Wall clock time and date at job start Sat Apr 11 2020 05:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 120.00271 * 2 1 4 4 H 1.48500 * 109.47234 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46554 * 300.00039 * 3 2 1 6 6 H 1.48493 * 109.47111 * 59.99586 * 3 2 1 7 7 C 1.38702 * 119.99871 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99687 * 179.97438 * 7 2 1 9 9 O 1.34808 * 120.00058 * 359.97438 * 7 2 1 10 10 C 1.35519 * 117.00030 * 174.94142 * 9 7 2 11 11 C 1.38837 * 120.16030 * 5.59877 * 10 9 7 12 12 C 1.38030 * 120.07369 * 180.02562 * 11 10 9 13 13 C 1.38574 * 120.39936 * 0.02562 * 12 11 10 14 14 C 1.37831 * 120.32463 * 359.73716 * 13 12 11 15 15 C 1.39671 * 119.91716 * 0.51675 * 14 13 12 16 16 C 1.47536 * 120.19579 * 179.77072 * 15 14 13 17 17 O 1.21592 * 119.99467 * 211.43779 * 16 15 14 18 18 N 1.34769 * 120.00243 * 31.43160 * 16 15 14 19 19 C 1.46380 * 119.84783 * 169.93415 * 18 16 15 20 20 C 1.52167 * 111.21140 * 116.59075 * 19 18 16 21 21 O 1.43090 * 110.33324 * 61.50646 * 20 19 18 22 22 C 1.35544 * 115.84884 * 270.51126 * 21 20 19 23 23 N 1.32492 * 120.03512 * 252.93811 * 22 21 20 24 24 C 1.31901 * 121.58815 * 174.49326 * 23 22 21 25 25 C 1.38098 * 121.22380 * 0.21227 * 24 23 22 26 26 C 1.39020 * 119.06206 * 0.95661 * 25 24 23 27 27 C 1.37808 * 118.04182 * 359.71943 * 26 25 24 28 28 C 1.46724 * 119.84678 * 349.95896 * 18 16 15 29 29 H 0.96997 * 119.99936 * 359.97438 * 1 2 3 30 30 H 1.07997 * 119.96707 * 0.05048 * 11 10 9 31 31 H 1.07996 * 119.80054 * 179.97438 * 12 11 10 32 32 H 1.08000 * 119.83749 * 180.02562 * 13 12 11 33 33 H 1.08001 * 120.04272 * 180.25521 * 14 13 12 34 34 H 1.08999 * 109.12833 * 237.02568 * 19 18 16 35 35 H 1.09004 * 109.12414 * 356.16842 * 19 18 16 36 36 H 1.09001 * 109.33364 * 181.70208 * 20 19 18 37 37 H 1.08991 * 109.34166 * 301.20874 * 20 19 18 38 38 H 1.08004 * 119.38833 * 180.23939 * 24 23 22 39 39 H 1.07996 * 120.46491 * 180.97360 * 25 24 23 40 40 H 1.08000 * 120.98392 * 179.74397 * 26 25 24 41 41 H 1.08993 * 109.59975 * 19.74811 * 28 18 16 42 42 H 1.09000 * 109.59851 * 140.06008 * 28 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0086 -1.2012 0.0005 8 1 3.0887 -1.2012 0.0001 9 8 1.3346 -2.3687 0.0016 10 6 2.0685 -3.5030 -0.1044 11 6 3.4554 -3.4402 -0.0910 12 6 4.2012 -4.5966 -0.1996 13 6 3.5744 -5.8263 -0.3231 14 6 2.1986 -5.9081 -0.3334 15 6 1.4308 -4.7460 -0.2298 16 6 -0.0423 -4.8260 -0.2452 17 8 -0.6957 -3.9149 -0.7159 18 7 -0.6638 -5.9089 0.2621 19 6 -2.1156 -5.8950 0.4487 20 6 -2.7928 -6.9416 -0.4239 21 8 -2.3397 -8.2522 -0.0708 22 6 -1.2421 -8.6958 -0.7309 23 7 -1.3605 -9.6333 -1.6595 24 6 -0.3327 -10.0113 -2.3947 25 6 0.9159 -9.4467 -2.2239 26 6 1.0899 -8.4764 -1.2435 27 6 -0.0040 -8.1173 -0.4862 28 6 0.1181 -7.0961 0.6254 29 1 -0.4850 0.8400 0.0004 30 1 3.9513 -2.4856 0.0050 31 1 5.2798 -4.5426 -0.1890 32 1 4.1668 -6.7254 -0.4071 33 1 1.7148 -6.8693 -0.4258 34 1 -2.3432 -6.1006 1.4946 35 1 -2.4998 -4.9091 0.1869 36 1 -3.8723 -6.8845 -0.2840 37 1 -2.5562 -6.7475 -1.4700 38 1 -0.4703 -10.7764 -3.1446 39 1 1.7454 -9.7543 -2.8432 40 1 2.0537 -8.0173 -1.0805 41 1 1.1644 -6.8195 0.7543 42 1 -0.2661 -7.5165 1.5548 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412791008.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:11 Heat of formation + Delta-G solvation = 9.717178 kcal Electronic energy + Delta-G solvation = -29956.873789 eV Core-core repulsion = 25869.975630 eV Total energy + Delta-G solvation = -4086.898160 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.51788 -41.18230 -40.02940 -39.10472 -38.25056 -36.87512 -34.36303 -34.17337 -32.97768 -31.99756 -30.72157 -30.00241 -27.79728 -27.43365 -25.54577 -24.98165 -23.26019 -23.12550 -22.98907 -21.07863 -20.04583 -19.29351 -18.92593 -18.35944 -17.68572 -17.52050 -16.93518 -16.75486 -16.41255 -16.30180 -15.97381 -15.87418 -15.65203 -15.53920 -15.15687 -14.83440 -14.62941 -14.28353 -14.08611 -14.03469 -13.68554 -13.60725 -13.26250 -13.24057 -12.96414 -12.60696 -12.52907 -12.31703 -12.12343 -12.05540 -11.76028 -11.47381 -10.92430 -10.86007 -10.70203 -10.38146 -9.92893 -9.82494 -9.77993 -9.06763 -8.47921 -6.18622 -0.18801 0.09109 0.13608 0.65030 1.31904 1.42035 1.51605 1.79100 1.91603 2.07498 2.13979 2.78250 2.85360 3.11935 3.36833 3.41067 3.55562 3.62654 3.78956 3.83411 3.88403 3.93819 4.00824 4.10488 4.22775 4.27889 4.33873 4.45353 4.50504 4.55375 4.58846 4.62178 4.71142 4.89034 4.99140 5.03788 5.06995 5.13493 5.41060 5.43845 5.45403 5.56072 5.66318 5.92633 6.09921 6.12660 6.27480 6.89579 6.92509 7.20386 7.75417 8.73457 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016633 B = 0.003654 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.030057 B = 7660.407600 C = 8919.506746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.022 4.022 3 Si 1.022 2.978 4 H -0.244 1.244 5 H -0.271 1.271 6 H -0.268 1.268 7 C -0.424 4.424 8 H 0.109 0.891 9 O -0.201 6.201 10 C 0.150 3.850 11 C -0.251 4.251 12 C -0.039 4.039 13 C -0.193 4.193 14 C -0.090 4.090 15 C -0.238 4.238 16 C 0.557 3.443 17 O -0.567 6.567 18 N -0.610 5.610 19 C 0.078 3.922 20 C 0.070 3.930 21 O -0.324 6.324 22 C 0.290 3.710 23 N -0.523 5.523 24 C 0.113 3.887 25 C -0.160 4.160 26 C -0.072 4.072 27 C -0.190 4.190 28 C 0.115 3.885 29 H 0.271 0.729 30 H 0.125 0.875 31 H 0.158 0.842 32 H 0.174 0.826 33 H 0.188 0.812 34 H 0.100 0.900 35 H 0.084 0.916 36 H 0.144 0.856 37 H 0.044 0.956 38 H 0.194 0.806 39 H 0.185 0.815 40 H 0.178 0.822 41 H 0.140 0.860 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.684 -20.543 -1.315 21.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.221 4.221 3 Si 0.841 3.159 4 H -0.167 1.167 5 H -0.196 1.196 6 H -0.193 1.193 7 C -0.499 4.499 8 H 0.126 0.874 9 O -0.104 6.104 10 C 0.095 3.905 11 C -0.270 4.270 12 C -0.057 4.057 13 C -0.211 4.211 14 C -0.107 4.107 15 C -0.242 4.242 16 C 0.349 3.651 17 O -0.445 6.445 18 N -0.343 5.343 19 C -0.045 4.045 20 C -0.006 4.006 21 O -0.237 6.237 22 C 0.112 3.888 23 N -0.240 5.240 24 C -0.044 4.044 25 C -0.179 4.179 26 C -0.097 4.097 27 C -0.195 4.195 28 C -0.007 4.007 29 H 0.080 0.920 30 H 0.143 0.857 31 H 0.176 0.824 32 H 0.192 0.808 33 H 0.204 0.796 34 H 0.118 0.882 35 H 0.103 0.897 36 H 0.162 0.838 37 H 0.062 0.938 38 H 0.211 0.789 39 H 0.203 0.797 40 H 0.195 0.805 41 H 0.157 0.843 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.924 -20.291 -1.475 20.932 hybrid contribution 0.371 1.849 0.144 1.891 sum 5.295 -18.442 -1.332 19.233 Atomic orbital electron populations 1.70292 1.08394 1.28608 1.47214 1.26747 0.96742 1.03110 0.95512 0.84498 0.78518 0.74458 0.78461 1.16685 1.19638 1.19282 1.22047 0.92727 0.81480 1.53672 0.87365 1.84067 1.35688 1.12402 1.78273 1.19977 0.91773 0.87118 0.91629 1.21333 0.92074 1.01191 1.12385 1.21477 1.00891 0.91130 0.92224 1.21280 0.93367 0.98931 1.07521 1.22699 0.95305 0.97230 0.95431 1.19122 0.91938 0.93103 1.20066 1.18710 0.88537 0.81158 0.76718 1.90837 1.67929 1.39621 1.46134 1.47758 1.07601 1.14381 1.64575 1.21974 0.79932 1.00601 1.01953 1.23147 1.00818 0.78919 0.97706 1.86005 1.43657 1.33821 1.60223 1.19429 0.86217 0.92369 0.90784 1.67173 1.36622 1.15012 1.05235 1.23269 0.87533 0.98026 0.95543 1.22693 0.99930 0.96503 0.98812 1.22034 0.99062 0.95350 0.93276 1.21506 0.95382 1.00841 1.01745 1.21710 1.00765 0.82454 0.95737 0.91996 0.85741 0.82410 0.80838 0.79582 0.88177 0.89740 0.83841 0.93752 0.78927 0.79723 0.80511 0.84290 0.87668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -58.79 13.67 21.62 0.30 -58.50 16 2 C -0.02 -1.30 5.49 84.85 0.47 -0.84 16 3 Si 1.02 43.64 29.55 68.60 2.03 45.67 16 4 H -0.24 -9.34 7.11 99.48 0.71 -8.64 16 5 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 6 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 7 C -0.42 -25.20 9.49 67.93 0.64 -24.55 16 8 H 0.11 5.74 5.21 -2.91 -0.02 5.73 16 9 O -0.20 -12.59 8.31 -2.08 -0.02 -12.61 16 10 C 0.15 7.54 6.63 22.91 0.15 7.69 16 11 C -0.25 -10.24 9.16 22.36 0.20 -10.03 16 12 C -0.04 -1.11 10.03 22.30 0.22 -0.89 16 13 C -0.19 -4.58 10.01 22.25 0.22 -4.35 16 14 C -0.09 -2.63 6.95 22.52 0.16 -2.48 16 15 C -0.24 -10.26 5.63 -19.99 -0.11 -10.37 16 16 C 0.56 25.85 7.31 86.70 0.63 26.48 16 17 O -0.57 -33.14 15.18 13.90 0.21 -32.93 16 18 N -0.61 -21.41 2.70 -829.90 -2.24 -23.65 16 19 C 0.08 2.44 6.23 86.13 0.54 2.98 16 20 C 0.07 1.88 6.65 71.71 0.48 2.36 16 21 O -0.32 -9.20 9.97 -88.49 -0.88 -10.09 16 22 C 0.29 7.98 6.69 84.73 0.57 8.55 16 23 N -0.52 -13.51 10.40 -308.90 -3.21 -16.73 16 24 C 0.11 1.95 11.15 84.65 0.94 2.89 16 25 C -0.16 -2.19 10.13 22.42 0.23 -1.96 16 26 C -0.07 -1.28 9.00 22.36 0.20 -1.08 16 27 C -0.19 -4.61 5.38 -19.59 -0.11 -4.71 16 28 C 0.11 3.00 5.18 85.83 0.44 3.44 16 29 H 0.27 16.03 8.31 -92.71 -0.77 15.26 16 30 H 0.12 5.17 5.64 -2.91 -0.02 5.15 16 31 H 0.16 3.13 8.06 -2.91 -0.02 3.10 16 32 H 0.17 2.21 8.06 -2.91 -0.02 2.19 16 33 H 0.19 4.27 0.67 -2.91 0.00 4.27 16 34 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 35 H 0.08 3.13 6.94 -2.38 -0.02 3.11 16 36 H 0.14 2.90 8.14 -2.39 -0.02 2.88 16 37 H 0.04 1.35 7.87 -2.39 -0.02 1.33 16 38 H 0.19 1.86 8.06 -2.91 -0.02 1.84 16 39 H 0.19 0.96 8.06 -2.91 -0.02 0.94 16 40 H 0.18 2.32 5.48 -2.91 -0.02 2.31 16 41 H 0.14 3.39 3.61 -8.63 -0.03 3.36 16 42 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -91.82 342.58 3.15 -88.67 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: 1.08 Total: 27.04 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: 5.88 Total: -6.87 kcal Atomic # 7 Polarization: -93.72 SS G_CDS: -5.15 Total: -98.87 kcal Atomic # 8 Polarization: -54.94 SS G_CDS: -0.69 Total: -55.63 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -91.82 3.15 -88.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412791008.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.387 kcal (2) G-P(sol) polarization free energy of solvation -91.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds