Wall clock time and date at job start Sat Apr 11 2020 05:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30633 * 1 3 3 Si 1.86799 * 119.99577 * 2 1 4 4 H 1.48501 * 109.47306 * 269.99917 * 3 2 1 5 5 H 1.48493 * 109.47396 * 29.99933 * 3 2 1 6 6 H 1.48498 * 109.46875 * 149.99942 * 3 2 1 7 7 C 1.40276 * 120.00275 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00152 * 189.19861 * 7 2 1 9 9 C 1.40880 * 119.99540 * 9.19686 * 7 2 1 10 10 C 1.40708 * 120.33458 * 33.92451 * 9 7 2 11 11 C 1.37582 * 119.88330 * 180.29716 * 10 9 7 12 12 C 1.38840 * 120.57724 * 359.69675 * 11 10 9 13 13 C 1.38201 * 120.67820 * 359.97438 * 12 11 10 14 14 C 1.39251 * 120.09344 * 0.04864 * 13 12 11 15 15 C 1.47380 * 120.29183 * 179.97438 * 14 13 12 16 16 O 1.21624 * 120.00710 * 185.74529 * 15 14 13 17 17 N 1.34784 * 119.99512 * 5.74155 * 15 14 13 18 18 C 1.39802 * 120.00003 * 185.06018 * 17 15 14 19 19 C 1.38963 * 120.04946 * 213.17459 * 18 17 15 20 20 C 1.38110 * 120.04087 * 179.97438 * 19 18 17 21 21 C 1.38227 * 120.12489 * 359.74868 * 20 19 18 22 22 C 1.38775 * 120.09024 * 0.50263 * 21 20 19 23 23 O 1.35894 * 120.01584 * 179.76444 * 22 21 20 24 24 C 1.42900 * 117.00091 * 359.73234 * 23 22 21 25 25 C 1.50702 * 109.46966 * 179.97438 * 24 23 22 26 26 N 1.34771 * 119.99920 * 179.72493 * 25 24 23 27 27 O 1.21279 * 120.00357 * 359.97438 * 25 24 23 28 28 C 1.38611 * 119.96181 * 359.49830 * 22 21 20 29 29 H 0.97001 * 120.00096 * 0.02562 * 1 2 3 30 30 H 1.08007 * 120.05666 * 359.97337 * 10 9 7 31 31 H 1.08000 * 119.70965 * 179.72092 * 11 10 9 32 32 H 1.07996 * 119.65983 * 180.02562 * 12 11 10 33 33 H 1.07996 * 119.95746 * 180.02562 * 13 12 11 34 34 H 0.96996 * 119.99815 * 5.06601 * 17 15 14 35 35 H 1.08005 * 119.97473 * 359.95870 * 19 18 17 36 36 H 1.07998 * 119.93903 * 180.02562 * 20 19 18 37 37 H 1.08004 * 119.95331 * 180.25286 * 21 20 19 38 38 H 1.09003 * 109.47008 * 59.99497 * 24 23 22 39 39 H 1.09000 * 109.47182 * 299.99232 * 24 23 22 40 40 H 0.97004 * 120.00384 * 180.27729 * 26 25 24 41 41 H 0.97006 * 120.00375 * 0.27091 * 26 25 24 42 42 H 1.08000 * 120.06543 * 180.27303 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 2.4877 2.0465 -1.4001 5 1 1.4377 2.6527 0.7000 6 1 3.5377 1.4403 0.7001 7 6 2.0078 -1.2148 0.0005 8 1 3.0773 -1.2207 0.1501 9 6 1.3169 -2.4271 -0.1939 10 6 0.1952 -2.4776 -1.0419 11 6 -0.4763 -3.6651 -1.2203 12 6 -0.0534 -4.8195 -0.5751 13 6 1.0494 -4.7981 0.2576 14 6 1.7496 -3.6114 0.4587 15 6 2.9259 -3.5835 1.3462 16 8 3.4707 -2.5264 1.6010 17 7 3.3979 -4.7296 1.8755 18 6 4.4463 -4.6931 2.7997 19 6 5.3744 -5.7266 2.8404 20 6 6.4103 -5.6900 3.7531 21 6 6.5298 -4.6237 4.6245 22 6 5.6030 -3.5913 4.5920 23 8 5.7192 -2.5461 5.4526 24 6 6.8163 -2.5781 6.3678 25 6 6.7829 -1.3463 7.2353 26 7 7.7243 -1.1632 8.1822 27 8 5.9062 -0.5219 7.0844 28 6 4.5619 -3.6242 3.6775 29 1 -0.4850 0.8400 -0.0004 30 1 -0.1413 -1.5846 -1.5476 31 1 -1.3397 -3.6998 -1.8682 32 1 -0.5912 -5.7437 -0.7261 33 1 1.3685 -5.7030 0.7533 34 1 3.0103 -5.5798 1.6152 35 1 5.2853 -6.5590 2.1580 36 1 7.1309 -6.4939 3.7830 37 1 7.3433 -4.5960 5.3344 38 1 7.7531 -2.6048 5.8111 39 1 6.7407 -3.4665 6.9947 40 1 7.7005 -0.3723 8.7433 41 1 8.4257 -1.8224 8.3027 42 1 3.8422 -2.8195 3.6478 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412371735.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:08 Heat of formation + Delta-G solvation = -82.077180 kcal Electronic energy + Delta-G solvation = -28120.469308 eV Core-core repulsion = 24029.590647 eV Total energy + Delta-G solvation = -4090.878662 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.69272 -41.00731 -40.05971 -38.94345 -37.94763 -35.84776 -35.19247 -34.84410 -32.16463 -31.65337 -31.49390 -29.90100 -29.09981 -27.36854 -24.85647 -23.64806 -23.26730 -22.65291 -21.72714 -21.02791 -19.87305 -19.19129 -18.68372 -18.12017 -17.64727 -17.37006 -17.20645 -16.95987 -16.77075 -16.42706 -15.99445 -15.77650 -15.57739 -15.38132 -15.06965 -14.71777 -14.56692 -14.39410 -14.05282 -13.96529 -13.65986 -13.42904 -12.91072 -12.89876 -12.69386 -12.55981 -12.44680 -12.29191 -12.13653 -11.88866 -11.53184 -11.21038 -11.17430 -11.09540 -10.79608 -10.31993 -9.52582 -9.37443 -9.25988 -8.94798 -8.73666 -6.42074 0.19895 0.49582 0.60567 0.98183 1.27820 1.40028 1.44471 1.46267 1.68356 2.16539 2.23661 2.29025 2.71393 2.84508 2.91621 3.68050 3.77342 3.98481 4.04926 4.12179 4.16106 4.25301 4.31443 4.33481 4.44306 4.56388 4.63567 4.79216 4.90915 5.06761 5.20582 5.28784 5.31882 5.40755 5.45677 5.53672 5.58241 5.77395 5.78809 5.93646 6.02863 6.07453 6.29782 6.30484 6.50462 6.57200 6.70505 6.85287 6.93901 7.24405 7.50932 8.23302 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010061 B = 0.003412 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2782.423750 B = 8204.957904 C =10515.086633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.035 3.965 3 Si 0.972 3.028 4 H -0.247 1.247 5 H -0.262 1.262 6 H -0.280 1.280 7 C -0.456 4.456 8 H 0.079 0.921 9 C 0.116 3.884 10 C -0.176 4.176 11 C -0.089 4.089 12 C -0.233 4.233 13 C -0.052 4.052 14 C -0.283 4.283 15 C 0.555 3.445 16 O -0.555 6.555 17 N -0.670 5.670 18 C 0.182 3.818 19 C -0.185 4.185 20 C -0.047 4.047 21 C -0.222 4.222 22 C 0.133 3.867 23 O -0.333 6.333 24 C 0.033 3.967 25 C 0.512 3.488 26 N -0.821 5.821 27 O -0.590 6.590 28 C -0.199 4.199 29 H 0.290 0.710 30 H 0.101 0.899 31 H 0.123 0.877 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.421 0.579 35 H 0.155 0.845 36 H 0.177 0.823 37 H 0.171 0.829 38 H 0.128 0.872 39 H 0.134 0.866 40 H 0.413 0.587 41 H 0.425 0.575 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.427 -13.573 12.018 24.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.181 4.181 3 Si 0.794 3.206 4 H -0.171 1.171 5 H -0.187 1.187 6 H -0.205 1.205 7 C -0.485 4.485 8 H 0.097 0.903 9 C 0.112 3.888 10 C -0.195 4.195 11 C -0.108 4.108 12 C -0.251 4.251 13 C -0.071 4.071 14 C -0.288 4.288 15 C 0.350 3.650 16 O -0.434 6.434 17 N -0.317 5.317 18 C 0.087 3.913 19 C -0.205 4.205 20 C -0.066 4.066 21 C -0.241 4.241 22 C 0.087 3.913 23 O -0.246 6.246 24 C -0.045 4.045 25 C 0.296 3.704 26 N -0.388 5.388 27 O -0.470 6.470 28 C -0.221 4.221 29 H 0.101 0.899 30 H 0.119 0.881 31 H 0.141 0.859 32 H 0.155 0.845 33 H 0.154 0.846 34 H 0.261 0.739 35 H 0.173 0.827 36 H 0.194 0.806 37 H 0.189 0.811 38 H 0.146 0.854 39 H 0.152 0.848 40 H 0.246 0.754 41 H 0.258 0.742 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 15.789 -12.070 11.949 23.190 hybrid contribution -0.073 1.115 0.162 1.130 sum 15.716 -10.954 12.112 22.665 Atomic orbital electron populations 1.69723 1.08451 1.30687 1.35577 1.26728 0.95606 1.04157 0.91574 0.85352 0.78684 0.76629 0.79965 1.17059 1.18660 1.20525 1.20150 0.96557 0.91331 1.40470 0.90298 1.17850 0.91103 0.92027 0.87827 1.21309 0.99284 0.97417 1.01479 1.21221 0.98266 0.92865 0.98445 1.20830 1.00925 0.98438 1.04949 1.21088 0.94478 0.95322 0.96191 1.19690 1.02785 0.97181 1.09123 1.18690 0.83804 0.82875 0.79595 1.90722 1.59786 1.31380 1.61539 1.43442 1.35267 1.10182 1.42835 1.17722 0.89690 0.95433 0.88460 1.21183 0.95351 1.00065 1.03907 1.21215 0.96149 0.97475 0.91717 1.21540 1.01503 0.95141 1.05878 1.18844 0.94963 0.87700 0.89763 1.86141 1.49033 1.42812 1.46655 1.22841 0.91214 0.98021 0.92415 1.20597 0.81421 0.87124 0.81232 1.43410 1.30136 1.28817 1.36473 1.90829 1.38381 1.47262 1.70515 1.20290 1.01685 1.01578 0.98513 0.89896 0.88054 0.85937 0.84520 0.84607 0.73934 0.82739 0.80584 0.81124 0.85449 0.84804 0.75405 0.74233 0.89231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.52 11.12 21.88 0.24 -45.28 16 2 C 0.03 1.95 5.26 85.37 0.45 2.39 16 3 Si 0.97 44.62 29.57 68.60 2.03 46.65 16 4 H -0.25 -10.36 7.11 99.48 0.71 -9.65 16 5 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 6 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 7 C -0.46 -27.51 7.70 23.41 0.18 -27.33 16 8 H 0.08 5.05 5.88 -2.91 -0.02 5.03 16 9 C 0.12 6.58 5.51 -21.10 -0.12 6.46 16 10 C -0.18 -9.21 8.62 22.72 0.20 -9.02 16 11 C -0.09 -3.89 10.01 22.26 0.22 -3.67 16 12 C -0.23 -9.01 10.03 22.40 0.22 -8.78 16 13 C -0.05 -2.10 9.50 22.50 0.21 -1.88 16 14 C -0.28 -14.19 5.92 -19.70 -0.12 -14.30 16 15 C 0.56 27.39 7.46 86.65 0.65 28.04 16 16 O -0.56 -32.40 11.24 -4.11 -0.05 -32.45 16 17 N -0.67 -24.88 5.27 -306.52 -1.62 -26.50 16 18 C 0.18 6.38 6.28 38.18 0.24 6.62 16 19 C -0.18 -4.39 9.96 22.41 0.22 -4.16 16 20 C -0.05 -0.84 10.03 22.24 0.22 -0.62 16 21 C -0.22 -4.46 9.04 22.40 0.20 -4.26 16 22 C 0.13 4.28 6.68 22.49 0.15 4.43 16 23 O -0.33 -11.20 9.67 -73.32 -0.71 -11.91 16 24 C 0.03 0.59 5.22 71.24 0.37 0.96 16 25 C 0.51 11.39 8.18 87.66 0.72 12.10 16 26 N -0.82 -7.70 8.87 -173.54 -1.54 -9.24 16 27 O -0.59 -22.08 17.34 16.01 0.28 -21.80 16 28 C -0.20 -8.18 8.59 22.49 0.19 -7.98 16 29 H 0.29 14.60 8.29 -92.71 -0.77 13.83 16 30 H 0.10 5.55 6.57 -2.91 -0.02 5.53 16 31 H 0.12 4.51 8.06 -2.91 -0.02 4.49 16 32 H 0.14 4.15 8.06 -2.91 -0.02 4.12 16 33 H 0.14 4.10 6.48 -2.91 -0.02 4.08 16 34 H 0.42 12.05 6.92 -92.71 -0.64 11.40 16 35 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 36 H 0.18 1.44 8.06 -2.91 -0.02 1.42 16 37 H 0.17 1.70 6.29 -2.91 -0.02 1.68 16 38 H 0.13 1.37 7.65 -2.39 -0.02 1.35 16 39 H 0.13 1.25 7.67 -2.39 -0.02 1.23 16 40 H 0.41 3.53 8.93 -92.71 -0.83 2.70 16 41 H 0.42 0.01 8.83 -92.70 -0.82 -0.80 16 42 H 0.09 4.67 6.39 -2.91 -0.02 4.65 16 Total: -1.00 -93.18 360.52 1.70 -91.48 By element: Atomic # 1 Polarization: 31.22 SS G_CDS: -1.16 Total: 30.06 kcal Atomic # 6 Polarization: -25.22 SS G_CDS: 4.22 Total: -21.00 kcal Atomic # 7 Polarization: -78.11 SS G_CDS: -2.91 Total: -81.02 kcal Atomic # 8 Polarization: -65.68 SS G_CDS: -0.48 Total: -66.16 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -93.18 1.70 -91.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412371735.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.399 kcal (2) G-P(sol) polarization free energy of solvation -93.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds