Wall clock time and date at job start Sat Apr 11 2020 05:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38577 * 119.82770 * 2 1 4 4 C 1.38009 * 120.40439 * 179.76339 * 3 2 1 5 5 C 1.38882 * 120.06798 * 0.51077 * 4 3 2 6 6 N 1.39191 * 120.16265 * 179.76468 * 5 4 3 7 7 C 1.34778 * 120.00281 * 25.23026 * 6 5 4 8 8 O 1.21590 * 119.99758 * 5.61706 * 7 6 5 9 9 C 1.47483 * 119.99726 * 185.61848 * 7 6 5 10 10 C 1.39687 * 120.20517 * 359.97438 * 9 7 6 11 11 C 1.37821 * 119.91990 * 180.23039 * 10 9 7 12 12 C 1.38574 * 120.32293 * 359.47141 * 11 10 9 13 13 C 1.38025 * 120.40980 * 0.55399 * 12 11 10 14 14 C 1.38835 * 120.07196 * 359.70209 * 13 12 11 15 15 O 1.35520 * 120.16078 * 180.02562 * 14 13 12 16 16 C 1.34813 * 117.00239 * 354.82375 * 15 14 13 17 17 H 1.08004 * 119.99606 * 5.02438 * 16 15 14 18 18 C 1.38699 * 119.99969 * 185.01807 * 16 15 14 19 19 N 1.31517 * 120.00289 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99615 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47535 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.46853 * 120.00629 * 20 18 16 23 23 H 1.48504 * 109.46837 * 240.00158 * 20 18 16 24 24 C 1.40281 * 119.66479 * 359.49213 * 5 4 3 25 25 C 1.47510 * 120.20258 * 180.27700 * 24 5 4 26 26 N 1.34773 * 120.00448 * 185.29799 * 25 24 5 27 27 O 1.21597 * 119.99447 * 5.29448 * 25 24 5 28 28 C 1.37788 * 119.83413 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.46997 * 269.97886 * 1 2 3 30 30 H 1.08996 * 109.47336 * 29.98135 * 1 2 3 31 31 H 1.09004 * 109.46504 * 149.98358 * 1 2 3 32 32 H 1.07995 * 119.79636 * 0.04163 * 3 2 1 33 33 H 1.08002 * 119.96644 * 180.27452 * 4 3 2 34 34 H 0.97000 * 119.99568 * 205.22293 * 6 5 4 35 35 H 1.07999 * 120.03631 * 359.95917 * 10 9 7 36 36 H 1.07993 * 119.83393 * 179.74842 * 11 10 9 37 37 H 1.08007 * 119.79408 * 180.27742 * 12 11 10 38 38 H 1.08000 * 119.96750 * 179.72173 * 13 12 11 39 39 H 0.96993 * 120.00210 * 179.97438 * 19 18 16 40 40 H 0.97007 * 119.99643 * 359.97438 * 26 25 24 41 41 H 0.96998 * 120.00082 * 180.02562 * 26 25 24 42 42 H 1.08006 * 120.04189 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1963 1.2022 0.0000 4 6 3.5764 1.2161 0.0049 5 6 4.2843 0.0212 -0.0008 6 7 5.6761 0.0330 -0.0008 7 6 6.3412 1.0921 0.5017 8 8 5.7300 1.9907 1.0471 9 6 7.8102 1.1610 0.3901 10 6 8.5165 0.1307 -0.2351 11 6 9.8896 0.1989 -0.3319 12 6 10.5737 1.2905 0.1786 13 6 9.8894 2.3159 0.7994 14 6 8.5065 2.2620 0.9109 15 8 7.8328 3.2679 1.5197 16 6 8.5706 4.2410 2.0909 17 1 9.6450 4.2391 1.9808 18 6 7.9498 5.2445 2.8199 19 7 6.6415 5.2465 2.9543 20 14 8.9722 6.5931 3.6108 21 1 10.4089 6.3641 3.3135 22 1 8.5577 7.9115 3.0675 23 1 8.7625 6.5754 5.0809 24 6 3.5895 -1.1974 -0.0008 25 6 4.3295 -2.4735 -0.0007 26 7 3.6622 -3.6395 -0.1084 27 8 5.5415 -2.4733 0.0966 28 6 2.1925 -1.1953 -0.0005 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3634 0.8901 -0.5135 31 1 -0.3632 -0.8899 -0.5141 32 1 1.6502 2.1339 0.0007 33 1 4.1064 2.1571 0.0094 34 1 6.1675 -0.7212 -0.3624 35 1 7.9876 -0.7203 -0.6382 36 1 10.4347 -0.6004 -0.8119 37 1 11.6494 1.3372 0.0940 38 1 10.4301 3.1612 1.1987 39 1 6.2075 5.9481 3.4644 40 1 2.6952 -3.6396 -0.1857 41 1 4.1488 -4.4786 -0.1080 42 1 1.6505 -2.1295 -0.0014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433511269.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:19 Heat of formation + Delta-G solvation = -36.325992 kcal Electronic energy + Delta-G solvation = -28842.079928 eV Core-core repulsion = 24753.185187 eV Total energy + Delta-G solvation = -4088.894741 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.75592 -39.47011 -38.54067 -37.79478 -36.35481 -34.69653 -33.82387 -32.35887 -31.75921 -30.85822 -30.16835 -28.92090 -26.44045 -25.36925 -24.19464 -23.27543 -22.09313 -21.35068 -20.42551 -19.83628 -18.21373 -17.87827 -17.52504 -16.87809 -16.73437 -16.23925 -15.19691 -14.87797 -14.70258 -14.60770 -14.55072 -14.23453 -14.11726 -13.97306 -13.69120 -13.67065 -13.45099 -13.14904 -12.74244 -12.53843 -12.27406 -12.05825 -11.93548 -11.72597 -11.39780 -11.31569 -11.07621 -10.91748 -10.76654 -10.44916 -10.20199 -9.90072 -9.84775 -9.55737 -9.00619 -8.89352 -8.76284 -8.29208 -7.68470 -7.30728 -6.46454 -4.05744 0.88151 1.38982 1.77212 2.33671 2.84628 3.11232 3.12497 3.17964 3.38161 3.54650 3.57385 3.92376 4.01659 4.62925 4.68516 4.73150 4.94275 5.05502 5.17669 5.20437 5.26592 5.39838 5.53036 5.54134 5.57724 5.70955 5.78674 5.83826 5.94988 6.11005 6.13902 6.27603 6.37755 6.58199 6.60652 6.63756 6.69204 6.78319 6.92538 7.07971 7.13101 7.22545 7.25483 7.30254 7.69626 7.89677 7.99710 8.16266 8.88891 8.94691 9.64908 10.67427 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011539 B = 0.003642 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.050176 B = 7687.263721 C = 9815.054669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.133 4.133 3 C -0.063 4.063 4 C -0.141 4.141 5 C 0.235 3.765 6 N -0.667 5.667 7 C 0.552 3.448 8 O -0.481 6.481 9 C -0.231 4.231 10 C -0.032 4.032 11 C -0.229 4.229 12 C -0.047 4.047 13 C -0.238 4.238 14 C 0.193 3.807 15 O -0.124 6.124 16 C -0.403 4.403 17 H 0.095 0.905 18 C 0.045 3.955 19 N -0.832 5.832 20 Si 0.941 3.059 21 H -0.265 1.265 22 H -0.275 1.275 23 H -0.275 1.275 24 C -0.198 4.198 25 C 0.573 3.427 26 N -0.852 5.852 27 O -0.545 6.545 28 C -0.064 4.064 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.129 0.871 33 H 0.159 0.841 34 H 0.419 0.581 35 H 0.115 0.885 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.133 0.867 39 H 0.271 0.729 40 H 0.400 0.600 41 H 0.403 0.597 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.617 -13.796 -7.638 17.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.134 4.134 3 C -0.082 4.082 4 C -0.162 4.162 5 C 0.134 3.866 6 N -0.317 5.317 7 C 0.344 3.656 8 O -0.354 6.354 9 C -0.235 4.235 10 C -0.051 4.051 11 C -0.248 4.248 12 C -0.066 4.066 13 C -0.257 4.257 14 C 0.133 3.867 15 O -0.022 6.022 16 C -0.478 4.478 17 H 0.113 0.887 18 C -0.163 4.163 19 N -0.463 5.463 20 Si 0.765 3.235 21 H -0.189 1.189 22 H -0.200 1.200 23 H -0.200 1.200 24 C -0.205 4.205 25 C 0.361 3.639 26 N -0.415 5.415 27 O -0.424 6.424 28 C -0.084 4.084 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.147 0.853 33 H 0.176 0.824 34 H 0.263 0.737 35 H 0.133 0.867 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.151 0.849 39 H 0.081 0.919 40 H 0.230 0.770 41 H 0.234 0.766 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.603 -12.715 -7.009 16.876 hybrid contribution 0.547 -0.208 0.244 0.634 sum -8.055 -12.923 -6.764 16.663 Atomic orbital electron populations 1.20701 0.91013 1.02465 1.02136 1.19693 0.96103 0.92851 1.04753 1.21175 0.93720 0.97657 0.95657 1.21653 0.94149 0.98789 1.01591 1.17810 0.83785 0.92477 0.92529 1.44039 1.03926 1.23054 1.60682 1.18466 0.87971 0.81187 0.78008 1.90893 1.68434 1.36656 1.39454 1.18656 0.91270 0.98277 1.15347 1.20858 0.94370 0.95323 0.94531 1.20480 0.93830 1.00570 1.09883 1.20929 0.98719 0.92826 0.94134 1.21152 0.93810 1.02154 1.08582 1.19225 0.90159 0.87196 0.90147 1.84152 1.33807 1.26936 1.57338 1.21560 0.91718 1.02923 1.31643 0.88750 1.25384 0.96172 0.98284 0.96443 1.70126 1.08139 1.32132 1.35929 0.85656 0.79286 0.79621 0.78906 1.18949 1.19996 1.20007 1.19428 0.93842 0.91591 1.15624 1.18169 0.86832 0.84115 0.74809 1.43679 1.11639 1.08336 1.77861 1.90646 1.14016 1.87136 1.50606 1.20773 0.91669 0.97700 0.98221 0.91469 0.91600 0.91930 0.85349 0.82358 0.73667 0.86689 0.87084 0.87040 0.84933 0.91892 0.77033 0.76589 0.85916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.00 36.01 0.36 -0.50 16 2 C -0.13 -1.53 5.87 -104.66 -0.61 -2.15 16 3 C -0.06 -0.88 9.68 -39.54 -0.38 -1.27 16 4 C -0.14 -2.51 8.70 -39.43 -0.34 -2.86 16 5 C 0.24 4.17 6.43 -83.51 -0.54 3.63 16 6 N -0.67 -12.92 4.79 -10.64 -0.05 -12.97 16 7 C 0.55 12.84 7.56 -12.49 -0.09 12.74 16 8 O -0.48 -12.99 12.34 -16.57 -0.20 -13.20 16 9 C -0.23 -5.28 5.89 -104.82 -0.62 -5.90 16 10 C -0.03 -0.61 9.53 -39.19 -0.37 -0.98 16 11 C -0.23 -4.01 10.02 -39.61 -0.40 -4.40 16 12 C -0.05 -0.87 10.03 -39.54 -0.40 -1.26 16 13 C -0.24 -5.20 9.16 -39.44 -0.36 -5.56 16 14 C 0.19 4.86 6.66 -38.59 -0.26 4.60 16 15 O -0.12 -3.66 7.84 -21.05 -0.16 -3.83 16 16 C -0.40 -11.37 9.49 30.90 0.29 -11.08 16 17 H 0.10 2.43 5.20 -52.48 -0.27 2.15 16 18 C 0.05 1.25 5.49 -17.52 -0.10 1.15 16 19 N -0.83 -24.84 13.67 55.48 0.76 -24.08 16 20 Si 0.94 20.49 29.55 -169.99 -5.02 15.47 16 21 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 22 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 23 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 24 C -0.20 -2.83 5.89 -104.81 -0.62 -3.45 16 25 C 0.57 7.68 8.02 -12.48 -0.10 7.58 16 26 N -0.85 -6.90 8.82 30.45 0.27 -6.63 16 27 O -0.55 -9.13 14.65 5.28 0.08 -9.05 16 28 C -0.06 -0.71 9.16 -39.20 -0.36 -1.07 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 31 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 32 H 0.13 1.55 8.06 -52.49 -0.42 1.12 16 33 H 0.16 3.30 5.81 -52.49 -0.30 3.00 16 34 H 0.42 7.53 4.07 -40.82 -0.17 7.37 16 35 H 0.12 1.91 6.42 -52.49 -0.34 1.57 16 36 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 37 H 0.11 1.65 8.06 -52.48 -0.42 1.23 16 38 H 0.13 2.83 5.63 -52.49 -0.30 2.54 16 39 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.40 2.06 6.89 -40.82 -0.28 1.78 16 41 H 0.40 2.65 8.93 -40.82 -0.36 2.29 16 42 H 0.12 0.86 6.44 -52.48 -0.34 0.52 16 LS Contribution 356.75 15.07 5.38 5.38 Total: -1.00 -35.91 356.75 -7.88 -43.79 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: -4.03 Total: 15.89 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: -4.89 Total: -10.77 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: 0.98 Total: -43.68 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -0.29 Total: -26.07 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.91 -7.88 -43.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433511269.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.465 kcal (2) G-P(sol) polarization free energy of solvation -35.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds