Wall clock time and date at job start Sat Apr 11 2020 05:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30633 * 1 3 3 Si 1.86799 * 119.99577 * 2 1 4 4 H 1.48501 * 109.47306 * 269.99917 * 3 2 1 5 5 H 1.48493 * 109.47396 * 29.99933 * 3 2 1 6 6 H 1.48498 * 109.46875 * 149.99942 * 3 2 1 7 7 C 1.40276 * 120.00275 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00152 * 189.19861 * 7 2 1 9 9 C 1.40880 * 119.99540 * 9.19686 * 7 2 1 10 10 C 1.40708 * 120.33458 * 33.92451 * 9 7 2 11 11 C 1.37582 * 119.88330 * 180.29716 * 10 9 7 12 12 C 1.38840 * 120.57724 * 359.69675 * 11 10 9 13 13 C 1.38201 * 120.67820 * 359.97438 * 12 11 10 14 14 C 1.39251 * 120.09344 * 0.04864 * 13 12 11 15 15 C 1.47380 * 120.29183 * 179.97438 * 14 13 12 16 16 O 1.21624 * 120.00710 * 185.74529 * 15 14 13 17 17 N 1.34784 * 119.99512 * 5.74155 * 15 14 13 18 18 C 1.39802 * 120.00003 * 185.06018 * 17 15 14 19 19 C 1.38963 * 120.04946 * 213.17459 * 18 17 15 20 20 C 1.38110 * 120.04087 * 179.97438 * 19 18 17 21 21 C 1.38227 * 120.12489 * 359.74868 * 20 19 18 22 22 C 1.38775 * 120.09024 * 0.50263 * 21 20 19 23 23 O 1.35894 * 120.01584 * 179.76444 * 22 21 20 24 24 C 1.42900 * 117.00091 * 359.73234 * 23 22 21 25 25 C 1.50702 * 109.46966 * 179.97438 * 24 23 22 26 26 N 1.34771 * 119.99920 * 179.72493 * 25 24 23 27 27 O 1.21279 * 120.00357 * 359.97438 * 25 24 23 28 28 C 1.38611 * 119.96181 * 359.49830 * 22 21 20 29 29 H 0.97001 * 120.00096 * 0.02562 * 1 2 3 30 30 H 1.08007 * 120.05666 * 359.97337 * 10 9 7 31 31 H 1.08000 * 119.70965 * 179.72092 * 11 10 9 32 32 H 1.07996 * 119.65983 * 180.02562 * 12 11 10 33 33 H 1.07996 * 119.95746 * 180.02562 * 13 12 11 34 34 H 0.96996 * 119.99815 * 5.06601 * 17 15 14 35 35 H 1.08005 * 119.97473 * 359.95870 * 19 18 17 36 36 H 1.07998 * 119.93903 * 180.02562 * 20 19 18 37 37 H 1.08004 * 119.95331 * 180.25286 * 21 20 19 38 38 H 1.09003 * 109.47008 * 59.99497 * 24 23 22 39 39 H 1.09000 * 109.47182 * 299.99232 * 24 23 22 40 40 H 0.97004 * 120.00384 * 180.27729 * 26 25 24 41 41 H 0.97006 * 120.00375 * 0.27091 * 26 25 24 42 42 H 1.08000 * 120.06543 * 180.27303 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 2.4877 2.0465 -1.4001 5 1 1.4377 2.6527 0.7000 6 1 3.5377 1.4403 0.7001 7 6 2.0078 -1.2148 0.0005 8 1 3.0773 -1.2207 0.1501 9 6 1.3169 -2.4271 -0.1939 10 6 0.1952 -2.4776 -1.0419 11 6 -0.4763 -3.6651 -1.2203 12 6 -0.0534 -4.8195 -0.5751 13 6 1.0494 -4.7981 0.2576 14 6 1.7496 -3.6114 0.4587 15 6 2.9259 -3.5835 1.3462 16 8 3.4707 -2.5264 1.6010 17 7 3.3979 -4.7296 1.8755 18 6 4.4463 -4.6931 2.7997 19 6 5.3744 -5.7266 2.8404 20 6 6.4103 -5.6900 3.7531 21 6 6.5298 -4.6237 4.6245 22 6 5.6030 -3.5913 4.5920 23 8 5.7192 -2.5461 5.4526 24 6 6.8163 -2.5781 6.3678 25 6 6.7829 -1.3463 7.2353 26 7 7.7243 -1.1632 8.1822 27 8 5.9062 -0.5219 7.0844 28 6 4.5619 -3.6242 3.6775 29 1 -0.4850 0.8400 -0.0004 30 1 -0.1413 -1.5846 -1.5476 31 1 -1.3397 -3.6998 -1.8682 32 1 -0.5912 -5.7437 -0.7261 33 1 1.3685 -5.7030 0.7533 34 1 3.0103 -5.5798 1.6152 35 1 5.2853 -6.5590 2.1580 36 1 7.1309 -6.4939 3.7830 37 1 7.3433 -4.5960 5.3344 38 1 7.7531 -2.6048 5.8111 39 1 6.7407 -3.4665 6.9947 40 1 7.7005 -0.3723 8.7433 41 1 8.4257 -1.8224 8.3027 42 1 3.8422 -2.8195 3.6478 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412371735.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:09 Heat of formation + Delta-G solvation = -55.161206 kcal Electronic energy + Delta-G solvation = -28119.302144 eV Core-core repulsion = 24029.590647 eV Total energy + Delta-G solvation = -4089.711497 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.49276 -39.71769 -38.81476 -37.42807 -36.45853 -34.13837 -34.03840 -33.50411 -30.76573 -30.20911 -29.76523 -28.54167 -28.18258 -25.49641 -23.34100 -22.41222 -21.90878 -21.08666 -20.56968 -19.44304 -18.57481 -17.89676 -17.49636 -16.69726 -16.50870 -16.44894 -15.92712 -15.56916 -15.33919 -15.07251 -14.43563 -14.29353 -14.17218 -14.02324 -13.61089 -13.40056 -13.02569 -12.84750 -12.71510 -12.51552 -12.28731 -11.71237 -11.63751 -11.29885 -11.14247 -11.10509 -11.01456 -10.70793 -10.52100 -10.19280 -10.08144 -10.06260 -9.81840 -9.71870 -9.29078 -8.53682 -8.12934 -7.79744 -7.60219 -7.40213 -6.83581 -4.43322 1.47418 1.61551 2.29733 2.31204 2.53781 2.79207 3.12804 3.18836 3.26990 3.55042 3.81812 3.87087 3.98958 4.20543 4.45275 4.65120 4.68334 4.78059 4.94909 5.11510 5.34040 5.48756 5.57811 5.70941 5.85667 5.93118 6.18349 6.25657 6.36456 6.42342 6.46240 6.51991 6.62038 6.72523 6.88803 6.91349 7.07091 7.15461 7.26607 7.41179 7.53171 7.57050 7.82795 7.92371 7.92497 8.12365 8.20104 8.61666 8.77365 8.84365 9.22043 10.10999 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010061 B = 0.003412 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2782.423750 B = 8204.957904 C =10515.086633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.071 3.929 3 Si 0.915 3.085 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.255 1.255 7 C -0.412 4.412 8 H 0.107 0.893 9 C 0.146 3.854 10 C -0.145 4.145 11 C -0.095 4.095 12 C -0.244 4.244 13 C -0.056 4.056 14 C -0.266 4.266 15 C 0.559 3.441 16 O -0.511 6.511 17 N -0.687 5.687 18 C 0.213 3.787 19 C -0.194 4.194 20 C -0.062 4.062 21 C -0.243 4.243 22 C 0.145 3.855 23 O -0.287 6.287 24 C 0.041 3.959 25 C 0.517 3.483 26 N -0.854 5.854 27 O -0.511 6.511 28 C -0.154 4.154 29 H 0.284 0.716 30 H 0.119 0.881 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.405 0.595 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.407 0.593 41 H 0.402 0.598 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.880 -9.104 10.926 19.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.149 4.149 3 Si 0.739 3.261 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.179 1.179 7 C -0.440 4.440 8 H 0.125 0.875 9 C 0.142 3.858 10 C -0.164 4.164 11 C -0.114 4.114 12 C -0.263 4.263 13 C -0.075 4.075 14 C -0.272 4.272 15 C 0.356 3.644 16 O -0.387 6.387 17 N -0.333 5.333 18 C 0.116 3.884 19 C -0.215 4.215 20 C -0.081 4.081 21 C -0.262 4.262 22 C 0.099 3.901 23 O -0.200 6.200 24 C -0.038 4.038 25 C 0.300 3.700 26 N -0.421 5.421 27 O -0.384 6.384 28 C -0.175 4.175 29 H 0.095 0.905 30 H 0.137 0.863 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.242 0.758 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.239 0.761 41 H 0.230 0.770 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 13.178 -7.519 10.815 18.632 hybrid contribution 0.574 0.022 0.324 0.660 sum 13.752 -7.497 11.139 19.220 Atomic orbital electron populations 1.69707 1.07821 1.29825 1.33858 1.26142 0.94806 1.01919 0.92004 0.86166 0.81090 0.79666 0.79215 1.19244 1.20154 1.17859 1.20252 0.97493 0.89472 1.36777 0.87528 1.17466 0.90084 0.91207 0.87084 1.21376 0.98276 0.96439 1.00331 1.20815 0.98188 0.93557 0.98818 1.20279 1.01611 0.97439 1.07015 1.20636 0.95173 0.95033 0.96612 1.19288 1.02053 0.96467 1.09346 1.18646 0.83993 0.82130 0.79670 1.90732 1.58482 1.29255 1.60228 1.43874 1.34998 1.11196 1.43242 1.17461 0.88521 0.94125 0.88313 1.20805 0.96381 1.01013 1.03278 1.20568 0.96685 0.96908 0.93933 1.21014 1.02233 0.97187 1.05791 1.18737 0.94780 0.86435 0.90116 1.86196 1.46253 1.41980 1.45552 1.22376 0.91608 0.97255 0.92537 1.20157 0.81732 0.87437 0.80699 1.43653 1.31356 1.28370 1.38683 1.90852 1.34984 1.44613 1.67983 1.20459 1.00380 1.01692 0.95013 0.90534 0.86346 0.88975 0.88981 0.89213 0.75798 0.85808 0.85817 0.86042 0.88932 0.88959 0.76097 0.77020 0.83339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.50 11.12 55.56 0.62 -19.88 16 2 C 0.07 1.83 5.26 -17.30 -0.09 1.74 16 3 Si 0.91 20.11 29.57 -169.99 -5.03 15.08 16 4 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.26 -5.86 7.11 56.52 0.40 -5.45 16 7 C -0.41 -11.35 7.70 -37.82 -0.29 -11.64 16 8 H 0.11 3.05 5.88 -52.49 -0.31 2.74 16 9 C 0.15 3.89 5.51 -106.53 -0.59 3.30 16 10 C -0.15 -3.65 8.62 -38.89 -0.34 -3.99 16 11 C -0.09 -2.11 10.01 -39.60 -0.40 -2.51 16 12 C -0.24 -5.10 10.03 -39.37 -0.39 -5.49 16 13 C -0.06 -1.16 9.50 -39.22 -0.37 -1.54 16 14 C -0.27 -6.44 5.92 -104.37 -0.62 -7.06 16 15 C 0.56 12.96 7.46 -12.54 -0.09 12.87 16 16 O -0.51 -13.48 11.24 5.26 0.06 -13.42 16 17 N -0.69 -12.55 5.27 -10.86 -0.06 -12.61 16 18 C 0.21 3.69 6.28 -83.75 -0.53 3.17 16 19 C -0.19 -2.64 9.96 -39.36 -0.39 -3.03 16 20 C -0.06 -0.73 10.03 -39.63 -0.40 -1.13 16 21 C -0.24 -2.97 9.04 -39.39 -0.36 -3.33 16 22 C 0.15 2.34 6.68 -39.25 -0.26 2.07 16 23 O -0.29 -4.69 9.67 -39.32 -0.38 -5.07 16 24 C 0.04 0.42 5.22 36.01 0.19 0.61 16 25 C 0.52 5.87 8.18 -10.99 -0.09 5.78 16 26 N -0.85 -4.91 8.87 31.22 0.28 -4.64 16 27 O -0.51 -8.98 17.34 -14.35 -0.25 -9.22 16 28 C -0.15 -2.95 8.59 -39.24 -0.34 -3.29 16 29 H 0.28 6.73 8.29 -40.82 -0.34 6.39 16 30 H 0.12 3.04 6.57 -52.48 -0.34 2.70 16 31 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 32 H 0.09 1.66 8.06 -52.49 -0.42 1.23 16 33 H 0.09 1.52 6.48 -52.49 -0.34 1.18 16 34 H 0.41 6.10 6.92 -40.82 -0.28 5.82 16 35 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 36 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 37 H 0.12 1.04 6.29 -52.48 -0.33 0.71 16 38 H 0.09 0.69 7.65 -51.93 -0.40 0.29 16 39 H 0.09 0.64 7.67 -51.93 -0.40 0.24 16 40 H 0.41 2.05 8.93 -40.82 -0.36 1.68 16 41 H 0.40 0.76 8.83 -40.82 -0.36 0.40 16 42 H 0.15 3.37 6.39 -52.49 -0.34 3.04 16 LS Contribution 360.52 15.07 5.43 5.43 Total: -1.00 -35.62 360.52 -8.97 -44.58 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -4.29 Total: 13.19 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -5.35 Total: -13.46 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: 0.84 Total: -37.13 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: -0.57 Total: -27.71 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.03 Total: 15.08 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.62 -8.97 -44.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412371735.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.578 kcal (2) G-P(sol) polarization free energy of solvation -35.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds