Wall clock time and date at job start Sat Apr 11 2020 05:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30751 * 1 3 3 Si 1.86793 * 119.99915 * 2 1 4 4 H 1.48502 * 109.47523 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.46879 * 120.00284 * 3 2 1 6 6 H 1.48503 * 109.47121 * 239.99897 * 3 2 1 7 7 C 1.40024 * 119.99454 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00934 * 1.90632 * 7 2 1 9 9 C 1.41346 * 119.99563 * 181.90894 * 7 2 1 10 10 C 1.40610 * 119.78713 * 187.00324 * 9 7 2 11 11 C 1.38308 * 119.13069 * 179.76895 * 10 9 7 12 12 C 1.38699 * 118.66233 * 0.49463 * 11 10 9 13 13 C 1.39629 * 119.49825 * 359.74596 * 12 11 10 14 14 N 1.39272 * 119.57314 * 179.97438 * 13 12 11 15 15 C 1.34782 * 119.99903 * 18.88745 * 14 13 12 16 16 O 1.21272 * 119.99747 * 5.60432 * 15 14 13 17 17 C 1.50697 * 119.99770 * 185.60334 * 15 14 13 18 18 C 1.53004 * 109.46847 * 180.02562 * 17 15 14 19 19 C 1.50701 * 109.47197 * 179.97438 * 18 17 15 20 20 C 1.38280 * 119.98655 * 264.72466 * 19 18 17 21 21 C 1.38213 * 120.14217 * 179.67589 * 20 19 18 22 22 C 1.38282 * 120.14127 * 0.65354 * 21 20 19 23 23 C 1.38494 * 120.03075 * 359.63208 * 22 21 20 24 24 C 1.38505 * 119.98271 * 84.99580 * 19 18 17 25 25 O 1.36493 * 131.54673 * 0.02909 * 24 19 18 26 26 C 1.43983 * 105.49199 * 162.67496 * 25 24 19 27 27 O 1.36501 * 131.54062 * 180.02562 * 23 22 21 28 28 N 1.31923 * 120.85423 * 0.02562 * 13 12 11 29 29 H 0.96998 * 119.99961 * 174.82634 * 1 2 3 30 30 H 1.08005 * 120.43766 * 359.97438 * 10 9 7 31 31 H 1.08002 * 120.66880 * 180.22146 * 11 10 9 32 32 H 1.08004 * 120.24720 * 179.77102 * 12 11 10 33 33 H 0.96997 * 120.00116 * 198.88838 * 14 13 12 34 34 H 1.09003 * 109.47399 * 299.99765 * 17 15 14 35 35 H 1.08999 * 109.47436 * 60.00523 * 17 15 14 36 36 H 1.08997 * 109.46890 * 299.99547 * 18 17 15 37 37 H 1.08994 * 109.47490 * 59.99845 * 18 17 15 38 38 H 1.08000 * 119.92916 * 0.02562 * 20 19 18 39 39 H 1.07996 * 119.92825 * 180.28027 * 21 20 19 40 40 H 1.08004 * 119.98082 * 179.65210 * 22 21 20 41 41 H 1.08998 * 110.57605 * 268.56304 * 26 25 24 42 42 H 1.09008 * 110.69621 * 145.75150 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 1.2765 2.7465 0.0006 5 1 3.0952 1.6963 1.2125 6 1 3.0952 1.6964 -1.2125 7 6 2.0075 -1.2127 -0.0005 8 1 1.4680 -2.1478 -0.0321 9 6 3.4204 -1.2131 0.0402 10 6 4.1232 -2.4218 -0.1090 11 6 5.5057 -2.4058 -0.0718 12 6 6.1520 -1.1941 0.1228 13 6 5.3976 -0.0283 0.2697 14 7 6.0449 1.1891 0.4656 15 6 7.3466 1.3202 0.1412 16 8 7.9273 0.4120 -0.4144 17 6 8.0801 2.5951 0.4689 18 6 9.5314 2.4841 -0.0028 19 6 10.2648 3.7593 0.3243 20 6 10.3829 4.7530 -0.6301 21 6 11.0491 5.9265 -0.3314 22 6 11.6121 6.1065 0.9187 23 6 11.5028 5.1133 1.8776 24 6 10.8251 3.9332 1.5789 25 8 10.8563 3.1227 2.6767 26 6 11.9070 3.6453 3.5109 27 8 11.9580 5.0414 3.1625 28 7 4.0796 -0.0654 0.2263 29 1 -0.4850 -0.8366 -0.0757 30 1 3.5905 -3.3501 -0.2542 31 1 6.0705 -3.3191 -0.1873 32 1 7.2306 -1.1526 0.1599 33 1 5.5591 1.9427 0.8355 34 1 7.5974 3.4321 -0.0358 35 1 8.0595 2.7596 1.5462 36 1 10.0143 1.6472 0.5015 37 1 9.5517 2.3199 -1.0801 38 1 9.9488 4.6140 -1.6092 39 1 11.1354 6.7021 -1.0780 40 1 12.1369 7.0223 1.1475 41 1 12.8552 3.1587 3.2826 42 1 11.6588 3.5225 4.5653 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417575853.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:17 Heat of formation + Delta-G solvation = -66.610145 kcal Electronic energy + Delta-G solvation = -28006.207895 eV Core-core repulsion = 23915.999935 eV Total energy + Delta-G solvation = -4090.207961 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.12401 -41.71184 -39.99346 -39.00550 -37.33624 -36.30847 -35.37285 -34.82920 -33.00828 -31.72459 -30.87213 -30.35850 -27.36403 -26.73912 -26.14844 -23.87216 -23.82238 -23.52282 -22.21202 -21.33255 -20.29407 -19.01265 -18.87001 -18.56198 -18.31048 -17.79511 -17.16064 -17.05983 -16.84359 -16.32023 -15.66911 -15.62796 -15.45083 -15.20640 -15.14244 -14.81853 -14.56143 -14.36281 -14.15220 -14.04034 -13.91409 -13.85513 -13.67497 -13.07030 -13.01304 -12.90854 -12.67496 -12.25534 -12.01127 -11.95310 -11.78319 -11.76927 -11.62358 -11.13142 -10.75700 -10.42342 -9.76822 -9.66367 -9.28417 -9.22008 -9.04636 -6.83708 0.20306 0.20448 0.49311 0.71724 1.55219 1.56182 1.71792 1.83911 1.88638 2.07643 2.44410 2.55533 2.63491 2.66540 3.34648 3.53410 3.62057 3.81581 3.91020 4.00357 4.06150 4.12642 4.21817 4.25143 4.31142 4.39444 4.41453 4.54303 4.58501 4.66311 4.68240 4.78997 4.82918 5.02309 5.16322 5.22054 5.34496 5.37319 5.41885 5.42665 5.51341 5.55379 5.70541 5.79792 5.92656 6.17067 6.28585 6.40319 6.63448 7.04758 7.48279 7.94035 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017613 B = 0.002467 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.339169 B =11347.280103 C =11951.212344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.013 3.987 3 Si 1.189 2.811 4 H -0.328 1.328 5 H -0.273 1.273 6 H -0.299 1.299 7 C -0.507 4.507 8 H 0.068 0.932 9 C 0.257 3.743 10 C -0.293 4.293 11 C -0.028 4.028 12 C -0.309 4.309 13 C 0.377 3.623 14 N -0.656 5.656 15 C 0.518 3.482 16 O -0.543 6.543 17 C -0.120 4.120 18 C -0.055 4.055 19 C -0.072 4.072 20 C -0.105 4.105 21 C -0.099 4.099 22 C -0.108 4.108 23 C 0.009 3.991 24 C 0.014 3.986 25 O -0.326 6.326 26 C 0.205 3.795 27 O -0.326 6.326 28 N -0.612 5.612 29 H 0.281 0.719 30 H 0.115 0.885 31 H 0.144 0.856 32 H 0.149 0.851 33 H 0.419 0.581 34 H 0.128 0.872 35 H 0.108 0.892 36 H 0.065 0.935 37 H 0.091 0.909 38 H 0.161 0.839 39 H 0.171 0.829 40 H 0.152 0.848 41 H 0.099 0.901 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.040 14.285 2.473 28.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.203 4.203 3 Si 1.022 2.978 4 H -0.262 1.262 5 H -0.200 1.200 6 H -0.228 1.228 7 C -0.540 4.540 8 H 0.087 0.913 9 C 0.132 3.868 10 C -0.315 4.315 11 C -0.052 4.052 12 C -0.333 4.333 13 C 0.145 3.855 14 N -0.303 5.303 15 C 0.308 3.692 16 O -0.419 6.419 17 C -0.159 4.159 18 C -0.093 4.093 19 C -0.073 4.073 20 C -0.123 4.123 21 C -0.117 4.117 22 C -0.127 4.127 23 C -0.035 4.035 24 C -0.030 4.030 25 O -0.243 6.243 26 C 0.094 3.906 27 O -0.243 6.243 28 N -0.339 5.339 29 H 0.091 0.909 30 H 0.133 0.867 31 H 0.162 0.838 32 H 0.167 0.833 33 H 0.257 0.743 34 H 0.146 0.854 35 H 0.127 0.873 36 H 0.084 0.916 37 H 0.109 0.891 38 H 0.179 0.821 39 H 0.188 0.812 40 H 0.169 0.831 41 H 0.117 0.883 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 24.685 15.883 2.503 29.460 hybrid contribution -0.241 -3.014 0.430 3.054 sum 24.444 12.869 2.933 27.780 Atomic orbital electron populations 1.70667 1.08424 1.32691 1.33420 1.28592 0.95631 1.08027 0.88085 0.81386 0.69913 0.67692 0.78795 1.26191 1.20008 1.22791 1.20718 0.90962 0.95961 1.46350 0.91350 1.18474 0.93476 0.87359 0.87514 1.21770 0.94929 0.98184 1.16621 1.21349 0.93493 0.97848 0.92497 1.21881 1.01544 0.91445 1.18412 1.18501 0.88180 0.86176 0.92598 1.43516 1.11743 1.12328 1.62674 1.21505 0.80240 0.90750 0.76724 1.90596 1.67348 1.42671 1.41296 1.21682 0.95401 0.93887 1.04975 1.20166 0.92067 0.94021 1.03033 1.19021 1.00980 0.97950 0.89341 1.21268 0.99271 0.92133 0.99601 1.21330 0.96322 0.98255 0.95789 1.20483 1.02461 0.98614 0.91119 1.20161 1.00852 0.96993 0.85514 1.19898 1.02713 0.90761 0.89653 1.87358 1.55078 1.52491 1.29347 1.26015 0.91134 0.75431 0.98049 1.87321 1.83047 1.28453 1.25462 1.65929 1.07999 1.29437 1.30487 0.90853 0.86711 0.83842 0.83338 0.74334 0.85389 0.87333 0.91626 0.89075 0.82109 0.81157 0.83076 0.88328 0.82779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.35 13.65 21.84 0.30 -46.05 16 2 C 0.01 0.72 5.52 85.29 0.47 1.19 16 3 Si 1.19 56.84 25.53 68.60 1.75 58.59 16 4 H -0.33 -15.28 7.11 99.48 0.71 -14.58 16 5 H -0.27 -12.30 6.70 99.48 0.67 -11.64 16 6 H -0.30 -14.42 7.10 99.48 0.71 -13.71 16 7 C -0.51 -28.56 9.58 23.47 0.22 -28.34 16 8 H 0.07 3.91 8.05 -2.91 -0.02 3.88 16 9 C 0.26 13.68 6.39 40.21 0.26 13.94 16 10 C -0.29 -13.92 9.83 22.87 0.22 -13.70 16 11 C -0.03 -1.17 10.15 22.40 0.23 -0.94 16 12 C -0.31 -13.40 8.83 22.72 0.20 -13.20 16 13 C 0.38 16.83 7.51 133.23 1.00 17.83 16 14 N -0.66 -22.97 5.41 -308.38 -1.67 -24.64 16 15 C 0.52 15.71 7.67 87.66 0.67 16.38 16 16 O -0.54 -19.78 12.78 -3.01 -0.04 -19.82 16 17 C -0.12 -2.40 5.68 29.85 0.17 -2.23 16 18 C -0.06 -1.09 4.63 29.85 0.14 -0.95 16 19 C -0.07 -1.28 5.14 -19.79 -0.10 -1.38 16 20 C -0.10 -1.32 9.67 22.27 0.22 -1.10 16 21 C -0.10 -1.02 10.04 22.27 0.22 -0.80 16 22 C -0.11 -1.48 10.06 22.34 0.22 -1.25 16 23 C 0.01 0.17 7.15 22.59 0.16 0.33 16 24 C 0.01 0.29 6.83 22.59 0.15 0.44 16 25 O -0.33 -6.94 11.39 -75.97 -0.87 -7.81 16 26 C 0.20 2.97 8.89 113.37 1.01 3.98 16 27 O -0.33 -6.23 11.40 -76.06 -0.87 -7.10 16 28 N -0.61 -30.82 4.59 -186.36 -0.85 -31.67 16 29 H 0.28 15.21 8.72 -92.71 -0.81 14.40 16 30 H 0.11 5.11 8.06 -2.91 -0.02 5.09 16 31 H 0.14 4.91 8.06 -2.91 -0.02 4.88 16 32 H 0.15 6.22 5.33 -3.16 -0.02 6.21 16 33 H 0.42 12.64 8.83 -92.71 -0.82 11.82 16 34 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.07 1.55 8.08 -2.39 -0.02 1.53 16 37 H 0.09 1.72 8.01 -2.39 -0.02 1.70 16 38 H 0.16 1.29 8.06 -2.91 -0.02 1.27 16 39 H 0.17 0.62 8.06 -2.91 -0.02 0.60 16 40 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 41 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.15 1.34 8.14 -2.38 -0.02 1.32 16 Total: -1.00 -72.62 359.12 3.41 -69.22 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: 0.18 Total: 19.09 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: 5.47 Total: -9.81 kcal Atomic # 7 Polarization: -100.13 SS G_CDS: -2.23 Total: -102.36 kcal Atomic # 8 Polarization: -32.95 SS G_CDS: -1.77 Total: -34.72 kcal Atomic # 14 Polarization: 56.84 SS G_CDS: 1.75 Total: 58.59 kcal Total: -72.62 3.41 -69.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417575853.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.606 kcal (2) G-P(sol) polarization free energy of solvation -72.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds