Wall clock time and date at job start Sat Apr 11 2020 05:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86802 * 120.00107 * 2 1 4 4 H 1.48495 * 109.47471 * 270.00335 * 3 2 1 5 5 H 1.48499 * 109.46923 * 30.00347 * 3 2 1 6 6 H 1.48504 * 109.46834 * 150.00249 * 3 2 1 7 7 C 1.39932 * 120.00030 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99929 * 196.79109 * 7 2 1 9 9 C 1.41412 * 119.99824 * 16.78918 * 7 2 1 10 10 C 1.40772 * 120.20929 * 25.16803 * 9 7 2 11 11 C 1.37644 * 119.88637 * 179.97438 * 10 9 7 12 12 C 1.38536 * 120.31754 * 0.02562 * 11 10 9 13 13 C 1.39243 * 120.43132 * 359.95638 * 12 11 10 14 14 N 1.39937 * 119.94833 * 180.02562 * 13 12 11 15 15 C 1.34775 * 120.00390 * 145.79218 * 14 13 12 16 16 O 1.21287 * 119.99725 * 354.88865 * 15 14 13 17 17 C 1.50697 * 120.00068 * 174.89014 * 15 14 13 18 18 N 1.46501 * 109.47235 * 179.97438 * 17 15 14 19 19 C 1.34771 * 120.00488 * 179.97438 * 18 17 15 20 20 O 1.21553 * 119.99928 * 359.97438 * 19 18 17 21 21 C 1.47858 * 120.00345 * 180.02562 * 19 18 17 22 22 C 1.39600 * 120.11622 * 359.97438 * 21 19 18 23 23 C 1.37962 * 119.96515 * 180.02562 * 22 21 19 24 24 C 1.38292 * 120.20789 * 359.72904 * 23 22 21 25 25 C 1.38808 * 120.23212 * 0.54240 * 24 23 22 26 26 O 1.35912 * 119.98117 * 179.72577 * 25 24 23 27 27 C 1.38495 * 120.03567 * 359.45835 * 25 24 23 28 28 C 1.38283 * 120.10519 * 0.27340 * 13 12 11 29 29 H 0.96993 * 119.99884 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.06372 * 0.02562 * 10 9 7 31 31 H 1.07997 * 119.84466 * 179.97438 * 11 10 9 32 32 H 1.08009 * 119.78012 * 179.97438 * 12 11 10 33 33 H 0.97001 * 120.00014 * 325.78449 * 14 13 12 34 34 H 1.08997 * 109.47170 * 60.00079 * 17 15 14 35 35 H 1.09001 * 109.46743 * 299.99278 * 17 15 14 36 36 H 0.97005 * 119.99477 * 0.02562 * 18 17 15 37 37 H 1.08006 * 120.02075 * 359.97438 * 22 21 19 38 38 H 1.08005 * 119.89751 * 180.02562 * 23 22 21 39 39 H 1.07998 * 119.87920 * 180.29610 * 24 23 22 40 40 H 0.96698 * 114.00551 * 269.72923 * 26 25 24 41 41 H 1.07997 * 120.10136 * 180.24669 * 27 25 24 42 42 H 1.08003 * 120.15905 * 179.72821 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4898 2.0465 -1.4000 5 1 1.4398 2.6526 0.7001 6 1 3.5400 1.4400 0.7000 7 6 2.0080 -1.2118 -0.0005 8 1 3.0534 -1.2319 0.2696 9 6 1.3461 -2.4102 -0.3548 10 6 0.2108 -2.3732 -1.1863 11 6 -0.4280 -3.5437 -1.5274 12 6 0.0406 -4.7592 -1.0559 13 6 1.1626 -4.8112 -0.2330 14 7 1.6275 -6.0445 0.2372 15 6 2.9493 -6.2463 0.4067 16 8 3.7416 -5.3939 0.0651 17 6 3.4427 -7.5311 1.0207 18 7 4.9056 -7.5066 1.0949 19 6 5.5718 -8.5574 1.6129 20 8 4.9589 -9.5253 2.0191 21 6 7.0483 -8.5324 1.6883 22 6 7.7547 -7.4219 1.2230 23 6 9.1324 -7.4021 1.2943 24 6 9.8168 -8.4774 1.8308 25 6 9.1232 -9.5883 2.2908 26 8 9.8014 -10.6445 2.8120 27 6 7.7402 -9.6186 2.2240 28 6 1.8152 -3.6457 0.1247 29 1 -0.4849 0.8400 0.0004 30 1 -0.1579 -1.4281 -1.5567 31 1 -1.2992 -3.5145 -2.1650 32 1 -0.4676 -5.6724 -1.3287 33 1 0.9985 -6.7542 0.4411 34 1 3.1245 -8.3732 0.4062 35 1 3.0295 -7.6365 2.0238 36 1 5.3947 -6.7337 0.7717 37 1 7.2232 -6.5789 0.8067 38 1 9.6778 -6.5422 0.9344 39 1 10.8950 -8.4543 1.8885 40 1 10.0444 -11.3163 2.1603 41 1 7.1993 -10.4807 2.5852 42 1 2.6829 -3.6847 0.7665 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412974063.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:13 Heat of formation + Delta-G solvation = -87.422414 kcal Electronic energy + Delta-G solvation = -27153.671917 eV Core-core repulsion = 23062.561469 eV Total energy + Delta-G solvation = -4091.110448 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.73248 -41.08927 -39.96598 -38.99990 -37.52514 -36.34378 -35.65748 -34.87976 -32.41781 -31.76022 -31.18801 -30.40454 -28.39576 -27.24442 -24.95387 -23.59686 -23.25411 -22.71622 -21.70392 -21.35689 -20.03221 -19.56574 -18.38425 -17.76820 -17.63945 -17.28658 -17.05738 -16.97669 -16.64983 -16.44916 -16.09978 -16.06774 -15.82572 -15.20747 -15.01425 -14.75376 -14.66115 -14.33274 -14.10216 -13.76462 -13.52281 -13.26036 -13.20554 -13.00204 -12.92432 -12.78516 -12.72059 -12.18713 -12.00985 -11.79439 -11.54001 -11.21855 -11.19996 -10.94370 -10.75674 -10.44375 -10.06492 -9.76675 -9.40442 -8.78275 -8.61699 -6.37111 -0.30557 0.19911 0.80209 0.98864 1.36956 1.47007 1.50082 1.62622 1.64943 1.71695 2.20581 2.33460 2.67584 2.73130 3.19844 3.47434 3.60962 3.74601 3.85511 4.04998 4.12485 4.24939 4.27006 4.40076 4.46623 4.62796 4.65926 4.87977 4.98866 5.05552 5.09146 5.11194 5.15760 5.22085 5.29188 5.30653 5.32233 5.68818 5.72209 5.83822 6.07748 6.09948 6.27917 6.32714 6.51792 6.67618 6.80138 6.93065 6.94968 6.99881 7.17751 8.32835 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014495 B = 0.002171 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.235693 B =12892.105867 C =14565.457966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.036 3.964 3 Si 0.981 3.019 4 H -0.261 1.261 5 H -0.264 1.264 6 H -0.263 1.263 7 C -0.500 4.500 8 H 0.065 0.935 9 C 0.087 3.913 10 C -0.197 4.197 11 C -0.093 4.093 12 C -0.249 4.249 13 C 0.157 3.843 14 N -0.650 5.650 15 C 0.502 3.498 16 O -0.555 6.555 17 C 0.111 3.889 18 N -0.710 5.710 19 C 0.563 3.437 20 O -0.569 6.569 21 C -0.134 4.134 22 C -0.098 4.098 23 C -0.105 4.105 24 C -0.114 4.114 25 C 0.096 3.904 26 O -0.506 6.506 27 C -0.101 4.101 28 C -0.234 4.234 29 H 0.289 0.711 30 H 0.103 0.897 31 H 0.122 0.878 32 H 0.133 0.867 33 H 0.425 0.575 34 H 0.125 0.875 35 H 0.118 0.882 36 H 0.415 0.585 37 H 0.139 0.861 38 H 0.162 0.838 39 H 0.159 0.841 40 H 0.413 0.587 41 H 0.132 0.868 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.118 -16.189 1.195 21.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.178 4.178 3 Si 0.802 3.198 4 H -0.185 1.185 5 H -0.189 1.189 6 H -0.187 1.187 7 C -0.529 4.529 8 H 0.084 0.916 9 C 0.085 3.915 10 C -0.217 4.217 11 C -0.111 4.111 12 C -0.270 4.270 13 C 0.064 3.936 14 N -0.296 5.296 15 C 0.290 3.710 16 O -0.433 6.433 17 C -0.015 4.015 18 N -0.364 5.364 19 C 0.352 3.648 20 O -0.449 6.449 21 C -0.137 4.137 22 C -0.116 4.116 23 C -0.123 4.123 24 C -0.132 4.132 25 C 0.051 3.949 26 O -0.319 6.319 27 C -0.120 4.120 28 C -0.256 4.256 29 H 0.100 0.900 30 H 0.121 0.879 31 H 0.140 0.860 32 H 0.150 0.850 33 H 0.264 0.736 34 H 0.142 0.858 35 H 0.136 0.864 36 H 0.254 0.746 37 H 0.157 0.843 38 H 0.180 0.820 39 H 0.177 0.823 40 H 0.273 0.727 41 H 0.150 0.850 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 13.960 -15.852 1.804 21.199 hybrid contribution -0.047 0.642 -0.345 0.730 sum 13.913 -15.210 1.459 20.665 Atomic orbital electron populations 1.69857 1.08745 1.30539 1.35693 1.26706 0.95586 1.04288 0.91259 0.85223 0.78974 0.76013 0.79605 1.18519 1.18856 1.18690 1.19740 0.97581 0.92557 1.43038 0.91635 1.17841 0.91928 0.92511 0.89250 1.21326 1.00066 0.97563 1.02697 1.20842 0.98907 0.92254 0.99129 1.20488 1.01527 0.98059 1.06893 1.17463 0.95699 0.84060 0.96400 1.43183 1.07484 1.14337 1.64614 1.21037 0.82518 0.89138 0.78298 1.90742 1.55403 1.46752 1.50398 1.21113 0.81605 0.94834 1.03985 1.45646 1.06727 1.20911 1.63159 1.18442 0.87927 0.81768 0.76692 1.90754 1.70116 1.34487 1.49582 1.19664 0.91608 0.97157 1.05289 1.21614 0.95662 0.96754 0.97598 1.21369 0.93292 0.99353 0.98281 1.21965 1.02206 0.92976 0.96095 1.18388 0.89173 0.90113 0.97227 1.84800 1.75284 1.32859 1.38995 1.21545 0.94282 0.98540 0.97646 1.20935 1.04727 0.92050 1.07867 0.90045 0.87898 0.86036 0.84951 0.73632 0.85752 0.86406 0.74561 0.84345 0.82022 0.82339 0.72750 0.84994 0.89297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.25 10.94 21.82 0.24 -43.01 16 2 C 0.04 1.88 5.16 85.25 0.44 2.32 16 3 Si 0.98 39.16 29.59 68.60 2.03 41.19 16 4 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 5 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 6 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 7 C -0.50 -28.14 9.05 23.46 0.21 -27.93 16 8 H 0.07 3.68 7.90 -2.91 -0.02 3.66 16 9 C 0.09 4.88 5.57 -21.31 -0.12 4.77 16 10 C -0.20 -10.34 8.69 22.75 0.20 -10.14 16 11 C -0.09 -4.10 10.02 22.20 0.22 -3.88 16 12 C -0.25 -9.95 9.97 22.58 0.23 -9.73 16 13 C 0.16 6.63 6.25 38.10 0.24 6.87 16 14 N -0.65 -20.10 5.34 -303.66 -1.62 -21.72 16 15 C 0.50 15.52 7.63 87.66 0.67 16.19 16 16 O -0.56 -22.10 13.42 -3.05 -0.04 -22.14 16 17 C 0.11 2.50 6.16 85.63 0.53 3.03 16 18 N -0.71 -17.00 5.48 -469.70 -2.57 -19.57 16 19 C 0.56 14.32 7.77 86.79 0.67 14.99 16 20 O -0.57 -17.37 16.35 -3.88 -0.06 -17.43 16 21 C -0.13 -2.90 5.87 -20.10 -0.12 -3.01 16 22 C -0.10 -1.71 9.54 22.53 0.21 -1.49 16 23 C -0.11 -1.39 10.03 22.22 0.22 -1.17 16 24 C -0.11 -1.47 9.98 22.42 0.22 -1.24 16 25 C 0.10 1.56 6.70 22.47 0.15 1.71 16 26 O -0.51 -6.88 13.50 -92.56 -1.25 -8.13 16 27 C -0.10 -2.06 9.53 22.63 0.22 -1.84 16 28 C -0.23 -12.02 8.39 22.85 0.19 -11.83 16 29 H 0.29 13.64 8.30 -92.71 -0.77 12.87 16 30 H 0.10 5.64 6.17 -2.91 -0.02 5.63 16 31 H 0.12 4.59 8.06 -2.91 -0.02 4.56 16 32 H 0.13 4.18 8.06 -2.91 -0.02 4.16 16 33 H 0.43 9.15 8.82 -92.71 -0.82 8.33 16 34 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.41 9.92 5.47 -92.70 -0.51 9.41 16 37 H 0.14 2.24 6.40 -2.91 -0.02 2.22 16 38 H 0.16 1.29 8.06 -2.91 -0.02 1.27 16 39 H 0.16 1.22 8.06 -2.91 -0.02 1.20 16 40 H 0.41 1.45 9.06 -74.06 -0.67 0.77 16 41 H 0.13 2.88 7.65 -2.91 -0.02 2.85 16 42 H 0.09 4.75 6.48 -2.91 -0.02 4.73 16 Total: -1.00 -75.36 366.98 0.23 -75.13 By element: Atomic # 1 Polarization: 38.95 SS G_CDS: -0.88 Total: 38.07 kcal Atomic # 6 Polarization: -26.78 SS G_CDS: 4.39 Total: -22.39 kcal Atomic # 7 Polarization: -80.35 SS G_CDS: -3.95 Total: -84.30 kcal Atomic # 8 Polarization: -46.35 SS G_CDS: -1.35 Total: -47.70 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 2.03 Total: 41.19 kcal Total: -75.36 0.23 -75.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412974063.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.292 kcal (2) G-P(sol) polarization free energy of solvation -75.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds