Wall clock time and date at job start Sat Apr 11 2020 05:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86802 * 120.00107 * 2 1 4 4 H 1.48495 * 109.47471 * 270.00335 * 3 2 1 5 5 H 1.48499 * 109.46923 * 30.00347 * 3 2 1 6 6 H 1.48504 * 109.46834 * 150.00249 * 3 2 1 7 7 C 1.39932 * 120.00030 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99929 * 196.79109 * 7 2 1 9 9 C 1.41412 * 119.99824 * 16.78918 * 7 2 1 10 10 C 1.40772 * 120.20929 * 25.16803 * 9 7 2 11 11 C 1.37644 * 119.88637 * 179.97438 * 10 9 7 12 12 C 1.38536 * 120.31754 * 0.02562 * 11 10 9 13 13 C 1.39243 * 120.43132 * 359.95638 * 12 11 10 14 14 N 1.39937 * 119.94833 * 180.02562 * 13 12 11 15 15 C 1.34775 * 120.00390 * 145.79218 * 14 13 12 16 16 O 1.21287 * 119.99725 * 354.88865 * 15 14 13 17 17 C 1.50697 * 120.00068 * 174.89014 * 15 14 13 18 18 N 1.46501 * 109.47235 * 179.97438 * 17 15 14 19 19 C 1.34771 * 120.00488 * 179.97438 * 18 17 15 20 20 O 1.21553 * 119.99928 * 359.97438 * 19 18 17 21 21 C 1.47858 * 120.00345 * 180.02562 * 19 18 17 22 22 C 1.39600 * 120.11622 * 359.97438 * 21 19 18 23 23 C 1.37962 * 119.96515 * 180.02562 * 22 21 19 24 24 C 1.38292 * 120.20789 * 359.72904 * 23 22 21 25 25 C 1.38808 * 120.23212 * 0.54240 * 24 23 22 26 26 O 1.35912 * 119.98117 * 179.72577 * 25 24 23 27 27 C 1.38495 * 120.03567 * 359.45835 * 25 24 23 28 28 C 1.38283 * 120.10519 * 0.27340 * 13 12 11 29 29 H 0.96993 * 119.99884 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.06372 * 0.02562 * 10 9 7 31 31 H 1.07997 * 119.84466 * 179.97438 * 11 10 9 32 32 H 1.08009 * 119.78012 * 179.97438 * 12 11 10 33 33 H 0.97001 * 120.00014 * 325.78449 * 14 13 12 34 34 H 1.08997 * 109.47170 * 60.00079 * 17 15 14 35 35 H 1.09001 * 109.46743 * 299.99278 * 17 15 14 36 36 H 0.97005 * 119.99477 * 0.02562 * 18 17 15 37 37 H 1.08006 * 120.02075 * 359.97438 * 22 21 19 38 38 H 1.08005 * 119.89751 * 180.02562 * 23 22 21 39 39 H 1.07998 * 119.87920 * 180.29610 * 24 23 22 40 40 H 0.96698 * 114.00551 * 269.72923 * 26 25 24 41 41 H 1.07997 * 120.10136 * 180.24669 * 27 25 24 42 42 H 1.08003 * 120.15905 * 179.72821 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4898 2.0465 -1.4000 5 1 1.4398 2.6526 0.7001 6 1 3.5400 1.4400 0.7000 7 6 2.0080 -1.2118 -0.0005 8 1 3.0534 -1.2319 0.2696 9 6 1.3461 -2.4102 -0.3548 10 6 0.2108 -2.3732 -1.1863 11 6 -0.4280 -3.5437 -1.5274 12 6 0.0406 -4.7592 -1.0559 13 6 1.1626 -4.8112 -0.2330 14 7 1.6275 -6.0445 0.2372 15 6 2.9493 -6.2463 0.4067 16 8 3.7416 -5.3939 0.0651 17 6 3.4427 -7.5311 1.0207 18 7 4.9056 -7.5066 1.0949 19 6 5.5718 -8.5574 1.6129 20 8 4.9589 -9.5253 2.0191 21 6 7.0483 -8.5324 1.6883 22 6 7.7547 -7.4219 1.2230 23 6 9.1324 -7.4021 1.2943 24 6 9.8168 -8.4774 1.8308 25 6 9.1232 -9.5883 2.2908 26 8 9.8014 -10.6445 2.8120 27 6 7.7402 -9.6186 2.2240 28 6 1.8152 -3.6457 0.1247 29 1 -0.4849 0.8400 0.0004 30 1 -0.1579 -1.4281 -1.5567 31 1 -1.2992 -3.5145 -2.1650 32 1 -0.4676 -5.6724 -1.3287 33 1 0.9985 -6.7542 0.4411 34 1 3.1245 -8.3732 0.4062 35 1 3.0295 -7.6365 2.0238 36 1 5.3947 -6.7337 0.7717 37 1 7.2232 -6.5789 0.8067 38 1 9.6778 -6.5422 0.9344 39 1 10.8950 -8.4543 1.8885 40 1 10.0444 -11.3163 2.1603 41 1 7.1993 -10.4807 2.5852 42 1 2.6829 -3.6847 0.7665 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412974063.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:13 Heat of formation + Delta-G solvation = -63.400108 kcal Electronic energy + Delta-G solvation = -27152.630232 eV Core-core repulsion = 23062.561469 eV Total energy + Delta-G solvation = -4090.068763 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.71338 -39.92619 -39.04144 -37.31601 -36.86331 -34.84779 -34.42362 -33.14080 -31.66976 -30.37389 -29.88815 -29.05099 -27.10692 -25.35626 -24.08015 -22.88439 -21.75521 -20.95411 -20.78682 -19.90664 -19.10829 -17.95196 -17.39848 -16.81288 -16.53575 -16.00450 -15.97089 -15.71584 -15.35507 -15.26958 -14.97774 -14.72933 -14.51517 -14.13774 -14.04935 -13.39808 -13.20279 -12.91489 -12.80686 -12.61518 -12.43828 -12.16033 -12.04351 -11.71977 -11.26973 -11.18159 -11.11158 -10.99213 -10.50708 -10.30673 -10.24463 -9.75693 -9.57180 -9.50595 -9.30194 -9.15730 -9.09959 -9.09186 -7.51799 -7.01631 -6.76823 -4.39354 0.43031 0.86047 2.38945 2.51835 2.69658 2.77524 3.06476 3.10790 3.13441 3.25211 3.40251 3.54091 3.80537 3.92543 4.34818 4.48906 4.59141 4.72348 4.73521 4.80373 5.05300 5.17050 5.20496 5.31522 5.49856 5.65231 5.86812 5.93017 5.94554 6.04837 6.18268 6.28952 6.32418 6.61117 6.91888 6.96598 7.00285 7.19371 7.21328 7.26428 7.44582 7.63761 7.88598 7.92485 8.01666 8.06853 8.15119 8.47238 8.62570 8.87767 8.91983 10.16797 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014495 B = 0.002171 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.235693 B =12892.105867 C =14565.457966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.075 3.925 3 Si 0.909 3.091 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.458 4.458 8 H 0.079 0.921 9 C 0.119 3.881 10 C -0.169 4.169 11 C -0.092 4.092 12 C -0.259 4.259 13 C 0.148 3.852 14 N -0.660 5.660 15 C 0.500 3.500 16 O -0.517 6.517 17 C 0.101 3.899 18 N -0.709 5.709 19 C 0.562 3.438 20 O -0.538 6.538 21 C -0.116 4.116 22 C -0.091 4.091 23 C -0.109 4.109 24 C -0.120 4.120 25 C 0.095 3.905 26 O -0.496 6.496 27 C -0.086 4.086 28 C -0.210 4.210 29 H 0.280 0.720 30 H 0.120 0.880 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.402 0.598 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.413 0.587 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.133 0.867 40 H 0.392 0.608 41 H 0.143 0.857 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.311 -15.125 1.501 20.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.142 4.142 3 Si 0.734 3.266 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.487 4.487 8 H 0.097 0.903 9 C 0.116 3.884 10 C -0.189 4.189 11 C -0.111 4.111 12 C -0.281 4.281 13 C 0.057 3.943 14 N -0.304 5.304 15 C 0.285 3.715 16 O -0.392 6.392 17 C -0.026 4.026 18 N -0.365 5.365 19 C 0.349 3.651 20 O -0.417 6.417 21 C -0.119 4.119 22 C -0.110 4.110 23 C -0.127 4.127 24 C -0.139 4.139 25 C 0.050 3.950 26 O -0.307 6.307 27 C -0.105 4.105 28 C -0.231 4.231 29 H 0.091 0.909 30 H 0.137 0.863 31 H 0.111 0.889 32 H 0.108 0.892 33 H 0.236 0.764 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.253 0.747 37 H 0.153 0.847 38 H 0.154 0.846 39 H 0.151 0.849 40 H 0.248 0.752 41 H 0.161 0.839 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 13.169 -14.730 2.114 19.871 hybrid contribution 0.173 0.502 -0.434 0.686 sum 13.342 -14.228 1.680 19.577 Atomic orbital electron populations 1.69820 1.07539 1.29210 1.35378 1.25914 0.94759 1.01331 0.92237 0.86290 0.80504 0.80472 0.79343 1.19246 1.20327 1.18590 1.19582 0.97784 0.90923 1.40421 0.90333 1.17494 0.90926 0.91633 0.88362 1.21369 0.99274 0.96908 1.01344 1.20476 0.98542 0.92673 0.99445 1.20046 1.02269 0.97000 1.08746 1.17414 0.96342 0.83063 0.97502 1.43315 1.06618 1.15463 1.64967 1.20399 0.83168 0.88443 0.79448 1.90746 1.54426 1.45048 1.48975 1.21095 0.81631 0.96780 1.03138 1.45606 1.06602 1.20930 1.63334 1.18158 0.87102 0.82371 0.77490 1.90780 1.69350 1.33462 1.48065 1.19734 0.92675 0.95992 1.03534 1.21490 0.94775 0.97180 0.97577 1.21048 0.93902 0.98567 0.99153 1.21666 1.00930 0.93849 0.97432 1.18323 0.89679 0.89305 0.97664 1.84855 1.75624 1.32426 1.37746 1.21528 0.93379 0.98822 0.96759 1.20946 1.04357 0.90966 1.06856 0.90870 0.86264 0.88945 0.89171 0.76362 0.88205 0.88020 0.74690 0.84728 0.84570 0.84868 0.75230 0.83942 0.87653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.30 10.94 55.55 0.61 -19.69 16 2 C 0.08 1.88 5.16 -17.34 -0.09 1.79 16 3 Si 0.91 18.69 29.59 -169.99 -5.03 13.66 16 4 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 6 H -0.26 -5.36 7.11 56.52 0.40 -4.95 16 7 C -0.46 -12.23 9.05 -37.74 -0.34 -12.58 16 8 H 0.08 2.06 7.90 -52.49 -0.41 1.65 16 9 C 0.12 3.18 5.57 -106.85 -0.59 2.59 16 10 C -0.17 -4.34 8.69 -38.84 -0.34 -4.67 16 11 C -0.09 -2.10 10.02 -39.69 -0.40 -2.49 16 12 C -0.26 -5.50 9.97 -39.10 -0.39 -5.89 16 13 C 0.15 3.20 6.25 -83.77 -0.52 2.67 16 14 N -0.66 -10.80 5.34 -9.91 -0.05 -10.85 16 15 C 0.50 7.96 7.63 -10.99 -0.08 7.88 16 16 O -0.52 -10.16 13.42 5.55 0.07 -10.09 16 17 C 0.10 1.22 6.16 -5.19 -0.03 1.18 16 18 N -0.71 -8.70 5.48 -62.43 -0.34 -9.04 16 19 C 0.56 7.20 7.77 -12.33 -0.10 7.10 16 20 O -0.54 -8.26 16.35 5.32 0.09 -8.17 16 21 C -0.12 -1.27 5.87 -104.99 -0.62 -1.88 16 22 C -0.09 -0.84 9.54 -39.17 -0.37 -1.21 16 23 C -0.11 -0.84 10.03 -39.66 -0.40 -1.23 16 24 C -0.12 -0.92 9.98 -39.35 -0.39 -1.31 16 25 C 0.09 0.84 6.70 -39.28 -0.26 0.57 16 26 O -0.50 -3.78 13.50 -19.46 -0.26 -4.04 16 27 C -0.09 -0.88 9.53 -39.02 -0.37 -1.25 16 28 C -0.21 -5.22 8.39 -38.68 -0.32 -5.55 16 29 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 30 H 0.12 3.14 6.17 -52.49 -0.32 2.82 16 31 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 32 H 0.09 1.64 8.06 -52.48 -0.42 1.21 16 33 H 0.40 4.96 8.82 -40.82 -0.36 4.60 16 34 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.41 4.96 5.47 -40.82 -0.22 4.74 16 37 H 0.13 1.11 6.40 -52.48 -0.34 0.78 16 38 H 0.14 0.75 8.06 -52.48 -0.42 0.32 16 39 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 40 H 0.39 1.04 9.06 45.56 0.41 1.45 16 41 H 0.14 1.50 7.65 -52.49 -0.40 1.10 16 42 H 0.11 2.67 6.48 -52.48 -0.34 2.33 16 LS Contribution 366.98 15.07 5.53 5.53 Total: -1.00 -33.22 366.98 -8.67 -41.89 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -3.66 Total: 15.09 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: -5.63 Total: -14.28 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: 0.21 Total: -39.59 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: -0.10 Total: -22.30 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.66 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.22 -8.67 -41.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412974063.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.511 kcal (2) G-P(sol) polarization free energy of solvation -33.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds