Wall clock time and date at job start Sat Apr 11 2020 05:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31569 * 1 3 3 Si 1.86797 * 120.00179 * 2 1 4 4 H 1.48504 * 109.47559 * 270.00340 * 3 2 1 5 5 H 1.48501 * 109.47115 * 30.00389 * 3 2 1 6 6 H 1.48499 * 109.47332 * 150.00228 * 3 2 1 7 7 C 1.38641 * 120.00019 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99796 * 359.97438 * 7 2 1 9 9 O 1.34805 * 119.99642 * 179.97438 * 7 2 1 10 10 C 1.35786 * 116.99297 * 174.95315 * 9 7 2 11 11 C 1.38733 * 120.08827 * 5.43156 * 10 9 7 12 12 C 1.38350 * 119.97397 * 179.72528 * 11 10 9 13 13 F 1.35098 * 119.92402 * 180.27765 * 12 11 10 14 14 C 1.38537 * 120.15127 * 0.29705 * 12 11 10 15 15 C 1.38200 * 120.17914 * 359.95978 * 14 12 11 16 16 C 1.38700 * 120.01753 * 0.03880 * 15 14 12 17 17 N 1.40130 * 120.07579 * 179.97438 * 16 15 14 18 18 C 1.34778 * 119.99972 * 325.41116 * 17 16 15 19 19 O 1.21595 * 120.00307 * 4.36634 * 18 17 16 20 20 N 1.34784 * 120.00020 * 184.36967 * 18 17 16 21 21 C 1.46498 * 119.99900 * 179.97438 * 20 18 17 22 22 H 1.09000 * 110.67054 * 31.77268 * 21 20 18 23 23 C 1.54895 * 110.75172 * 154.99938 * 21 20 18 24 24 C 1.54270 * 104.19310 * 156.25822 * 23 21 20 25 25 H 1.08999 * 110.02843 * 95.67286 * 24 23 21 26 26 O 1.42902 * 110.03227 * 217.05922 * 24 23 21 27 27 C 1.53877 * 106.59915 * 336.39030 * 24 23 21 28 28 H 1.09000 * 110.03035 * 119.28320 * 27 24 23 29 29 O 1.42896 * 110.03510 * 240.66580 * 27 24 23 30 30 C 1.54265 * 106.59788 * 0.02562 * 27 24 23 31 31 H 0.97002 * 120.00126 * 359.97438 * 1 2 3 32 32 H 1.07998 * 120.01407 * 359.97438 * 11 10 9 33 33 H 1.08003 * 119.91292 * 179.97438 * 14 12 11 34 34 H 1.07990 * 119.99474 * 180.02562 * 15 14 12 35 35 H 0.97004 * 120.00322 * 145.40722 * 17 16 15 36 36 H 0.96998 * 119.99509 * 359.97438 * 20 18 17 37 37 H 1.08997 * 110.48596 * 274.93830 * 23 21 20 38 38 H 1.08999 * 110.48695 * 37.45147 * 23 21 20 39 39 H 0.96694 * 114.00009 * 180.02562 * 26 24 23 40 40 H 0.96700 * 113.99633 * 298.54937 * 29 27 24 41 41 H 1.08996 * 110.48447 * 264.93144 * 30 27 24 42 42 H 1.08999 * 110.48713 * 142.28892 * 30 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4972 2.0465 -1.4001 5 1 1.4472 2.6526 0.7001 6 1 3.5473 1.4401 0.7000 7 6 2.0089 -1.2007 -0.0005 8 1 1.4689 -2.1359 -0.0005 9 8 3.3570 -1.2006 -0.0011 10 6 3.9734 -2.4058 0.1049 11 6 3.2243 -3.5735 0.0939 12 6 3.8553 -4.8005 0.1963 13 9 3.1253 -5.9371 0.1799 14 6 5.2339 -4.8661 0.3160 15 6 5.9858 -3.7067 0.3329 16 6 5.3607 -2.4728 0.2307 17 7 6.1219 -1.2963 0.2483 18 6 7.2347 -1.2250 1.0052 19 8 7.6224 -2.2058 1.6104 20 7 7.9180 -0.0663 1.0914 21 6 9.1273 0.0114 1.9146 22 1 9.6481 -0.9462 1.9247 23 6 10.0622 1.1392 1.4114 24 6 10.9114 1.5057 2.6462 25 1 11.8595 0.9686 2.6199 26 8 11.1479 2.9146 2.6770 27 6 10.0982 1.0796 3.8811 28 1 10.6518 0.3357 4.4541 29 8 9.8174 2.2173 4.6988 30 6 8.7836 0.4685 3.3537 31 1 -0.4850 0.8401 0.0004 32 1 2.1494 -3.5249 0.0015 33 1 5.7225 -5.8260 0.3960 34 1 7.0603 -3.7613 0.4259 35 1 5.8479 -0.5333 -0.2844 36 1 7.6090 0.7160 0.6083 37 1 10.6988 0.7756 0.6048 38 1 9.4792 1.9979 1.0785 39 1 11.6776 3.2081 3.4308 40 1 10.6061 2.6579 5.0437 41 1 7.9939 1.2196 3.3363 42 1 8.4871 -0.3841 3.9647 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365491404.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:12 Heat of formation + Delta-G solvation = -194.062741 kcal Electronic energy + Delta-G solvation = -29424.829993 eV Core-core repulsion = 24898.326048 eV Total energy + Delta-G solvation = -4526.503945 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.85254 -41.88054 -40.82424 -40.05020 -38.25512 -36.77661 -36.37115 -35.61322 -34.48451 -33.70432 -31.22465 -30.02637 -29.17691 -27.50661 -27.16632 -24.25095 -23.33006 -22.24496 -21.93389 -21.40232 -20.16273 -19.82681 -19.42489 -19.13130 -18.25181 -17.43432 -17.18660 -17.05765 -16.97360 -16.73916 -16.59581 -16.23479 -15.88536 -15.66948 -15.53754 -15.29276 -15.01978 -14.81838 -14.27200 -14.22033 -14.00926 -13.87077 -13.63915 -13.55977 -13.11138 -12.76187 -12.65949 -12.55759 -12.48734 -12.36920 -12.19139 -12.05857 -11.67290 -11.36738 -11.20219 -11.07460 -10.93811 -10.52474 -10.19176 -9.61812 -8.82332 -8.52991 -6.26947 0.16303 0.40439 1.31826 1.36570 1.48243 1.50462 1.99564 2.24678 2.62245 2.75751 2.95233 3.02798 3.23821 3.28878 3.37675 3.58257 3.67744 3.90720 3.99331 4.14788 4.18736 4.27266 4.28499 4.38349 4.41733 4.53473 4.70945 4.86416 4.87805 4.99709 5.00741 5.10560 5.12335 5.17475 5.28545 5.45935 5.47946 5.60331 5.80405 5.89271 6.08670 6.67237 6.78971 6.89281 7.03269 7.37627 7.46925 8.58029 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010218 B = 0.003344 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2739.720085 B = 8371.613361 C =10528.758580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.014 3.986 3 Si 0.970 3.030 4 H -0.258 1.258 5 H -0.276 1.276 6 H -0.253 1.253 7 C -0.401 4.401 8 H 0.080 0.920 9 O -0.221 6.221 10 C 0.139 3.861 11 C -0.257 4.257 12 C 0.118 3.882 13 F -0.146 7.146 14 C -0.192 4.192 15 C -0.049 4.049 16 C 0.090 3.910 17 N -0.669 5.669 18 C 0.706 3.294 19 O -0.605 6.605 20 N -0.723 5.723 21 C 0.165 3.835 22 H 0.105 0.895 23 C -0.119 4.119 24 C 0.078 3.922 25 H 0.095 0.905 26 O -0.569 6.569 27 C 0.073 3.927 28 H 0.085 0.915 29 O -0.572 6.572 30 C -0.135 4.135 31 H 0.286 0.714 32 H 0.126 0.874 33 H 0.162 0.838 34 H 0.161 0.839 35 H 0.415 0.585 36 H 0.410 0.590 37 H 0.099 0.901 38 H 0.079 0.921 39 H 0.393 0.607 40 H 0.392 0.608 41 H 0.062 0.938 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.084 3.896 3.914 26.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.186 4.186 3 Si 0.792 3.208 4 H -0.183 1.183 5 H -0.201 1.201 6 H -0.177 1.177 7 C -0.477 4.477 8 H 0.098 0.902 9 O -0.128 6.128 10 C 0.087 3.913 11 C -0.278 4.278 12 C 0.098 3.902 13 F -0.125 7.125 14 C -0.211 4.211 15 C -0.070 4.070 16 C -0.005 4.005 17 N -0.316 5.316 18 C 0.407 3.593 19 O -0.485 6.485 20 N -0.378 5.378 21 C 0.060 3.940 22 H 0.123 0.877 23 C -0.157 4.157 24 C 0.018 3.982 25 H 0.113 0.887 26 O -0.377 6.377 27 C 0.014 3.986 28 H 0.103 0.897 29 O -0.381 6.381 30 C -0.175 4.175 31 H 0.095 0.905 32 H 0.144 0.856 33 H 0.179 0.821 34 H 0.179 0.821 35 H 0.251 0.749 36 H 0.246 0.754 37 H 0.117 0.883 38 H 0.097 0.903 39 H 0.244 0.756 40 H 0.243 0.757 41 H 0.081 0.919 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 25.379 3.202 3.776 25.857 hybrid contribution -0.609 1.042 0.250 1.233 sum 24.770 4.244 4.025 25.451 Atomic orbital electron populations 1.69739 1.07172 1.29810 1.49208 1.25307 0.95832 1.02306 0.95123 0.85221 0.79127 0.76889 0.79588 1.18286 1.20134 1.17669 1.20655 0.77713 0.96217 1.53152 0.90229 1.83459 1.21386 1.25606 1.82314 1.18823 0.90461 0.85387 0.96676 1.20970 1.01312 0.91392 1.14128 1.17513 0.89935 0.80641 1.02118 1.91432 1.78078 1.48934 1.94051 1.20958 0.90464 1.00605 1.09120 1.20934 1.01152 0.88458 0.96409 1.16797 0.85707 0.87301 1.10741 1.42196 1.25451 1.15803 1.48145 1.15947 0.80000 0.84220 0.79147 1.90855 1.70097 1.36452 1.51098 1.44961 1.28709 1.11366 1.52748 1.21677 0.83914 1.00175 0.88251 0.87722 1.22562 0.97765 0.97475 0.97865 1.23054 0.98233 0.82718 0.94200 0.88705 1.86571 1.76801 1.22123 1.52245 1.23099 0.95629 0.88132 0.91785 0.89738 1.86605 1.37771 1.44984 1.68761 1.22758 0.97884 1.00056 0.96753 0.90456 0.85607 0.82081 0.82139 0.74864 0.75382 0.88279 0.90276 0.75634 0.75716 0.91931 0.91790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.46 13.96 21.61 0.30 -53.16 16 2 C 0.01 0.75 5.49 84.83 0.47 1.22 16 3 Si 0.97 42.21 28.62 68.60 1.96 44.17 16 4 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 5 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 6 H -0.25 -10.54 7.11 99.48 0.71 -9.84 16 7 C -0.40 -22.49 9.95 67.92 0.68 -21.82 16 8 H 0.08 4.78 5.44 -2.91 -0.02 4.76 16 9 O -0.22 -10.95 8.14 -22.89 -0.19 -11.14 16 10 C 0.14 6.19 6.66 22.68 0.15 6.34 16 11 C -0.26 -11.46 9.14 22.41 0.20 -11.25 16 12 C 0.12 4.54 7.29 22.37 0.16 4.70 16 13 F -0.15 -5.48 17.26 44.97 0.78 -4.70 16 14 C -0.19 -6.29 10.02 22.33 0.22 -6.07 16 15 C -0.05 -1.66 8.70 22.37 0.19 -1.47 16 16 C 0.09 3.41 6.33 38.22 0.24 3.65 16 17 N -0.67 -21.50 5.20 -316.68 -1.65 -23.15 16 18 C 0.71 21.08 8.41 179.05 1.51 22.58 16 19 O -0.61 -20.98 13.40 -4.01 -0.05 -21.03 16 20 N -0.72 -15.79 5.18 -451.68 -2.34 -18.14 16 21 C 0.17 3.01 3.27 46.28 0.15 3.16 16 22 H 0.10 1.97 7.55 -2.39 -0.02 1.95 16 23 C -0.12 -1.58 6.18 31.67 0.20 -1.38 16 24 C 0.08 0.83 4.26 31.32 0.13 0.97 16 25 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 26 O -0.57 -6.69 12.59 -128.29 -1.62 -8.31 16 27 C 0.07 1.01 4.26 31.32 0.13 1.14 16 28 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 29 O -0.57 -8.84 12.63 -128.29 -1.62 -10.46 16 30 C -0.14 -2.79 6.24 31.66 0.20 -2.60 16 31 H 0.29 15.25 8.31 -92.71 -0.77 14.48 16 32 H 0.13 6.15 5.64 -2.91 -0.02 6.13 16 33 H 0.16 4.17 8.06 -2.91 -0.02 4.14 16 34 H 0.16 5.06 6.19 -2.92 -0.02 5.05 16 35 H 0.41 12.06 8.58 -92.71 -0.80 11.26 16 36 H 0.41 7.31 8.58 -92.71 -0.80 6.51 16 37 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.08 1.23 7.95 -2.39 -0.02 1.21 16 39 H 0.39 0.90 7.96 -74.06 -0.59 0.31 16 40 H 0.39 1.85 7.93 -74.06 -0.59 1.26 16 41 H 0.06 1.57 8.08 -2.39 -0.02 1.55 16 42 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -73.49 357.35 -1.41 -74.90 By element: Atomic # 1 Polarization: 33.46 SS G_CDS: -1.63 Total: 31.84 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: 4.64 Total: -0.83 kcal Atomic # 7 Polarization: -90.76 SS G_CDS: -3.69 Total: -94.44 kcal Atomic # 8 Polarization: -47.46 SS G_CDS: -3.48 Total: -50.93 kcal Atomic # 9 Polarization: -5.48 SS G_CDS: 0.78 Total: -4.70 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 1.96 Total: 44.17 kcal Total: -73.49 -1.41 -74.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365491404.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.162 kcal (2) G-P(sol) polarization free energy of solvation -73.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds