Wall clock time and date at job start Sat Apr 11 2020 05:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50690 * 109.70753 * 2 1 4 4 O 1.21280 * 120.00094 * 95.58778 * 3 2 1 5 5 N 1.34778 * 119.99972 * 275.58484 * 3 2 1 6 6 C 1.39474 * 119.99808 * 175.17134 * 5 3 2 7 7 C 1.38591 * 119.57980 * 184.96166 * 6 5 3 8 8 C 1.40813 * 118.79704 * 179.73597 * 7 6 5 9 9 C 1.41542 * 120.99987 * 180.23010 * 8 7 6 10 10 H 1.07998 * 120.00504 * 203.80700 * 9 8 7 11 11 C 1.40039 * 119.99557 * 23.80963 * 9 8 7 12 12 N 1.30737 * 120.00142 * 17.17378 * 11 9 8 13 13 Si 1.86798 * 119.99932 * 197.16878 * 11 9 8 14 14 H 1.48500 * 109.47109 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.47054 * 120.00214 * 13 11 9 16 16 H 1.48500 * 109.47411 * 240.00588 * 13 11 9 17 17 C 1.41176 * 118.00736 * 0.52302 * 8 7 6 18 18 C 1.37595 * 119.01289 * 359.72872 * 17 8 7 19 19 N 1.32077 * 121.10863 * 0.02562 * 18 17 8 20 20 C 1.53469 * 109.70789 * 120.59095 * 2 1 3 21 21 O 1.43177 * 108.25426 * 179.39526 * 20 2 1 22 22 C 1.36107 * 116.71513 * 313.82063 * 21 20 2 23 23 C 1.38707 * 119.39611 * 197.15293 * 22 21 20 24 24 C 1.38196 * 120.06277 * 180.19620 * 23 22 21 25 25 C 1.38258 * 120.11462 * 0.05787 * 24 23 22 26 26 C 1.38191 * 120.11397 * 359.91944 * 25 24 23 27 27 C 1.38706 * 120.06673 * 0.27184 * 26 25 24 28 28 O 1.36105 * 119.39485 * 180.63733 * 27 26 25 29 29 H 1.09004 * 109.46819 * 299.41370 * 1 2 3 30 30 H 1.08996 * 109.47088 * 59.40941 * 1 2 3 31 31 H 1.08996 * 109.47138 * 179.40971 * 1 2 3 32 32 H 0.96996 * 120.00075 * 355.16949 * 5 3 2 33 33 H 1.07998 * 120.60500 * 359.97438 * 7 6 5 34 34 H 0.96999 * 120.00168 * 179.97438 * 12 11 9 35 35 H 1.08000 * 120.49587 * 179.76145 * 17 8 7 36 36 H 1.07997 * 119.44530 * 180.02562 * 18 17 8 37 37 H 1.08994 * 109.70867 * 59.70223 * 20 2 1 38 38 H 1.08999 * 109.73423 * 299.10605 * 20 2 1 39 39 H 1.07996 * 119.96700 * 0.22548 * 23 22 21 40 40 H 1.08003 * 119.94217 * 180.02562 * 24 23 22 41 41 H 1.08002 * 119.94123 * 179.97438 * 25 24 23 42 42 H 1.08001 * 119.97161 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0382 1.4186 0.0000 4 8 2.3390 1.9550 1.0453 5 7 2.1585 2.0913 -1.1617 6 6 2.5321 3.4351 -1.1539 7 6 2.5532 4.1462 -2.3432 8 6 2.9275 5.5034 -2.3155 9 6 2.9604 6.2749 -3.5017 10 1 3.5868 7.1529 -3.5578 11 6 2.1805 5.8998 -4.6027 12 7 1.1876 5.0639 -4.4460 13 14 2.5587 6.5940 -6.2951 14 1 3.7234 7.5109 -6.2051 15 1 2.8758 5.4819 -7.2268 16 1 1.3782 7.3407 -6.7991 17 6 3.2752 6.0699 -1.0700 18 6 3.2293 5.2824 0.0574 19 7 2.8678 4.0139 -0.0105 20 6 2.0476 -0.7353 1.2437 21 8 3.4788 -0.7291 1.2052 22 6 4.0604 -1.0573 0.0192 23 6 5.3993 -1.4188 -0.0056 24 6 6.0048 -1.7507 -1.2027 25 6 5.2784 -1.7223 -2.3788 26 6 3.9440 -1.3635 -2.3610 27 6 3.3312 -1.0254 -1.1634 28 8 2.0129 -0.6868 -1.1599 29 1 -0.3633 0.5047 0.8952 30 1 -0.3633 0.5230 -0.8846 31 1 -0.3633 -1.0276 -0.0106 32 1 1.9853 1.6410 -2.0031 33 1 2.2836 3.6693 -3.2739 34 1 0.6472 4.8043 -5.2086 35 1 3.5721 7.1061 -1.0030 36 1 3.4934 5.7088 1.0139 37 1 1.6842 -1.7628 1.2410 38 1 1.7019 -0.2256 2.1430 39 1 5.9690 -1.4413 0.9116 40 1 7.0473 -2.0323 -1.2197 41 1 5.7544 -1.9818 -3.3128 42 1 3.3788 -1.3417 -3.2811 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411298318.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:15 Heat of formation + Delta-G solvation = -54.664244 kcal Electronic energy + Delta-G solvation = -29719.316267 eV Core-core repulsion = 25629.626320 eV Total energy + Delta-G solvation = -4089.689948 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.87691 -41.04874 -39.70636 -38.50150 -38.44431 -36.21927 -35.55212 -34.07596 -32.51076 -31.67821 -30.55350 -30.11442 -27.97105 -27.81121 -25.71007 -24.07176 -23.88760 -23.68106 -22.40134 -20.84311 -20.12759 -19.51768 -19.11976 -18.01588 -17.81509 -17.16768 -16.86279 -16.63542 -16.30479 -16.12901 -16.01443 -15.83923 -15.68274 -15.25179 -14.97275 -14.86160 -14.76837 -14.41929 -14.30409 -13.96178 -13.74035 -13.40237 -13.21151 -13.07147 -12.94587 -12.85206 -12.70293 -12.63527 -12.17810 -12.09585 -11.92953 -11.59063 -11.47382 -11.19647 -11.08015 -10.00871 -9.76537 -9.61005 -9.12798 -8.95311 -8.69764 -6.60421 0.25128 0.28824 0.61302 0.94937 1.39779 1.42177 1.55012 1.59231 1.75313 1.96038 2.18298 2.23022 2.70435 2.75505 2.97756 3.23860 3.50652 3.62184 3.71318 4.03113 4.08513 4.13042 4.21707 4.31019 4.41196 4.45011 4.53891 4.60663 4.69029 4.75510 4.84484 4.87384 4.96937 5.00622 5.14801 5.17803 5.18501 5.42605 5.47629 5.54915 5.64499 5.78975 5.85537 6.03287 6.28723 6.37868 6.49535 6.74092 6.78342 7.06983 7.74599 8.22522 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012335 B = 0.003702 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.500777 B = 7560.854058 C = 8277.701054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.067 3.933 3 C 0.485 3.515 4 O -0.501 6.501 5 N -0.642 5.642 6 C 0.332 3.668 7 C -0.260 4.260 8 C 0.116 3.884 9 C -0.482 4.482 10 H 0.086 0.914 11 C 0.041 3.959 12 N -0.810 5.810 13 Si 0.988 3.012 14 H -0.257 1.257 15 H -0.261 1.261 16 H -0.264 1.264 17 C -0.298 4.298 18 C 0.114 3.886 19 N -0.580 5.580 20 C 0.048 3.952 21 O -0.320 6.320 22 C 0.029 3.971 23 C -0.134 4.134 24 C -0.109 4.109 25 C -0.117 4.117 26 C -0.119 4.119 27 C 0.019 3.981 28 O -0.293 6.293 29 H 0.096 0.904 30 H 0.074 0.926 31 H 0.115 0.885 32 H 0.418 0.582 33 H 0.122 0.878 34 H 0.294 0.706 35 H 0.118 0.882 36 H 0.151 0.849 37 H 0.117 0.883 38 H 0.133 0.867 39 H 0.141 0.859 40 H 0.163 0.837 41 H 0.164 0.836 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.056 -16.094 0.577 16.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.025 3.975 3 C 0.270 3.730 4 O -0.373 6.373 5 N -0.289 5.289 6 C 0.106 3.894 7 C -0.285 4.285 8 C 0.108 3.892 9 C -0.513 4.513 10 H 0.104 0.896 11 C -0.177 4.177 12 N -0.435 5.435 13 Si 0.807 3.193 14 H -0.181 1.181 15 H -0.186 1.186 16 H -0.189 1.189 17 C -0.321 4.321 18 C -0.040 4.040 19 N -0.300 5.300 20 C -0.028 4.028 21 O -0.234 6.234 22 C -0.016 4.016 23 C -0.152 4.152 24 C -0.127 4.127 25 C -0.135 4.135 26 C -0.137 4.137 27 C -0.025 4.025 28 O -0.209 6.209 29 H 0.115 0.885 30 H 0.093 0.907 31 H 0.134 0.866 32 H 0.255 0.745 33 H 0.140 0.860 34 H 0.105 0.895 35 H 0.136 0.864 36 H 0.168 0.832 37 H 0.134 0.866 38 H 0.151 0.849 39 H 0.159 0.841 40 H 0.181 0.819 41 H 0.182 0.818 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 0.958 -16.387 2.080 16.546 hybrid contribution -0.252 1.034 -1.536 1.869 sum 0.706 -15.353 0.544 15.379 Atomic orbital electron populations 1.21838 0.85551 1.06599 1.04949 1.22959 0.99950 0.86604 0.87972 1.21498 0.78489 0.89139 0.83881 1.90776 1.45556 1.69328 1.31638 1.43369 1.66533 1.08675 1.10301 1.18416 0.95507 0.84653 0.90779 1.21499 1.15560 0.95402 0.96065 1.17987 0.86849 0.91254 0.93154 1.19916 1.23583 1.10857 0.96906 0.89608 1.26855 0.92165 0.93853 1.04847 1.69813 1.12304 1.26756 1.34606 0.85076 0.79588 0.79154 0.75445 1.18057 1.18551 1.18858 1.22089 1.15903 1.00689 0.93447 1.22224 0.95068 0.88677 0.98024 1.67317 1.22582 1.13172 1.26935 1.23744 0.78257 1.02360 0.98428 1.86316 1.21999 1.85052 1.30066 1.19386 0.95124 1.02615 0.84441 1.20787 0.91538 1.01977 1.00931 1.21349 1.01495 0.99047 0.90795 1.21353 0.92482 0.99656 0.99970 1.20824 0.95839 1.01642 0.95402 1.19247 0.84560 1.04402 0.94327 1.86366 1.21764 1.72213 1.40513 0.88542 0.90658 0.86608 0.74452 0.86048 0.89549 0.86396 0.83201 0.86564 0.84900 0.84149 0.81900 0.81806 0.83305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.77 8.87 71.98 0.64 -2.13 16 2 C 0.07 1.94 1.06 -11.38 -0.01 1.93 16 3 C 0.49 19.53 5.80 87.65 0.51 20.04 16 4 O -0.50 -24.01 14.26 -2.31 -0.03 -24.05 16 5 N -0.64 -27.65 5.33 -308.66 -1.65 -29.29 16 6 C 0.33 17.07 7.42 132.75 0.98 18.05 16 7 C -0.26 -13.84 8.62 22.98 0.20 -13.64 16 8 C 0.12 6.30 5.60 -21.11 -0.12 6.18 16 9 C -0.48 -25.15 9.12 23.52 0.21 -24.94 16 10 H 0.09 4.28 7.90 -2.91 -0.02 4.25 16 11 C 0.04 1.94 5.19 85.29 0.44 2.38 16 12 N -0.81 -39.89 10.94 21.84 0.24 -39.65 16 13 Si 0.99 35.74 29.59 68.60 2.03 37.77 16 14 H -0.26 -9.18 7.11 99.48 0.71 -8.47 16 15 H -0.26 -9.01 7.11 99.48 0.71 -8.30 16 16 H -0.26 -9.13 7.11 99.48 0.71 -8.43 16 17 C -0.30 -15.08 9.90 22.84 0.23 -14.85 16 18 C 0.11 5.65 11.15 84.50 0.94 6.59 16 19 N -0.58 -31.00 7.85 -193.53 -1.52 -32.52 16 20 C 0.05 1.24 5.59 72.14 0.40 1.65 16 21 O -0.32 -10.57 9.95 -78.49 -0.78 -11.36 16 22 C 0.03 0.92 6.31 22.56 0.14 1.06 16 23 C -0.13 -3.55 9.96 22.37 0.22 -3.33 16 24 C -0.11 -2.27 10.04 22.26 0.22 -2.05 16 25 C -0.12 -2.38 10.04 22.26 0.22 -2.16 16 26 C -0.12 -2.94 9.96 22.37 0.22 -2.72 16 27 C 0.02 0.57 6.16 22.56 0.14 0.70 16 28 O -0.29 -8.44 9.14 -82.52 -0.75 -9.20 16 29 H 0.10 1.90 8.14 -2.38 -0.02 1.88 16 30 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.12 1.62 8.14 -2.39 -0.02 1.61 16 32 H 0.42 16.05 8.11 -92.71 -0.75 15.30 16 33 H 0.12 6.45 6.21 -2.91 -0.02 6.43 16 34 H 0.29 12.82 8.29 -92.71 -0.77 12.05 16 35 H 0.12 5.42 8.06 -2.91 -0.02 5.40 16 36 H 0.15 6.41 8.06 -2.91 -0.02 6.39 16 37 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.13 3.29 7.89 -2.39 -0.02 3.27 16 39 H 0.14 3.34 8.06 -2.91 -0.02 3.32 16 40 H 0.16 2.24 8.06 -2.91 -0.02 2.21 16 41 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 42 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -72.94 358.50 3.46 -69.48 By element: Atomic # 1 Polarization: 45.72 SS G_CDS: 0.32 Total: 46.04 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: 5.60 Total: -7.23 kcal Atomic # 7 Polarization: -98.54 SS G_CDS: -2.93 Total: -101.46 kcal Atomic # 8 Polarization: -43.03 SS G_CDS: -1.57 Total: -44.60 kcal Atomic # 14 Polarization: 35.74 SS G_CDS: 2.03 Total: 37.77 kcal Total: -72.94 3.46 -69.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411298318.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.812 kcal (2) G-P(sol) polarization free energy of solvation -72.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds