Wall clock time and date at job start Sat Apr 11 2020 05:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38577 * 119.82770 * 2 1 4 4 C 1.38009 * 120.40439 * 179.76339 * 3 2 1 5 5 C 1.38882 * 120.06798 * 0.51077 * 4 3 2 6 6 N 1.39191 * 120.16265 * 179.76468 * 5 4 3 7 7 C 1.34778 * 120.00281 * 25.23026 * 6 5 4 8 8 O 1.21590 * 119.99758 * 5.61706 * 7 6 5 9 9 C 1.47483 * 119.99726 * 185.61848 * 7 6 5 10 10 C 1.39687 * 120.20517 * 359.97438 * 9 7 6 11 11 C 1.37821 * 119.91990 * 180.23039 * 10 9 7 12 12 C 1.38574 * 120.32293 * 359.47141 * 11 10 9 13 13 C 1.38025 * 120.40980 * 0.55399 * 12 11 10 14 14 C 1.38835 * 120.07196 * 359.70209 * 13 12 11 15 15 O 1.35520 * 120.16078 * 180.02562 * 14 13 12 16 16 C 1.34813 * 117.00239 * 354.82375 * 15 14 13 17 17 H 1.08004 * 119.99606 * 5.02438 * 16 15 14 18 18 C 1.38699 * 119.99969 * 185.01807 * 16 15 14 19 19 N 1.31517 * 120.00289 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99615 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47535 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.46853 * 120.00629 * 20 18 16 23 23 H 1.48504 * 109.46837 * 240.00158 * 20 18 16 24 24 C 1.40281 * 119.66479 * 359.49213 * 5 4 3 25 25 C 1.47510 * 120.20258 * 180.27700 * 24 5 4 26 26 N 1.34773 * 120.00448 * 185.29799 * 25 24 5 27 27 O 1.21597 * 119.99447 * 5.29448 * 25 24 5 28 28 C 1.37788 * 119.83413 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.46997 * 269.97886 * 1 2 3 30 30 H 1.08996 * 109.47336 * 29.98135 * 1 2 3 31 31 H 1.09004 * 109.46504 * 149.98358 * 1 2 3 32 32 H 1.07995 * 119.79636 * 0.04163 * 3 2 1 33 33 H 1.08002 * 119.96644 * 180.27452 * 4 3 2 34 34 H 0.97000 * 119.99568 * 205.22293 * 6 5 4 35 35 H 1.07999 * 120.03631 * 359.95917 * 10 9 7 36 36 H 1.07993 * 119.83393 * 179.74842 * 11 10 9 37 37 H 1.08007 * 119.79408 * 180.27742 * 12 11 10 38 38 H 1.08000 * 119.96750 * 179.72173 * 13 12 11 39 39 H 0.96993 * 120.00210 * 179.97438 * 19 18 16 40 40 H 0.97007 * 119.99643 * 359.97438 * 26 25 24 41 41 H 0.96998 * 120.00082 * 180.02562 * 26 25 24 42 42 H 1.08006 * 120.04189 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1963 1.2022 0.0000 4 6 3.5764 1.2161 0.0049 5 6 4.2843 0.0212 -0.0008 6 7 5.6761 0.0330 -0.0008 7 6 6.3412 1.0921 0.5017 8 8 5.7300 1.9907 1.0471 9 6 7.8102 1.1610 0.3901 10 6 8.5165 0.1307 -0.2351 11 6 9.8896 0.1989 -0.3319 12 6 10.5737 1.2905 0.1786 13 6 9.8894 2.3159 0.7994 14 6 8.5065 2.2620 0.9109 15 8 7.8328 3.2679 1.5197 16 6 8.5706 4.2410 2.0909 17 1 9.6450 4.2391 1.9808 18 6 7.9498 5.2445 2.8199 19 7 6.6415 5.2465 2.9543 20 14 8.9722 6.5931 3.6108 21 1 10.4089 6.3641 3.3135 22 1 8.5577 7.9115 3.0675 23 1 8.7625 6.5754 5.0809 24 6 3.5895 -1.1974 -0.0008 25 6 4.3295 -2.4735 -0.0007 26 7 3.6622 -3.6395 -0.1084 27 8 5.5415 -2.4733 0.0966 28 6 2.1925 -1.1953 -0.0005 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3634 0.8901 -0.5135 31 1 -0.3632 -0.8899 -0.5141 32 1 1.6502 2.1339 0.0007 33 1 4.1064 2.1571 0.0094 34 1 6.1675 -0.7212 -0.3624 35 1 7.9876 -0.7203 -0.6382 36 1 10.4347 -0.6004 -0.8119 37 1 11.6494 1.3372 0.0940 38 1 10.4301 3.1612 1.1987 39 1 6.2075 5.9481 3.4644 40 1 2.6952 -3.6396 -0.1857 41 1 4.1488 -4.4786 -0.1080 42 1 1.6505 -2.1295 -0.0014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433511269.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:19 Heat of formation + Delta-G solvation = -63.013866 kcal Electronic energy + Delta-G solvation = -28843.237201 eV Core-core repulsion = 24753.185187 eV Total energy + Delta-G solvation = -4090.052014 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.10986 -41.02206 -39.98679 -39.13268 -38.10488 -36.14613 -34.83183 -34.35873 -33.09270 -31.95261 -31.59983 -30.64071 -27.66650 -27.19548 -25.32568 -24.78071 -23.53471 -22.90293 -21.51895 -21.38422 -19.94080 -19.46085 -18.79277 -18.06494 -17.97676 -17.79631 -16.61556 -16.45463 -16.21300 -16.09203 -15.81398 -15.79666 -15.59625 -15.38069 -15.12304 -15.11922 -14.49639 -14.44658 -14.33246 -14.27777 -13.57879 -13.29651 -13.07351 -13.04183 -12.88913 -12.73346 -12.58807 -12.43444 -12.33545 -12.10457 -11.46303 -11.41302 -11.08868 -10.86835 -10.77033 -10.59215 -10.02591 -9.94132 -9.14943 -8.92037 -8.47270 -6.18287 -0.31329 0.00094 0.38162 0.66163 1.31835 1.42456 1.51916 1.75635 1.93187 2.10096 2.14146 2.47690 2.76574 2.87424 3.16330 3.38107 3.70031 3.79158 3.81163 3.97977 3.99759 4.21500 4.27034 4.34543 4.44630 4.46508 4.59262 4.72162 4.89810 4.92961 4.95522 5.00165 5.07191 5.07583 5.18406 5.29881 5.42728 5.52514 5.54823 5.58847 5.62662 5.83626 5.93245 5.95766 6.09376 6.34891 6.51748 6.91578 7.18518 7.29480 7.74626 8.73174 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011539 B = 0.003642 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.050176 B = 7687.263721 C = 9815.054669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.118 4.118 3 C -0.071 4.071 4 C -0.172 4.172 5 C 0.189 3.811 6 N -0.655 5.655 7 C 0.543 3.457 8 O -0.535 6.535 9 C -0.250 4.250 10 C -0.032 4.032 11 C -0.200 4.200 12 C -0.033 4.033 13 C -0.254 4.254 14 C 0.157 3.843 15 O -0.185 6.185 16 C -0.429 4.429 17 H 0.109 0.891 18 C -0.020 4.020 19 N -0.902 5.902 20 Si 1.023 2.977 21 H -0.245 1.245 22 H -0.267 1.267 23 H -0.269 1.269 24 C -0.194 4.194 25 C 0.569 3.431 26 N -0.819 5.819 27 O -0.584 6.584 28 C -0.049 4.049 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.094 0.906 32 H 0.140 0.860 33 H 0.110 0.890 34 H 0.424 0.576 35 H 0.142 0.858 36 H 0.164 0.836 37 H 0.161 0.839 38 H 0.131 0.869 39 H 0.271 0.729 40 H 0.419 0.581 41 H 0.416 0.584 42 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.544 -17.915 -9.069 21.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.119 4.119 3 C -0.089 4.089 4 C -0.193 4.193 5 C 0.090 3.910 6 N -0.306 5.306 7 C 0.336 3.664 8 O -0.413 6.413 9 C -0.255 4.255 10 C -0.050 4.050 11 C -0.218 4.218 12 C -0.051 4.051 13 C -0.273 4.273 14 C 0.101 3.899 15 O -0.087 6.087 16 C -0.505 4.505 17 H 0.126 0.874 18 C -0.220 4.220 19 N -0.538 5.538 20 Si 0.842 3.158 21 H -0.168 1.168 22 H -0.192 1.192 23 H -0.194 1.194 24 C -0.200 4.200 25 C 0.356 3.644 26 N -0.383 5.383 27 O -0.466 6.466 28 C -0.067 4.067 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.113 0.887 32 H 0.157 0.843 33 H 0.128 0.872 34 H 0.270 0.730 35 H 0.159 0.841 36 H 0.181 0.819 37 H 0.179 0.821 38 H 0.148 0.852 39 H 0.081 0.919 40 H 0.252 0.748 41 H 0.249 0.751 42 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -8.560 -16.962 -8.505 20.816 hybrid contribution 0.446 0.618 0.436 0.878 sum -8.114 -16.344 -8.069 19.952 Atomic orbital electron populations 1.20815 0.87550 1.04447 1.03357 1.20182 0.98361 0.91682 1.01658 1.21394 0.92181 0.99883 0.95491 1.21383 0.95918 0.97358 1.04614 1.18110 0.83038 0.94002 0.95858 1.43747 1.04926 1.21761 1.60136 1.18759 0.88532 0.81475 0.77670 1.90880 1.69480 1.38812 1.42096 1.19112 0.91597 0.99002 1.15781 1.21225 0.95508 0.94734 0.93581 1.21147 0.93054 1.00863 1.06735 1.21475 1.01068 0.91108 0.91412 1.21334 0.92482 1.03711 1.09771 1.19950 0.92099 0.87447 0.90390 1.84164 1.35317 1.28835 1.60432 1.22125 0.92554 1.03485 1.32298 0.87350 1.26777 0.97461 1.00952 0.96787 1.70320 1.10690 1.34013 1.38758 0.84486 0.78132 0.75642 0.77569 1.16775 1.19229 1.19431 1.19697 0.95276 0.90784 1.14276 1.18102 0.86360 0.84975 0.74969 1.43383 1.12617 1.07102 1.75240 1.90615 1.15700 1.87628 1.52685 1.21372 0.90256 0.99836 0.95253 0.90414 0.90993 0.88741 0.84266 0.87194 0.72999 0.84066 0.81891 0.82150 0.85172 0.91945 0.74825 0.75097 0.80395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 10.00 71.24 0.71 -0.54 16 2 C -0.12 -2.45 5.87 -19.89 -0.12 -2.56 16 3 C -0.07 -2.07 9.68 22.30 0.22 -1.85 16 4 C -0.17 -6.81 8.70 22.37 0.19 -6.61 16 5 C 0.19 7.13 6.43 38.62 0.25 7.38 16 6 N -0.65 -27.23 4.79 -305.85 -1.46 -28.69 16 7 C 0.54 27.85 7.56 86.68 0.66 28.50 16 8 O -0.54 -32.79 12.34 16.90 0.21 -32.58 16 9 C -0.25 -12.15 5.89 -19.99 -0.12 -12.27 16 10 C -0.03 -1.18 9.53 22.52 0.21 -0.97 16 11 C -0.20 -6.20 10.02 22.25 0.22 -5.98 16 12 C -0.03 -1.09 10.03 22.30 0.22 -0.86 16 13 C -0.25 -11.28 9.16 22.36 0.20 -11.08 16 14 C 0.16 8.48 6.66 22.91 0.15 8.63 16 15 O -0.19 -12.05 7.84 0.85 0.01 -12.04 16 16 C -0.43 -26.26 9.49 67.93 0.64 -25.61 16 17 H 0.11 5.94 5.20 -2.91 -0.02 5.92 16 18 C -0.02 -1.21 5.49 84.85 0.47 -0.74 16 19 N -0.90 -59.22 13.67 21.62 0.30 -58.92 16 20 Si 1.02 44.53 29.55 68.60 2.03 46.56 16 21 H -0.24 -9.63 7.11 99.48 0.71 -8.92 16 22 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 23 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 24 C -0.19 -5.34 5.89 -19.98 -0.12 -5.46 16 25 C 0.57 14.09 8.02 86.69 0.70 14.78 16 26 N -0.82 -9.91 8.82 -175.83 -1.55 -11.47 16 27 O -0.58 -19.03 14.65 -4.02 -0.06 -19.09 16 28 C -0.05 -0.91 9.16 22.52 0.21 -0.70 16 29 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.07 0.83 8.08 -2.39 -0.02 0.81 16 31 H 0.09 0.60 8.08 -2.39 -0.02 0.58 16 32 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 33 H 0.11 5.41 5.81 -2.91 -0.02 5.39 16 34 H 0.42 15.83 4.07 -92.71 -0.38 15.45 16 35 H 0.14 4.45 6.42 -2.91 -0.02 4.43 16 36 H 0.16 3.54 8.06 -2.91 -0.02 3.52 16 37 H 0.16 3.85 8.06 -2.91 -0.02 3.83 16 38 H 0.13 5.73 5.63 -2.91 -0.02 5.71 16 39 H 0.27 16.24 8.31 -92.71 -0.77 15.47 16 40 H 0.42 1.97 6.89 -92.70 -0.64 1.33 16 41 H 0.42 3.77 8.93 -92.71 -0.83 2.94 16 42 H 0.18 1.31 6.44 -2.91 -0.02 1.29 16 Total: -1.00 -94.48 356.75 3.46 -91.02 By element: Atomic # 1 Polarization: 41.87 SS G_CDS: -0.71 Total: 41.16 kcal Atomic # 6 Polarization: -20.65 SS G_CDS: 4.70 Total: -15.94 kcal Atomic # 7 Polarization: -96.36 SS G_CDS: -2.72 Total: -99.08 kcal Atomic # 8 Polarization: -63.87 SS G_CDS: 0.16 Total: -63.72 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -94.48 3.46 -91.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433511269.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.009 kcal (2) G-P(sol) polarization free energy of solvation -94.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds