Wall clock time and date at job start Sat Apr 11 2020 05:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30751 * 1 3 3 Si 1.86793 * 119.99915 * 2 1 4 4 H 1.48502 * 109.47523 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.46879 * 120.00284 * 3 2 1 6 6 H 1.48503 * 109.47121 * 239.99897 * 3 2 1 7 7 C 1.40024 * 119.99454 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00934 * 1.90632 * 7 2 1 9 9 C 1.41346 * 119.99563 * 181.90894 * 7 2 1 10 10 C 1.40610 * 119.78713 * 187.00324 * 9 7 2 11 11 C 1.38308 * 119.13069 * 179.76895 * 10 9 7 12 12 C 1.38699 * 118.66233 * 0.49463 * 11 10 9 13 13 C 1.39629 * 119.49825 * 359.74596 * 12 11 10 14 14 N 1.39272 * 119.57314 * 179.97438 * 13 12 11 15 15 C 1.34782 * 119.99903 * 18.88745 * 14 13 12 16 16 O 1.21272 * 119.99747 * 5.60432 * 15 14 13 17 17 C 1.50697 * 119.99770 * 185.60334 * 15 14 13 18 18 C 1.53004 * 109.46847 * 180.02562 * 17 15 14 19 19 C 1.50701 * 109.47197 * 179.97438 * 18 17 15 20 20 C 1.38280 * 119.98655 * 264.72466 * 19 18 17 21 21 C 1.38213 * 120.14217 * 179.67589 * 20 19 18 22 22 C 1.38282 * 120.14127 * 0.65354 * 21 20 19 23 23 C 1.38494 * 120.03075 * 359.63208 * 22 21 20 24 24 C 1.38505 * 119.98271 * 84.99580 * 19 18 17 25 25 O 1.36493 * 131.54673 * 0.02909 * 24 19 18 26 26 C 1.43983 * 105.49199 * 162.67496 * 25 24 19 27 27 O 1.36501 * 131.54062 * 180.02562 * 23 22 21 28 28 N 1.31923 * 120.85423 * 0.02562 * 13 12 11 29 29 H 0.96998 * 119.99961 * 174.82634 * 1 2 3 30 30 H 1.08005 * 120.43766 * 359.97438 * 10 9 7 31 31 H 1.08002 * 120.66880 * 180.22146 * 11 10 9 32 32 H 1.08004 * 120.24720 * 179.77102 * 12 11 10 33 33 H 0.96997 * 120.00116 * 198.88838 * 14 13 12 34 34 H 1.09003 * 109.47399 * 299.99765 * 17 15 14 35 35 H 1.08999 * 109.47436 * 60.00523 * 17 15 14 36 36 H 1.08997 * 109.46890 * 299.99547 * 18 17 15 37 37 H 1.08994 * 109.47490 * 59.99845 * 18 17 15 38 38 H 1.08000 * 119.92916 * 0.02562 * 20 19 18 39 39 H 1.07996 * 119.92825 * 180.28027 * 21 20 19 40 40 H 1.08004 * 119.98082 * 179.65210 * 22 21 20 41 41 H 1.08998 * 110.57605 * 268.56304 * 26 25 24 42 42 H 1.09008 * 110.69621 * 145.75150 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 1.2765 2.7465 0.0006 5 1 3.0952 1.6963 1.2125 6 1 3.0952 1.6964 -1.2125 7 6 2.0075 -1.2127 -0.0005 8 1 1.4680 -2.1478 -0.0321 9 6 3.4204 -1.2131 0.0402 10 6 4.1232 -2.4218 -0.1090 11 6 5.5057 -2.4058 -0.0718 12 6 6.1520 -1.1941 0.1228 13 6 5.3976 -0.0283 0.2697 14 7 6.0449 1.1891 0.4656 15 6 7.3466 1.3202 0.1412 16 8 7.9273 0.4120 -0.4144 17 6 8.0801 2.5951 0.4689 18 6 9.5314 2.4841 -0.0028 19 6 10.2648 3.7593 0.3243 20 6 10.3829 4.7530 -0.6301 21 6 11.0491 5.9265 -0.3314 22 6 11.6121 6.1065 0.9187 23 6 11.5028 5.1133 1.8776 24 6 10.8251 3.9332 1.5789 25 8 10.8563 3.1227 2.6767 26 6 11.9070 3.6453 3.5109 27 8 11.9580 5.0414 3.1625 28 7 4.0796 -0.0654 0.2263 29 1 -0.4850 -0.8366 -0.0757 30 1 3.5905 -3.3501 -0.2542 31 1 6.0705 -3.3191 -0.1873 32 1 7.2306 -1.1526 0.1599 33 1 5.5591 1.9427 0.8355 34 1 7.5974 3.4321 -0.0358 35 1 8.0595 2.7596 1.5462 36 1 10.0143 1.6472 0.5015 37 1 9.5517 2.3199 -1.0801 38 1 9.9488 4.6140 -1.6092 39 1 11.1354 6.7021 -1.0780 40 1 12.1369 7.0223 1.1475 41 1 12.8552 3.1587 3.2826 42 1 11.6588 3.5225 4.5653 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417575853.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:17 Heat of formation + Delta-G solvation = -46.741060 kcal Electronic energy + Delta-G solvation = -28005.346307 eV Core-core repulsion = 23915.999935 eV Total energy + Delta-G solvation = -4089.346372 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.48232 -40.20081 -38.56365 -38.05760 -36.64878 -34.64667 -33.97528 -33.48601 -31.12445 -30.37840 -30.25202 -29.09954 -26.15315 -25.59354 -24.98885 -23.23950 -22.39830 -21.80274 -21.20997 -19.80348 -18.40354 -18.35091 -17.90892 -17.53075 -17.30416 -16.65991 -16.32994 -15.70972 -15.09229 -14.90150 -14.78328 -14.50147 -14.22594 -14.15277 -13.76670 -13.58283 -13.35314 -13.25157 -13.16209 -12.90646 -12.58307 -12.39488 -12.27013 -12.18695 -11.85898 -11.33161 -11.22089 -11.20467 -11.09355 -10.79488 -10.37915 -10.00740 -9.65826 -9.30817 -9.15851 -8.96653 -8.56444 -8.40136 -7.81984 -7.40117 -7.25665 -4.79005 0.82866 0.84775 2.19810 2.44942 2.63144 3.05632 3.12589 3.16594 3.35592 3.53890 3.64275 3.96565 4.09649 4.33282 4.37469 4.48943 4.58867 4.63745 4.71338 4.78689 4.86584 4.91540 5.02658 5.07159 5.17995 5.45058 5.52056 5.58914 5.68411 5.79878 5.85046 5.98191 6.00449 6.08698 6.12221 6.17598 6.44932 6.50828 6.55324 6.80924 7.12478 7.18182 7.42960 7.55992 7.59891 7.76049 8.10323 8.27240 8.44689 8.64315 9.39330 9.99209 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017613 B = 0.002467 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.339169 B =11347.280103 C =11951.212344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.042 3.958 3 Si 1.158 2.842 4 H -0.332 1.332 5 H -0.285 1.285 6 H -0.294 1.294 7 C -0.476 4.476 8 H 0.083 0.917 9 C 0.273 3.727 10 C -0.277 4.277 11 C -0.035 4.035 12 C -0.311 4.311 13 C 0.387 3.613 14 N -0.657 5.657 15 C 0.516 3.484 16 O -0.515 6.515 17 C -0.133 4.133 18 C -0.062 4.062 19 C -0.061 4.061 20 C -0.106 4.106 21 C -0.108 4.108 22 C -0.106 4.106 23 C 0.030 3.970 24 C 0.036 3.964 25 O -0.303 6.303 26 C 0.212 3.788 27 O -0.311 6.311 28 N -0.599 5.599 29 H 0.283 0.717 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.139 0.861 33 H 0.408 0.592 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.133 0.867 41 H 0.083 0.917 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.497 12.417 2.820 25.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.179 4.179 3 Si 0.994 3.006 4 H -0.266 1.266 5 H -0.213 1.213 6 H -0.222 1.222 7 C -0.508 4.508 8 H 0.101 0.899 9 C 0.149 3.851 10 C -0.299 4.299 11 C -0.059 4.059 12 C -0.336 4.336 13 C 0.157 3.843 14 N -0.302 5.302 15 C 0.303 3.697 16 O -0.390 6.390 17 C -0.173 4.173 18 C -0.100 4.100 19 C -0.061 4.061 20 C -0.124 4.124 21 C -0.126 4.126 22 C -0.125 4.125 23 C -0.014 4.014 24 C -0.009 4.009 25 O -0.219 6.219 26 C 0.101 3.899 27 O -0.227 6.227 28 N -0.325 5.325 29 H 0.094 0.906 30 H 0.123 0.877 31 H 0.124 0.876 32 H 0.157 0.843 33 H 0.244 0.756 34 H 0.117 0.883 35 H 0.116 0.884 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.158 0.842 39 H 0.156 0.844 40 H 0.151 0.849 41 H 0.101 0.899 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 22.119 13.998 2.832 26.329 hybrid contribution 0.285 -2.395 0.338 2.436 sum 22.404 11.603 3.169 25.429 Atomic orbital electron populations 1.70645 1.08148 1.32798 1.31238 1.27783 0.95345 1.06189 0.88534 0.81779 0.70551 0.69578 0.78721 1.26622 1.21292 1.22208 1.20725 0.90083 0.96298 1.43693 0.89854 1.18283 0.93485 0.85960 0.87377 1.21607 0.93883 0.98484 1.15921 1.20937 0.94100 0.96423 0.94473 1.21524 1.00933 0.91224 1.19901 1.18114 0.88685 0.84126 0.93418 1.43369 1.10954 1.13381 1.62464 1.20605 0.81284 0.89600 0.78222 1.90625 1.67084 1.41143 1.40102 1.21649 0.95639 0.96030 1.04002 1.20278 0.92583 0.93897 1.03211 1.18998 1.00277 0.97851 0.89012 1.20952 0.99714 0.92470 0.99277 1.20932 0.97924 0.97982 0.95738 1.20081 1.02822 0.98479 0.91108 1.19825 1.00098 0.96404 0.85054 1.19644 1.01710 0.90261 0.89259 1.87413 1.53911 1.51771 1.28773 1.25636 0.90895 0.76220 0.97193 1.87362 1.82838 1.27286 1.25243 1.65926 1.06783 1.29620 1.30182 0.90579 0.87662 0.87588 0.84335 0.75647 0.88329 0.88388 0.89646 0.89367 0.84205 0.84382 0.84869 0.89918 0.85097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.03 13.65 55.55 0.76 -21.27 16 2 C 0.04 1.16 5.52 -17.34 -0.10 1.06 16 3 Si 1.16 28.11 25.53 -169.99 -4.34 23.77 16 4 H -0.33 -7.97 7.11 56.52 0.40 -7.56 16 5 H -0.28 -6.65 6.70 56.52 0.38 -6.27 16 6 H -0.29 -7.22 7.10 56.52 0.40 -6.82 16 7 C -0.48 -13.05 9.58 -37.73 -0.36 -13.42 16 8 H 0.08 2.28 8.05 -52.49 -0.42 1.85 16 9 C 0.27 7.25 6.39 -84.99 -0.54 6.70 16 10 C -0.28 -6.66 9.83 -38.66 -0.38 -7.04 16 11 C -0.04 -0.78 10.15 -39.39 -0.40 -1.18 16 12 C -0.31 -7.06 8.83 -38.89 -0.34 -7.40 16 13 C 0.39 8.95 7.51 -154.98 -1.16 7.78 16 14 N -0.66 -12.17 5.41 -11.40 -0.06 -12.23 16 15 C 0.52 8.39 7.67 -10.98 -0.08 8.30 16 16 O -0.51 -9.84 12.78 5.56 0.07 -9.77 16 17 C -0.13 -1.51 5.68 -27.88 -0.16 -1.67 16 18 C -0.06 -0.67 4.63 -27.88 -0.13 -0.80 16 19 C -0.06 -0.60 5.14 -104.51 -0.54 -1.14 16 20 C -0.11 -0.84 9.67 -39.58 -0.38 -1.22 16 21 C -0.11 -0.75 10.04 -39.57 -0.40 -1.14 16 22 C -0.11 -0.86 10.06 -39.47 -0.40 -1.26 16 23 C 0.03 0.31 7.15 -39.09 -0.28 0.03 16 24 C 0.04 0.39 6.83 -39.08 -0.27 0.12 16 25 O -0.30 -3.32 11.39 -45.67 -0.52 -3.84 16 26 C 0.21 1.64 8.89 101.05 0.90 2.53 16 27 O -0.31 -3.11 11.40 -45.69 -0.52 -3.63 16 28 N -0.60 -15.31 4.59 -10.26 -0.05 -15.36 16 29 H 0.28 7.39 8.72 -40.82 -0.36 7.04 16 30 H 0.11 2.36 8.06 -52.48 -0.42 1.94 16 31 H 0.11 1.99 8.06 -52.49 -0.42 1.57 16 32 H 0.14 3.06 5.33 -52.50 -0.28 2.78 16 33 H 0.41 6.63 8.83 -40.82 -0.36 6.27 16 34 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.08 1.04 8.08 -51.93 -0.42 0.62 16 37 H 0.09 0.93 8.01 -51.93 -0.42 0.51 16 38 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 39 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 40 H 0.13 0.82 8.06 -52.48 -0.42 0.39 16 41 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.13 0.65 8.14 -51.92 -0.42 0.22 16 LS Contribution 359.12 15.07 5.41 5.41 Total: -1.00 -33.22 359.12 -9.15 -42.37 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -4.88 Total: 4.28 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -5.02 Total: -9.73 kcal Atomic # 7 Polarization: -49.51 SS G_CDS: 0.65 Total: -48.86 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: -0.97 Total: -17.24 kcal Atomic # 14 Polarization: 28.11 SS G_CDS: -4.34 Total: 23.77 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.22 -9.15 -42.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417575853.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.375 kcal (2) G-P(sol) polarization free energy of solvation -33.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds