Wall clock time and date at job start Sat Apr 11 2020 05:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31569 * 1 3 3 Si 1.86797 * 120.00179 * 2 1 4 4 H 1.48504 * 109.47559 * 270.00340 * 3 2 1 5 5 H 1.48501 * 109.47115 * 30.00389 * 3 2 1 6 6 H 1.48499 * 109.47332 * 150.00228 * 3 2 1 7 7 C 1.38641 * 120.00019 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99796 * 359.97438 * 7 2 1 9 9 O 1.34805 * 119.99642 * 179.97438 * 7 2 1 10 10 C 1.35786 * 116.99297 * 174.95315 * 9 7 2 11 11 C 1.38733 * 120.08827 * 5.43156 * 10 9 7 12 12 C 1.38350 * 119.97397 * 179.72528 * 11 10 9 13 13 F 1.35098 * 119.92402 * 180.27765 * 12 11 10 14 14 C 1.38537 * 120.15127 * 0.29705 * 12 11 10 15 15 C 1.38200 * 120.17914 * 359.95978 * 14 12 11 16 16 C 1.38700 * 120.01753 * 0.03880 * 15 14 12 17 17 N 1.40130 * 120.07579 * 179.97438 * 16 15 14 18 18 C 1.34778 * 119.99972 * 325.41116 * 17 16 15 19 19 O 1.21595 * 120.00307 * 4.36634 * 18 17 16 20 20 N 1.34784 * 120.00020 * 184.36967 * 18 17 16 21 21 C 1.46498 * 119.99900 * 179.97438 * 20 18 17 22 22 H 1.09000 * 110.67054 * 31.77268 * 21 20 18 23 23 C 1.54895 * 110.75172 * 154.99938 * 21 20 18 24 24 C 1.54270 * 104.19310 * 156.25822 * 23 21 20 25 25 H 1.08999 * 110.02843 * 95.67286 * 24 23 21 26 26 O 1.42902 * 110.03227 * 217.05922 * 24 23 21 27 27 C 1.53877 * 106.59915 * 336.39030 * 24 23 21 28 28 H 1.09000 * 110.03035 * 119.28320 * 27 24 23 29 29 O 1.42896 * 110.03510 * 240.66580 * 27 24 23 30 30 C 1.54265 * 106.59788 * 0.02562 * 27 24 23 31 31 H 0.97002 * 120.00126 * 359.97438 * 1 2 3 32 32 H 1.07998 * 120.01407 * 359.97438 * 11 10 9 33 33 H 1.08003 * 119.91292 * 179.97438 * 14 12 11 34 34 H 1.07990 * 119.99474 * 180.02562 * 15 14 12 35 35 H 0.97004 * 120.00322 * 145.40722 * 17 16 15 36 36 H 0.96998 * 119.99509 * 359.97438 * 20 18 17 37 37 H 1.08997 * 110.48596 * 274.93830 * 23 21 20 38 38 H 1.08999 * 110.48695 * 37.45147 * 23 21 20 39 39 H 0.96694 * 114.00009 * 180.02562 * 26 24 23 40 40 H 0.96700 * 113.99633 * 298.54937 * 29 27 24 41 41 H 1.08996 * 110.48447 * 264.93144 * 30 27 24 42 42 H 1.08999 * 110.48713 * 142.28892 * 30 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4972 2.0465 -1.4001 5 1 1.4472 2.6526 0.7001 6 1 3.5473 1.4401 0.7000 7 6 2.0089 -1.2007 -0.0005 8 1 1.4689 -2.1359 -0.0005 9 8 3.3570 -1.2006 -0.0011 10 6 3.9734 -2.4058 0.1049 11 6 3.2243 -3.5735 0.0939 12 6 3.8553 -4.8005 0.1963 13 9 3.1253 -5.9371 0.1799 14 6 5.2339 -4.8661 0.3160 15 6 5.9858 -3.7067 0.3329 16 6 5.3607 -2.4728 0.2307 17 7 6.1219 -1.2963 0.2483 18 6 7.2347 -1.2250 1.0052 19 8 7.6224 -2.2058 1.6104 20 7 7.9180 -0.0663 1.0914 21 6 9.1273 0.0114 1.9146 22 1 9.6481 -0.9462 1.9247 23 6 10.0622 1.1392 1.4114 24 6 10.9114 1.5057 2.6462 25 1 11.8595 0.9686 2.6199 26 8 11.1479 2.9146 2.6770 27 6 10.0982 1.0796 3.8811 28 1 10.6518 0.3357 4.4541 29 8 9.8174 2.2173 4.6988 30 6 8.7836 0.4685 3.3537 31 1 -0.4850 0.8401 0.0004 32 1 2.1494 -3.5249 0.0015 33 1 5.7225 -5.8260 0.3960 34 1 7.0603 -3.7613 0.4259 35 1 5.8479 -0.5333 -0.2844 36 1 7.6090 0.7160 0.6083 37 1 10.6988 0.7756 0.6048 38 1 9.4792 1.9979 1.0785 39 1 11.6776 3.2081 3.4308 40 1 10.6061 2.6579 5.0437 41 1 7.9939 1.2196 3.3363 42 1 8.4871 -0.3841 3.9647 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365491404.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:13 Heat of formation + Delta-G solvation = -167.406655 kcal Electronic energy + Delta-G solvation = -29423.674098 eV Core-core repulsion = 24898.326048 eV Total energy + Delta-G solvation = -4525.348050 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -48.28252 -40.59754 -39.74066 -38.82238 -36.72205 -35.82189 -35.81513 -34.20659 -32.75972 -32.49954 -29.59405 -28.56191 -28.48167 -26.52966 -25.41641 -22.78949 -21.76113 -21.17848 -21.04964 -20.53540 -18.62145 -18.52004 -18.21314 -17.79173 -16.91443 -16.64182 -16.51073 -15.80048 -15.62321 -15.37099 -15.03794 -14.88537 -14.64529 -14.14397 -14.01566 -13.80573 -13.56727 -13.41827 -13.34888 -13.26307 -12.85978 -12.45084 -12.37546 -12.15279 -11.98946 -11.86505 -11.74170 -11.42546 -11.25052 -10.97841 -10.80185 -10.63738 -10.46649 -10.01501 -9.98634 -9.77677 -9.55242 -9.16398 -9.00591 -7.97673 -7.24644 -6.54350 -4.21739 1.75271 2.01938 2.63132 3.10942 3.14204 3.24030 3.26188 3.62907 3.85983 4.07937 4.09088 4.21863 4.24260 4.37757 4.53966 4.64318 4.81408 4.94544 4.96468 4.99460 5.02448 5.11679 5.28368 5.49435 5.53023 5.61912 5.68739 5.83514 5.90945 5.94576 6.05845 6.37361 6.47635 6.62781 6.81385 6.85880 6.97503 6.97932 7.10660 7.35435 7.45502 7.65026 7.87291 8.07201 8.67526 8.78699 9.33605 10.52819 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010218 B = 0.003344 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2739.720085 B = 8371.613361 C =10528.758580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.066 3.934 3 Si 0.905 3.095 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.260 1.260 7 C -0.391 4.391 8 H 0.109 0.891 9 O -0.209 6.209 10 C 0.165 3.835 11 C -0.246 4.246 12 C 0.129 3.871 13 F -0.149 7.149 14 C -0.221 4.221 15 C -0.051 4.051 16 C 0.078 3.922 17 N -0.667 5.667 18 C 0.706 3.294 19 O -0.581 6.581 20 N -0.738 5.738 21 C 0.166 3.834 22 H 0.105 0.895 23 C -0.123 4.123 24 C 0.071 3.929 25 H 0.067 0.933 26 O -0.550 6.550 27 C 0.069 3.931 28 H 0.066 0.934 29 O -0.548 6.548 30 C -0.130 4.130 31 H 0.282 0.718 32 H 0.149 0.851 33 H 0.125 0.875 34 H 0.144 0.856 35 H 0.408 0.592 36 H 0.399 0.601 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.373 0.627 40 H 0.371 0.629 41 H 0.085 0.915 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.088 3.389 3.712 22.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.138 4.138 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.184 1.184 7 C -0.466 4.466 8 H 0.126 0.874 9 O -0.113 6.113 10 C 0.110 3.890 11 C -0.267 4.267 12 C 0.109 3.891 13 F -0.128 7.128 14 C -0.242 4.242 15 C -0.071 4.071 16 C -0.017 4.017 17 N -0.314 5.314 18 C 0.407 3.593 19 O -0.458 6.458 20 N -0.393 5.393 21 C 0.059 3.941 22 H 0.123 0.877 23 C -0.161 4.161 24 C 0.011 3.989 25 H 0.085 0.915 26 O -0.356 6.356 27 C 0.009 3.991 28 H 0.084 0.916 29 O -0.354 6.354 30 C -0.169 4.169 31 H 0.092 0.908 32 H 0.167 0.833 33 H 0.143 0.857 34 H 0.162 0.838 35 H 0.243 0.757 36 H 0.233 0.767 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.221 0.779 40 H 0.218 0.782 41 H 0.104 0.896 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 21.313 2.674 3.563 21.774 hybrid contribution 0.463 1.401 0.240 1.495 sum 21.776 4.075 3.803 22.478 Atomic orbital electron populations 1.69642 1.05583 1.28719 1.46934 1.24468 0.95036 0.98810 0.95501 0.86196 0.80377 0.81495 0.78880 1.19734 1.20639 1.18416 1.20762 0.76397 0.96862 1.52616 0.87363 1.83508 1.23077 1.24729 1.80032 1.18490 0.89343 0.85853 0.95293 1.20967 1.02100 0.90054 1.13536 1.17469 0.89093 0.81299 1.01266 1.91426 1.77930 1.49396 1.94014 1.20547 0.91584 0.99027 1.12997 1.20672 1.00385 0.89005 0.97066 1.16637 0.86527 0.85690 1.12830 1.42180 1.25340 1.16245 1.47607 1.15854 0.80324 0.83492 0.79613 1.90883 1.69494 1.35252 1.50220 1.44986 1.28778 1.12279 1.53218 1.21541 0.84468 0.99252 0.88809 0.87710 1.22582 0.98015 0.98800 0.96748 1.23079 0.97577 0.82465 0.95790 0.91502 1.86622 1.76130 1.21973 1.50844 1.23129 0.97188 0.87823 0.90939 0.91605 1.86668 1.35680 1.44575 1.68458 1.22790 0.96743 1.01167 0.96237 0.90812 0.83343 0.85746 0.83798 0.75732 0.76652 0.89925 0.89368 0.77918 0.78213 0.89605 0.89938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.32 13.96 55.48 0.77 -23.55 16 2 C 0.07 1.77 5.49 -17.52 -0.10 1.67 16 3 Si 0.91 20.26 28.62 -169.99 -4.86 15.39 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.26 -5.69 7.11 56.52 0.40 -5.28 16 7 C -0.39 -10.45 9.95 30.88 0.31 -10.14 16 8 H 0.11 3.00 5.44 -52.49 -0.29 2.72 16 9 O -0.21 -5.04 8.14 0.01 0.00 -5.04 16 10 C 0.16 3.62 6.66 -38.94 -0.26 3.36 16 11 C -0.25 -5.31 9.14 -39.36 -0.36 -5.67 16 12 C 0.13 2.52 7.29 -39.43 -0.29 2.23 16 13 F -0.15 -2.85 17.26 2.25 0.04 -2.81 16 14 C -0.22 -3.94 10.02 -39.48 -0.40 -4.33 16 15 C -0.05 -0.92 8.70 -39.42 -0.34 -1.26 16 16 C 0.08 1.51 6.33 -83.44 -0.53 0.98 16 17 N -0.67 -11.17 5.20 -14.07 -0.07 -11.24 16 18 C 0.71 11.13 8.41 -86.91 -0.73 10.40 16 19 O -0.58 -10.61 13.40 5.28 0.07 -10.54 16 20 N -0.74 -8.70 5.18 -56.74 -0.29 -8.99 16 21 C 0.17 1.67 3.27 -65.95 -0.22 1.45 16 22 H 0.10 1.11 7.55 -51.93 -0.39 0.71 16 23 C -0.12 -0.99 6.18 -25.07 -0.16 -1.15 16 24 C 0.07 0.50 4.26 -25.61 -0.11 0.39 16 25 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 26 O -0.55 -4.10 12.59 -56.87 -0.72 -4.81 16 27 C 0.07 0.56 4.26 -25.61 -0.11 0.45 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 O -0.55 -4.79 12.63 -56.87 -0.72 -5.51 16 30 C -0.13 -1.41 6.24 -25.09 -0.16 -1.57 16 31 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 32 H 0.15 3.36 5.64 -52.49 -0.30 3.07 16 33 H 0.12 1.90 8.06 -52.48 -0.42 1.47 16 34 H 0.14 2.51 6.19 -52.49 -0.32 2.18 16 35 H 0.41 6.18 8.58 -40.82 -0.35 5.83 16 36 H 0.40 3.93 8.58 -40.82 -0.35 3.58 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.09 0.79 7.95 -51.93 -0.41 0.37 16 39 H 0.37 1.05 7.96 45.56 0.36 1.41 16 40 H 0.37 1.36 7.93 45.56 0.36 1.72 16 41 H 0.09 1.09 8.08 -51.93 -0.42 0.67 16 42 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 357.35 15.07 5.39 5.39 Total: -1.00 -33.01 357.35 -7.19 -40.20 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -3.36 Total: 14.71 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -3.44 Total: -3.18 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: 0.41 Total: -43.78 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -1.36 Total: -25.91 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.04 Total: -2.81 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -4.86 Total: 15.39 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.01 -7.19 -40.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365491404.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.210 kcal (2) G-P(sol) polarization free energy of solvation -33.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds