Wall clock time and date at job start Sat Apr 11 2020 05:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31571 * 1 3 3 Si 1.86807 * 119.99871 * 2 1 4 4 H 1.48497 * 109.47350 * 239.99921 * 3 2 1 5 5 H 1.48499 * 109.46947 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46894 * 120.00002 * 3 2 1 7 7 C 1.38632 * 120.00162 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99879 * 180.02562 * 7 2 1 9 9 O 1.34806 * 120.00171 * 359.97438 * 7 2 1 10 10 C 1.35775 * 117.00058 * 174.95447 * 9 7 2 11 11 C 1.38734 * 120.08839 * 5.44046 * 10 9 7 12 12 C 1.38348 * 119.97565 * 180.25592 * 11 10 9 13 13 F 1.35099 * 119.92323 * 179.77382 * 12 11 10 14 14 C 1.38545 * 120.15381 * 359.74751 * 12 11 10 15 15 C 1.38200 * 120.17164 * 0.02562 * 14 12 11 16 16 C 1.38702 * 120.02125 * 0.02562 * 15 14 12 17 17 N 1.40134 * 120.07089 * 179.97438 * 16 15 14 18 18 C 1.34767 * 120.00425 * 34.58945 * 17 16 15 19 19 O 1.21597 * 120.00080 * 355.61518 * 18 17 16 20 20 N 1.34781 * 120.00210 * 175.61887 * 18 17 16 21 21 C 1.47420 * 125.64797 * 0.03619 * 20 18 17 22 22 C 1.54904 * 104.83184 * 204.09326 * 21 20 18 23 23 H 1.09006 * 111.00443 * 81.10677 * 22 21 20 24 24 O 1.42906 * 111.00368 * 204.91704 * 22 21 20 25 25 C 1.55399 * 101.67003 * 323.07462 * 22 21 20 26 26 H 1.08999 * 110.69659 * 277.04905 * 25 22 21 27 27 C 1.52998 * 110.85265 * 153.69514 * 25 22 21 28 28 O 1.42898 * 109.47201 * 180.08671 * 27 25 22 29 29 C 1.47020 * 125.64844 * 179.97438 * 20 18 17 30 30 H 0.97003 * 119.99888 * 359.97438 * 1 2 3 31 31 H 1.07999 * 120.01735 * 0.02562 * 11 10 9 32 32 H 1.07997 * 119.91669 * 179.97438 * 14 12 11 33 33 H 1.07991 * 119.99067 * 179.97438 * 15 14 12 34 34 H 0.97005 * 119.99734 * 214.58070 * 17 16 15 35 35 H 1.08998 * 110.36869 * 322.93384 * 21 20 18 36 36 H 1.09004 * 110.36611 * 85.14874 * 21 20 18 37 37 H 0.96703 * 113.99864 * 298.54721 * 24 22 21 38 38 H 1.09000 * 109.47683 * 300.09264 * 27 25 22 39 39 H 1.09003 * 109.46905 * 60.09184 * 27 25 22 40 40 H 0.96698 * 114.00338 * 180.02562 * 28 27 25 41 41 H 1.09004 * 109.88730 * 298.39549 * 29 20 18 42 42 H 1.09002 * 109.88220 * 59.40453 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.1035 1.6965 -1.2124 5 1 1.2847 2.7465 0.0006 6 1 3.1035 1.6964 1.2126 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2005 -0.0001 9 8 1.3349 -2.3681 -0.0005 10 6 2.0704 -3.5044 -0.1075 11 6 3.4562 -3.4395 -0.0968 12 6 4.2033 -4.5983 -0.2113 13 9 5.5527 -4.5335 -0.2054 14 6 3.5708 -5.8251 -0.3313 15 6 2.1907 -5.8974 -0.3379 16 6 1.4346 -4.7401 -0.2247 17 7 0.0352 -4.8121 -0.2318 18 6 -0.5882 -5.8662 0.3307 19 8 0.0632 -6.7926 0.7733 20 7 -1.9339 -5.8936 0.4027 21 6 -2.8423 -4.8435 -0.0926 22 6 -4.1385 -5.0166 0.7378 23 1 -4.0419 -4.5448 1.7157 24 8 -5.2705 -4.5020 0.0335 25 6 -4.2212 -6.5625 0.8730 26 1 -4.6771 -7.0028 -0.0138 27 6 -4.9925 -6.9584 2.1336 28 8 -5.0489 -8.3831 2.2297 29 6 -2.7388 -6.9763 0.9870 30 1 -0.4850 0.8401 0.0004 31 1 3.9516 -2.4845 -0.0030 32 1 4.1578 -6.7272 -0.4209 33 1 1.7008 -6.8551 -0.4321 34 1 -0.4849 -4.1031 -0.6415 35 1 -2.4111 -3.8572 0.0784 36 1 -3.0472 -4.9885 -1.1533 37 1 -5.2173 -3.5557 -0.1586 38 1 -4.4869 -6.5548 3.0108 39 1 -6.0047 -6.5575 2.0811 40 1 -5.5248 -8.7064 3.0069 41 1 -2.5690 -7.9024 0.4378 42 1 -2.4717 -7.1127 2.0349 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364316015.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:04 Heat of formation + Delta-G solvation = -183.716710 kcal Electronic energy + Delta-G solvation = -29682.908565 eV Core-core repulsion = 25156.853258 eV Total energy + Delta-G solvation = -4526.055307 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -49.83590 -41.95859 -40.80309 -39.63126 -38.05272 -37.50924 -36.48762 -35.65235 -34.30717 -32.82705 -31.09175 -29.88067 -29.62139 -27.42980 -26.72593 -24.34543 -23.82280 -23.16841 -21.56845 -21.11320 -20.14391 -19.80476 -19.11247 -18.59781 -18.22719 -18.10538 -17.19840 -16.97594 -16.93638 -16.58959 -16.34571 -16.12158 -15.96723 -15.60029 -15.43066 -15.27021 -15.00266 -14.84418 -14.63091 -14.22713 -14.01779 -13.85785 -13.71520 -13.55782 -13.43928 -13.02847 -12.74136 -12.58417 -12.36948 -12.17507 -12.16031 -11.85427 -11.65985 -11.47451 -11.19374 -11.01858 -10.89514 -10.81632 -9.88646 -9.54935 -8.76938 -8.50882 -6.16767 0.18659 0.45114 1.34334 1.38340 1.45948 1.51125 1.92283 2.14455 2.66013 2.68722 2.94990 3.04980 3.15369 3.20971 3.36842 3.44292 3.79197 3.93161 3.95987 4.13480 4.14828 4.19402 4.32513 4.35218 4.49465 4.53647 4.56771 4.72254 4.72855 4.80017 4.92450 4.95838 5.08056 5.16167 5.20903 5.28721 5.35586 5.53651 5.83395 5.93515 6.03529 6.71357 6.75685 6.91793 6.93682 7.32674 7.61721 8.69231 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009947 B = 0.003567 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2814.342237 B = 7848.314070 C =10366.076487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C -0.005 4.005 3 Si 1.009 2.991 4 H -0.261 1.261 5 H -0.269 1.269 6 H -0.263 1.263 7 C -0.419 4.419 8 H 0.098 0.902 9 O -0.201 6.201 10 C 0.133 3.867 11 C -0.263 4.263 12 C 0.124 3.876 13 F -0.144 7.144 14 C -0.203 4.203 15 C -0.052 4.052 16 C 0.075 3.925 17 N -0.662 5.662 18 C 0.719 3.281 19 O -0.608 6.608 20 N -0.630 5.630 21 C 0.062 3.938 22 C 0.114 3.886 23 H 0.088 0.912 24 O -0.560 6.560 25 C -0.085 4.085 26 H 0.098 0.902 27 C 0.092 3.908 28 O -0.590 6.590 29 C 0.139 3.861 30 H 0.275 0.725 31 H 0.138 0.862 32 H 0.158 0.842 33 H 0.150 0.850 34 H 0.412 0.588 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.403 0.597 38 H 0.058 0.942 39 H 0.069 0.931 40 H 0.401 0.599 41 H 0.066 0.934 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.209 -8.315 1.569 13.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.205 4.205 3 Si 0.829 3.171 4 H -0.185 1.185 5 H -0.193 1.193 6 H -0.188 1.188 7 C -0.494 4.494 8 H 0.116 0.884 9 O -0.106 6.106 10 C 0.079 3.921 11 C -0.283 4.283 12 C 0.104 3.896 13 F -0.122 7.122 14 C -0.223 4.223 15 C -0.072 4.072 16 C -0.020 4.020 17 N -0.309 5.309 18 C 0.422 3.578 19 O -0.488 6.488 20 N -0.369 5.369 21 C -0.061 4.061 22 C 0.054 3.946 23 H 0.106 0.894 24 O -0.368 6.368 25 C -0.104 4.104 26 H 0.116 0.884 27 C 0.014 3.986 28 O -0.399 6.399 29 C 0.017 3.983 30 H 0.084 0.916 31 H 0.156 0.844 32 H 0.176 0.824 33 H 0.168 0.832 34 H 0.249 0.751 35 H 0.097 0.903 36 H 0.106 0.894 37 H 0.254 0.746 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.251 0.749 41 H 0.084 0.916 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.979 -9.344 1.414 13.744 hybrid contribution 0.465 1.838 0.258 1.913 sum -9.514 -7.506 1.672 12.233 Atomic orbital electron populations 1.70092 1.07394 1.29032 1.47302 1.26318 0.96856 1.01892 0.95429 0.84769 0.77624 0.75000 0.79686 1.18527 1.19324 1.18786 1.21710 0.92555 0.81135 1.54047 0.88431 1.83902 1.34658 1.11777 1.80263 1.19106 0.90153 0.87290 0.95534 1.20921 0.93218 0.99141 1.15066 1.17440 0.76258 0.94183 1.01706 1.91430 1.29421 1.97341 1.94041 1.20865 0.94382 0.96577 1.10468 1.20855 0.92605 0.97190 0.96566 1.16909 0.82262 0.91465 1.11380 1.42188 1.04676 1.24257 1.59810 1.15451 0.81057 0.82550 0.78766 1.90848 1.64451 1.37975 1.55574 1.47354 1.02532 1.23464 1.63517 1.23221 0.91037 0.91650 1.00196 1.22719 0.83733 0.93439 0.94698 0.89407 1.86453 1.40551 1.31329 1.78491 1.22210 0.93292 0.94115 1.00783 0.88363 1.22063 0.99554 0.81546 0.95461 1.86429 1.80602 1.21075 1.51830 1.21839 0.88547 0.89294 0.98623 0.91551 0.84405 0.82440 0.83209 0.75140 0.90278 0.89440 0.74578 0.92398 0.91240 0.74901 0.91552 0.91565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.86 13.67 21.61 0.30 -48.56 16 2 C 0.00 -0.25 5.49 84.83 0.47 0.22 16 3 Si 1.01 39.73 29.55 68.60 2.03 41.75 16 4 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 5 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 6 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 7 C -0.42 -22.38 9.49 67.91 0.64 -21.73 16 8 H 0.10 4.91 5.20 -2.91 -0.02 4.89 16 9 O -0.20 -10.75 9.31 -22.77 -0.21 -10.97 16 10 C 0.13 6.27 6.66 22.68 0.15 6.42 16 11 C -0.26 -11.53 9.14 22.41 0.20 -11.32 16 12 C 0.12 4.82 7.29 22.37 0.16 4.98 16 13 F -0.14 -5.24 17.26 44.97 0.78 -4.46 16 14 C -0.20 -7.20 10.02 22.33 0.22 -6.97 16 15 C -0.05 -1.98 8.69 22.37 0.19 -1.79 16 16 C 0.08 3.20 6.33 38.22 0.24 3.45 16 17 N -0.66 -25.71 5.15 -316.70 -1.63 -27.34 16 18 C 0.72 26.73 8.34 179.06 1.49 28.22 16 19 O -0.61 -25.59 14.09 -4.02 -0.06 -25.65 16 20 N -0.63 -18.41 3.33 -829.76 -2.76 -21.17 16 21 C 0.06 1.44 6.27 86.85 0.54 1.99 16 22 C 0.11 2.10 3.89 32.07 0.12 2.22 16 23 H 0.09 1.51 8.05 -2.38 -0.02 1.49 16 24 O -0.56 -9.18 13.48 -148.98 -2.01 -11.19 16 25 C -0.08 -1.63 2.99 -9.52 -0.03 -1.66 16 26 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 27 C 0.09 1.39 6.37 71.98 0.46 1.85 16 28 O -0.59 -9.51 13.50 -148.98 -2.01 -11.52 16 29 C 0.14 3.49 6.31 86.73 0.55 4.04 16 30 H 0.28 13.72 8.31 -92.71 -0.77 12.95 16 31 H 0.14 6.09 5.64 -2.91 -0.02 6.07 16 32 H 0.16 4.51 8.06 -2.91 -0.02 4.49 16 33 H 0.15 5.62 6.19 -2.92 -0.02 5.60 16 34 H 0.41 15.50 7.09 -92.70 -0.66 14.84 16 35 H 0.08 2.01 7.37 -2.39 -0.02 1.99 16 36 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.40 3.85 9.11 -74.05 -0.67 3.17 16 38 H 0.06 0.80 8.06 -2.39 -0.02 0.78 16 39 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.40 2.65 9.12 -74.06 -0.68 1.97 16 41 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.07 1.73 7.76 -2.39 -0.02 1.72 16 Total: -1.00 -69.56 360.47 -1.03 -70.59 By element: Atomic # 1 Polarization: 39.48 SS G_CDS: -0.88 Total: 38.60 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: 5.43 Total: 9.91 kcal Atomic # 7 Polarization: -92.98 SS G_CDS: -4.09 Total: -97.07 kcal Atomic # 8 Polarization: -55.03 SS G_CDS: -4.29 Total: -59.32 kcal Atomic # 9 Polarization: -5.24 SS G_CDS: 0.78 Total: -4.46 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 2.03 Total: 41.75 kcal Total: -69.56 -1.03 -70.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364316015.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.123 kcal (2) G-P(sol) polarization free energy of solvation -69.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds