Wall clock time and date at job start Sat Apr 11 2020 05:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31571 * 1 3 3 Si 1.86807 * 119.99871 * 2 1 4 4 H 1.48497 * 109.47350 * 239.99921 * 3 2 1 5 5 H 1.48499 * 109.46947 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46894 * 120.00002 * 3 2 1 7 7 C 1.38632 * 120.00162 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99879 * 180.02562 * 7 2 1 9 9 O 1.34806 * 120.00171 * 359.97438 * 7 2 1 10 10 C 1.35775 * 117.00058 * 174.95447 * 9 7 2 11 11 C 1.38734 * 120.08839 * 5.44046 * 10 9 7 12 12 C 1.38348 * 119.97565 * 180.25592 * 11 10 9 13 13 F 1.35099 * 119.92323 * 179.77382 * 12 11 10 14 14 C 1.38545 * 120.15381 * 359.74751 * 12 11 10 15 15 C 1.38200 * 120.17164 * 0.02562 * 14 12 11 16 16 C 1.38702 * 120.02125 * 0.02562 * 15 14 12 17 17 N 1.40134 * 120.07089 * 179.97438 * 16 15 14 18 18 C 1.34767 * 120.00425 * 34.58945 * 17 16 15 19 19 O 1.21597 * 120.00080 * 355.61518 * 18 17 16 20 20 N 1.34781 * 120.00210 * 175.61887 * 18 17 16 21 21 C 1.47420 * 125.64797 * 0.03619 * 20 18 17 22 22 C 1.54904 * 104.83184 * 204.09326 * 21 20 18 23 23 H 1.09006 * 111.00443 * 81.10677 * 22 21 20 24 24 O 1.42906 * 111.00368 * 204.91704 * 22 21 20 25 25 C 1.55399 * 101.67003 * 323.07462 * 22 21 20 26 26 H 1.08999 * 110.69659 * 277.04905 * 25 22 21 27 27 C 1.52998 * 110.85265 * 153.69514 * 25 22 21 28 28 O 1.42898 * 109.47201 * 180.08671 * 27 25 22 29 29 C 1.47020 * 125.64844 * 179.97438 * 20 18 17 30 30 H 0.97003 * 119.99888 * 359.97438 * 1 2 3 31 31 H 1.07999 * 120.01735 * 0.02562 * 11 10 9 32 32 H 1.07997 * 119.91669 * 179.97438 * 14 12 11 33 33 H 1.07991 * 119.99067 * 179.97438 * 15 14 12 34 34 H 0.97005 * 119.99734 * 214.58070 * 17 16 15 35 35 H 1.08998 * 110.36869 * 322.93384 * 21 20 18 36 36 H 1.09004 * 110.36611 * 85.14874 * 21 20 18 37 37 H 0.96703 * 113.99864 * 298.54721 * 24 22 21 38 38 H 1.09000 * 109.47683 * 300.09264 * 27 25 22 39 39 H 1.09003 * 109.46905 * 60.09184 * 27 25 22 40 40 H 0.96698 * 114.00338 * 180.02562 * 28 27 25 41 41 H 1.09004 * 109.88730 * 298.39549 * 29 20 18 42 42 H 1.09002 * 109.88220 * 59.40453 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.1035 1.6965 -1.2124 5 1 1.2847 2.7465 0.0006 6 1 3.1035 1.6964 1.2126 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2005 -0.0001 9 8 1.3349 -2.3681 -0.0005 10 6 2.0704 -3.5044 -0.1075 11 6 3.4562 -3.4395 -0.0968 12 6 4.2033 -4.5983 -0.2113 13 9 5.5527 -4.5335 -0.2054 14 6 3.5708 -5.8251 -0.3313 15 6 2.1907 -5.8974 -0.3379 16 6 1.4346 -4.7401 -0.2247 17 7 0.0352 -4.8121 -0.2318 18 6 -0.5882 -5.8662 0.3307 19 8 0.0632 -6.7926 0.7733 20 7 -1.9339 -5.8936 0.4027 21 6 -2.8423 -4.8435 -0.0926 22 6 -4.1385 -5.0166 0.7378 23 1 -4.0419 -4.5448 1.7157 24 8 -5.2705 -4.5020 0.0335 25 6 -4.2212 -6.5625 0.8730 26 1 -4.6771 -7.0028 -0.0138 27 6 -4.9925 -6.9584 2.1336 28 8 -5.0489 -8.3831 2.2297 29 6 -2.7388 -6.9763 0.9870 30 1 -0.4850 0.8401 0.0004 31 1 3.9516 -2.4845 -0.0030 32 1 4.1578 -6.7272 -0.4209 33 1 1.7008 -6.8551 -0.4321 34 1 -0.4849 -4.1031 -0.6415 35 1 -2.4111 -3.8572 0.0784 36 1 -3.0472 -4.9885 -1.1533 37 1 -5.2173 -3.5557 -0.1586 38 1 -4.4869 -6.5548 3.0108 39 1 -6.0047 -6.5575 2.0811 40 1 -5.5248 -8.7064 3.0069 41 1 -2.5690 -7.9024 0.4378 42 1 -2.4717 -7.1127 2.0349 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364316015.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:07 Heat of formation + Delta-G solvation = -157.867032 kcal Electronic energy + Delta-G solvation = -29681.787639 eV Core-core repulsion = 25156.853258 eV Total energy + Delta-G solvation = -4524.934381 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -48.25105 -40.57734 -39.38457 -38.31120 -36.83656 -36.41001 -35.46606 -34.10450 -32.43877 -31.80661 -29.42635 -28.65512 -28.30991 -25.81584 -25.45944 -23.20615 -22.33158 -21.61360 -20.62105 -19.76957 -18.37441 -18.35479 -17.90507 -17.48210 -17.31947 -16.72979 -15.96283 -15.49951 -15.25240 -15.21418 -14.97790 -14.95404 -14.55858 -14.32119 -13.98005 -13.75396 -13.68120 -13.49914 -13.31096 -13.07656 -12.83258 -12.71562 -12.30835 -12.14962 -11.82021 -11.69022 -11.44488 -11.34565 -11.00625 -10.91819 -10.75802 -10.59748 -10.47230 -10.25081 -9.87499 -9.78818 -9.47116 -8.98549 -8.64172 -7.87914 -7.11494 -6.63998 -4.21402 1.84026 2.11902 2.64942 3.05193 3.05765 3.07936 3.38860 3.62325 3.81842 3.87547 4.15686 4.33508 4.34966 4.57251 4.71964 4.84635 4.93051 4.94648 5.01063 5.10942 5.14584 5.29143 5.46981 5.48945 5.57862 5.65778 5.73120 5.78293 5.94450 6.01966 6.10410 6.28434 6.57559 6.71982 6.90105 6.91487 7.05711 7.15637 7.25133 7.31943 7.34064 7.65172 7.80778 8.15654 8.79419 8.83366 9.44153 10.53246 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009947 B = 0.003567 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2814.342237 B = 7848.314070 C =10366.076487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.044 3.956 3 Si 0.942 3.058 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.392 4.392 8 H 0.094 0.906 9 O -0.170 6.170 10 C 0.158 3.842 11 C -0.257 4.257 12 C 0.128 3.872 13 F -0.151 7.151 14 C -0.227 4.227 15 C -0.050 4.050 16 C 0.077 3.923 17 N -0.662 5.662 18 C 0.723 3.277 19 O -0.579 6.579 20 N -0.635 5.635 21 C 0.065 3.935 22 C 0.101 3.899 23 H 0.080 0.920 24 O -0.556 6.556 25 C -0.092 4.092 26 H 0.102 0.898 27 C 0.088 3.912 28 O -0.571 6.571 29 C 0.141 3.859 30 H 0.272 0.728 31 H 0.143 0.857 32 H 0.123 0.877 33 H 0.143 0.857 34 H 0.410 0.590 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.387 0.613 38 H 0.051 0.949 39 H 0.056 0.944 40 H 0.381 0.619 41 H 0.073 0.927 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.985 -7.904 1.435 12.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.161 4.161 3 Si 0.766 3.234 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.468 4.468 8 H 0.111 0.889 9 O -0.073 6.073 10 C 0.102 3.898 11 C -0.278 4.278 12 C 0.108 3.892 13 F -0.130 7.130 14 C -0.247 4.247 15 C -0.071 4.071 16 C -0.018 4.018 17 N -0.309 5.309 18 C 0.426 3.574 19 O -0.457 6.457 20 N -0.375 5.375 21 C -0.059 4.059 22 C 0.041 3.959 23 H 0.098 0.902 24 O -0.362 6.362 25 C -0.111 4.111 26 H 0.120 0.880 27 C 0.010 3.990 28 O -0.377 6.377 29 C 0.018 3.982 30 H 0.081 0.919 31 H 0.161 0.839 32 H 0.141 0.859 33 H 0.161 0.839 34 H 0.246 0.754 35 H 0.107 0.893 36 H 0.096 0.904 37 H 0.236 0.764 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.228 0.772 41 H 0.092 0.908 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.719 -8.909 1.277 13.246 hybrid contribution 0.387 1.939 0.320 2.003 sum -9.332 -6.970 1.597 11.757 Atomic orbital electron populations 1.69991 1.05932 1.28016 1.45720 1.25253 0.95906 0.98785 0.96131 0.85757 0.78772 0.79444 0.79423 1.19340 1.20196 1.19386 1.21308 0.91992 0.80448 1.53061 0.88890 1.83923 1.33902 1.11248 1.78195 1.18794 0.89489 0.87200 0.94365 1.20837 0.93362 0.98460 1.15175 1.17458 0.75945 0.94330 1.01442 1.91410 1.30129 1.97373 1.94103 1.20493 0.94589 0.95852 1.13764 1.20690 0.92170 0.97471 0.96735 1.16656 0.81120 0.91644 1.12384 1.42192 1.05214 1.23908 1.59562 1.15334 0.79918 0.83195 0.78947 1.90889 1.63321 1.37125 1.54347 1.47320 1.03425 1.22306 1.64409 1.23043 0.90630 0.93008 0.99232 1.22880 0.84665 0.93541 0.94792 0.90240 1.86478 1.41354 1.29751 1.78618 1.22250 0.95146 0.93941 0.99741 0.88024 1.22104 0.99131 0.81447 0.96329 1.86481 1.79970 1.20954 1.50292 1.21711 0.87170 0.90028 0.99307 0.91855 0.83941 0.85888 0.83938 0.75362 0.89329 0.90352 0.76409 0.93125 0.92618 0.77181 0.90820 0.91050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.81 13.67 55.48 0.76 -22.05 16 2 C 0.04 1.12 5.49 -17.52 -0.10 1.02 16 3 Si 0.94 19.34 29.55 -169.99 -5.02 14.32 16 4 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 5 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 6 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 7 C -0.39 -10.19 9.49 30.88 0.29 -9.90 16 8 H 0.09 2.28 5.20 -52.49 -0.27 2.00 16 9 O -0.17 -4.38 9.31 0.04 0.00 -4.38 16 10 C 0.16 3.63 6.66 -38.94 -0.26 3.37 16 11 C -0.26 -5.62 9.14 -39.36 -0.36 -5.98 16 12 C 0.13 2.57 7.29 -39.43 -0.29 2.29 16 13 F -0.15 -2.91 17.26 2.25 0.04 -2.87 16 14 C -0.23 -4.27 10.02 -39.48 -0.40 -4.66 16 15 C -0.05 -0.99 8.69 -39.42 -0.34 -1.33 16 16 C 0.08 1.62 6.33 -83.44 -0.53 1.09 16 17 N -0.66 -12.61 5.15 -14.07 -0.07 -12.68 16 18 C 0.72 13.34 8.34 -86.92 -0.72 12.61 16 19 O -0.58 -12.17 14.09 5.28 0.07 -12.09 16 20 N -0.63 -9.29 3.33 -176.24 -0.59 -9.88 16 21 C 0.06 0.76 6.27 -2.53 -0.02 0.75 16 22 C 0.10 1.00 3.89 -24.45 -0.10 0.91 16 23 H 0.08 0.75 8.05 -51.93 -0.42 0.33 16 24 O -0.56 -5.11 13.48 -35.23 -0.47 -5.58 16 25 C -0.09 -0.94 2.99 -88.65 -0.26 -1.21 16 26 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 27 C 0.09 0.75 6.37 37.16 0.24 0.99 16 28 O -0.57 -5.09 13.50 -35.23 -0.48 -5.57 16 29 C 0.14 1.80 6.31 -3.06 -0.02 1.78 16 30 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 31 H 0.14 3.09 5.64 -52.49 -0.30 2.79 16 32 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 33 H 0.14 2.76 6.19 -52.49 -0.32 2.43 16 34 H 0.41 7.45 7.09 -40.82 -0.29 7.16 16 35 H 0.09 1.11 7.37 -51.93 -0.38 0.73 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.39 2.21 9.11 45.56 0.42 2.62 16 38 H 0.05 0.40 8.06 -51.93 -0.42 -0.02 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.38 1.62 9.12 45.56 0.42 2.04 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.07 0.95 7.76 -51.93 -0.40 0.55 16 LS Contribution 360.47 15.07 5.43 5.43 Total: -1.00 -32.16 360.47 -6.41 -38.57 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -3.22 Total: 15.04 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -2.86 Total: 1.73 kcal Atomic # 7 Polarization: -44.71 SS G_CDS: 0.10 Total: -44.61 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -0.88 Total: -27.62 kcal Atomic # 9 Polarization: -2.91 SS G_CDS: 0.04 Total: -2.87 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.02 Total: 14.32 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.16 -6.41 -38.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364316015.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.293 kcal (2) G-P(sol) polarization free energy of solvation -32.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds