 22 6 -4.0747 -5.9163 0.2969 23 1 -4.9585 -5.2891 0.4132 24 8 -3.8525 -6.7067 1.4665 25 6 -4.1897 -6.8110 -0.9654 26 1 -4.7096 -6.2840 -1.7656 27 6 -4.8963 -8.1269 -0.6337 28 8 -5.0918 -8.8782 -1.8334 29 6 -2.7161 -7.0605 -1.3504 30 1 -0.4850 -0.8401 -0.0004 31 1 3.9517 -2.4835 -0.0089 32 1 4.1584 -6.7285 -0.4025 33 1 1.7014 -6.8556 -0.4279 34 1 -0.4899 -4.1116 0.1788 35 1 -2.3604 -4.6950 0.8735 36 1 -3.1011 -4.2271 -0.6865 37 1 -3.6775 -6.1887 2.2640 38 1 -4.2842 -8.7031 0.0601 39 1 -5.8627 -7.9152 -0.1761 40 1 -5.5352 -9.7268 -1.6982 41 1 -2.6059 -7.0419 -2.4346 42 1 -2.3909 -8.0245 -0.9592 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364316013.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:01 Heat of formation + Delta-G solvation = -187.731789 kcal Electronic energy + Delta-G solvation = -29813.065819 eV Core-core repulsion = 25286.836405 eV Total energy + Delta-G solvation = -4526.229414 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -49.89058 -42.06956 -40.91776 -39.74860 -38.17577 -37.46660 -36.26051 -35.75989 -34.35046 -32.83692 -31.15561 -29.91769 -29.82989 -27.09528 -26.72790 -24.41311 -23.90157 -23.26452 -21.47220 -21.10660 -20.57147 -19.88812 -19.21469 -18.68291 -18.17070 -17.92241 -17.50494 -17.14878 -16.75031 -16.67712 -16.41668 -16.04472 -15.73514 -15.65715 -15.56105 -15.43799 -15.18217 -15.07491 -14.82422 -14.20690 -14.03156 -13.88026 -13.82918 -13.38459 -13.11079 -12.74126 -12.68353 -12.56070 -12.43063 -12.14155 -11.94893 -11.88658 -11.70558 -11.56324 -11.28274 -11.00862 -10.85706 -10.78742 -9.86630 -9.63599 -8.96334 -8.78979 -6.26180 0.10736 0.35501 1.31024 1.50892 1.61522 1.77955 1.85191 2.27952 2.62784 2.70049 2.95426 3.01595 3.08870 3.18019 3.34945 3.35378 3.59189 3.83338 4.06645 4.07812 4.14504 4.25444 4.27630 4.43183 4.43996 4.50946 4.56482 4.66224 4.71657 4.82920 4.86187 4.92992 5.10447 5.11203 5.17518 5.21946 5.36072 5.48582 5.79318 5.90756 6.20992 6.66911 6.78514 6.78899 6.91806 7.25394 7.46291 8.48556 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011065 B = 0.003358 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2529.916785 B = 8337.519111 C =10403.436624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.030 4.030 3 Si 1.141 2.859 4 H -0.263 1.263 5 H -0.266 1.266 6 H -0.273 1.273 7 C -0.489 4.489 8 H 0.089 0.911 9 O -0.225 6.225 10 C 0.132 3.868 11 C -0.257 4.257 12 C 0.119 3.881 13 F -0.143 7.143 14 C -0.195 4.195 15 C -0.065 4.065 16 C 0.084 3.916 17 N -0.662 5.662 18 C 0.716 3.284 19 O -0.610 6.610 20 N -0.627 5.627 21 C 0.054 3.946 22 C 0.115 3.885 23 H 0.122 0.878 24 O -0.567 6.567 25 C -0.089 4.089 26 H 0.115 0.885 27 C 0.100 3.900 28 O -0.595 6.595 29 C 0.138 3.862 30 H 0.266 0.734 31 H 0.137 0.863 32 H 0.160 0.840 33 H 0.156 0.844 34 H 0.412 0.588 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.399 0.601 38 H 0.049 0.951 39 H 0.072 0.928 40 H 0.399 0.601 41 H 0.055 0.945 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.124 -11.960 3.064 16.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.229 4.229 3 Si 0.958 3.042 4 H -0.188 1.188 5 H -0.191 1.191 6 H -0.198 1.198 7 C -0.564 4.564 8 H 0.106 0.894 9 O -0.131 6.131 10 C 0.078 3.922 11 C -0.277 4.277 12 C 0.099 3.901 13 F -0.121 7.121 14 C -0.215 4.215 15 C -0.086 4.086 16 C -0.011 4.011 17 N -0.308 5.308 18 C 0.419 3.581 19 O -0.491 6.491 20 N -0.364 5.364 21 C -0.069 4.069 22 C 0.056 3.944 23 H 0.140 0.860 24 O -0.376 6.376 25 C -0.108 4.108 26 H 0.133 0.867 27 C 0.022 3.978 28 O -0.404 6.404 29 C 0.016 3.984 30 H 0.074 0.926 31 H 0.155 0.845 32 H 0.177 0.823 33 H 0.173 0.827 34 H 0.248 0.752 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.250 0.750 38 H 0.067 0.933 39 H 0.090 0.910 40 H 0.249 0.751 41 H 0.074 0.926 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.861 -10.832 1.979 15.467 hybrid contribution 0.367 -1.203 0.668 1.424 sum -10.495 -12.034 2.647 16.186 Atomic orbital electron populations 1.70703 1.07372 1.30399 1.45421 1.28111 0.96942 1.04165 0.93657 0.82574 0.73771 0.69268 0.78567 1.18833 1.19104 1.19781 1.22561 0.93706 0.82520 1.57617 0.89380 1.83570 1.35591 1.12364 1.81595 1.18821 0.90090 0.86266 0.96975 1.20930 0.93210 0.99142 1.14457 1.17422 0.76347 0.94120 1.02212 1.91432 1.29305 1.97334 1.94064 1.20910 0.94383 0.96657 1.09538 1.20993 0.92691 0.97323 0.97595 1.16950 0.82402 0.91096 1.10680 1.42205 1.04574 1.25286 1.58776 1.15480 0.81358 0.81806 0.79469 1.90820 1.64302 1.45435 1.48520 1.47487 1.03091 1.29245 1.56550 1.23453 0.91783 0.93677 0.97969 1.22889 0.95435 0.90912 0.85197 0.86027 1.86447 1.94025 1.37843 1.19281 1.22394 0.93359 0.97422 0.97580 0.86667 1.21857 0.99333 0.90621 0.85975 1.86427 1.83373 1.37212 1.33425 1.21834 0.90093 0.89266 0.97236 0.92561 0.84516 0.82282 0.82697 0.75166 0.89595 0.89377 0.74994 0.93305 0.90973 0.75090 0.92633 0.92482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.26 13.70 21.61 0.30 -50.97 16 2 C -0.03 -1.61 5.49 84.83 0.47 -1.14 16 3 Si 1.14 45.64 29.92 68.60 2.05 47.70 16 4 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 5 H -0.27 -9.88 7.11 99.48 0.71 -9.17 16 6 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 7 C -0.49 -26.61 9.49 67.91 0.64 -25.97 16 8 H 0.09 4.60 5.20 -2.91 -0.02 4.59 16 9 O -0.22 -11.99 8.57 -22.88 -0.20 -12.18 16 10 C 0.13 6.25 6.66 22.68 0.15 6.40 16 11 C -0.26 -11.50 9.14 22.42 0.20 -11.29 16 12 C 0.12 4.70 7.29 22.37 0.16 4.87 16 13 F -0.14 -5.29 17.26 44.97 0.78 -4.51 16 14 C -0.20 -7.02 10.02 22.33 0.22 -6.80 16 15 C -0.07 -2.55 8.71 22.37 0.19 -2.35 16 16 C 0.08 3.61 6.45 38.22 0.25 3.85 16 17 N -0.66 -25.38 5.24 -316.69 -1.66 -27.04 16 18 C 0.72 26.55 8.29 179.05 1.49 28.03 16 19 O -0.61 -26.06 13.84 -4.01 -0.06 -26.12 16 20 N -0.63 -17.84 3.33 -829.73 -2.76 -20.60 16 21 C 0.05 1.08 6.26 86.86 0.54 1.62 16 22 C 0.12 1.59 4.17 31.98 0.13 1.72 16 23 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 24 O -0.57 -8.16 12.34 -148.98 -1.84 -10.00 16 25 C -0.09 -1.50 3.13 -9.60 -0.03 -1.53 16 26 H 0.12 1.74 8.14 -2.38 -0.02 1.72 16 27 C 0.10 1.48 5.87 71.98 0.42 1.90 16 28 O -0.60 -9.51 13.60 -148.98 -2.03 -11.54 16 29 C 0.14 3.51 6.42 86.73 0.56 4.07 16 30 H 0.27 15.27 7.97 -92.70 -0.74 14.53 16 31 H 0.14 6.25 5.63 -2.91 -0.02 6.23 16 32 H 0.16 4.63 8.06 -2.91 -0.02 4.60 16 33 H 0.16 5.99 5.78 -2.91 -0.02 5.97 16 34 H 0.41 15.02 6.90 -92.71 -0.64 14.38 16 35 H 0.09 1.65 7.39 -2.39 -0.02 1.64 16 36 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.40 3.04 9.11 -74.06 -0.67 2.37 16 38 H 0.05 0.83 7.53 -2.39 -0.02 0.81 16 39 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.40 2.72 9.12 -74.06 -0.68 2.04 16 41 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.06 1.59 7.69 -2.39 -0.02 1.57 16 Total: -1.00 -73.94 357.60 -0.83 -74.78 By element: Atomic # 1 Polarization: 37.93 SS G_CDS: -0.83 Total: 37.10 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: 5.41 Total: 3.38 kcal Atomic # 7 Polarization: -94.49 SS G_CDS: -4.12 Total: -98.61 kcal Atomic # 8 Polarization: -55.72 SS G_CDS: -4.12 Total: -59.84 kcal Atomic # 9 Polarization: -5.29 SS G_CDS: 0.78 Total: -4.51 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.05 Total: 47.70 kcal Total: -73.94 -0.83 -74.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364316013.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.954 kcal (2) G-P(sol) polarization free energy of solvation -73.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds