Wall clock time and date at job start Sat Apr 11 2020 05:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99523 * 2 1 4 4 H 1.48503 * 109.46711 * 239.99857 * 3 2 1 5 5 H 1.48499 * 109.47202 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47021 * 120.00311 * 3 2 1 7 7 C 1.37873 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00100 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00188 * 0.02562 * 7 2 1 10 10 O 1.42904 * 113.28252 * 313.06506 * 9 7 2 11 11 C 1.53498 * 114.21005 * 179.97438 * 9 7 2 12 12 N 1.47065 * 87.98781 * 220.14627 * 11 9 7 13 13 C 1.34777 * 136.05910 * 207.08854 * 12 11 9 14 14 O 1.21670 * 119.99810 * 359.97438 * 13 12 11 15 15 C 1.46830 * 119.99820 * 180.02562 * 13 12 11 16 16 C 1.36312 * 125.82843 * 180.34427 * 15 13 12 17 17 C 1.41376 * 107.01116 * 180.15296 * 16 15 13 18 18 C 1.47288 * 126.47878 * 179.83725 * 17 16 15 19 19 O 1.21603 * 120.00124 * 352.91693 * 18 17 16 20 20 C 1.47826 * 119.99690 * 172.92267 * 18 17 16 21 21 C 1.39627 * 120.14998 * 331.41718 * 20 18 17 22 22 C 1.37944 * 119.84890 * 179.78936 * 21 20 18 23 23 C 1.38375 * 120.14892 * 0.46696 * 22 21 20 24 24 C 1.38372 * 120.30080 * 359.78631 * 23 22 21 25 25 C 1.37939 * 120.15174 * 359.97438 * 24 23 22 26 26 C 1.38388 * 107.03688 * 359.56730 * 17 16 15 27 27 N 1.34223 * 108.37346 * 0.26976 * 26 17 16 28 28 H 0.96999 * 125.38375 * 180.02562 * 27 26 17 29 29 C 1.47069 * 87.88570 * 27.33943 * 12 11 9 30 30 H 0.96996 * 120.00246 * 0.02562 * 1 2 3 31 31 H 0.96706 * 113.99755 * 46.93286 * 10 9 7 32 32 H 1.09001 * 113.46800 * 105.36575 * 11 9 7 33 33 H 1.08998 * 113.51560 * 334.93579 * 11 9 7 34 34 H 1.08005 * 126.49251 * 0.02562 * 16 15 13 35 35 H 1.07997 * 120.07836 * 0.02562 * 21 20 18 36 36 H 1.07996 * 119.92771 * 180.25184 * 22 21 20 37 37 H 1.08001 * 119.84938 * 179.76428 * 23 22 21 38 38 H 1.08004 * 119.92663 * 179.97438 * 24 23 22 39 39 H 1.08006 * 120.07833 * 179.97438 * 25 24 23 40 40 H 1.08000 * 125.81584 * 180.22509 * 26 17 16 41 41 H 1.09002 * 113.46772 * 87.43625 * 29 12 11 42 42 H 1.09000 * 113.47278 * 217.87594 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 8 0.1922 -2.5400 0.9591 11 6 2.1490 -3.7441 0.0005 12 7 1.2075 -4.3593 -0.9471 13 6 0.8321 -5.6139 -1.2657 14 8 1.3305 -6.5628 -0.6899 15 6 -0.1776 -5.8356 -2.3085 16 6 -0.6478 -7.0474 -2.7191 17 6 -1.5977 -6.7993 -3.7363 18 6 -2.3674 -7.8104 -4.4811 19 8 -2.1216 -8.9921 -4.3334 20 6 -3.4387 -7.3885 -5.4082 21 6 -4.1342 -6.1991 -5.1816 22 6 -5.1298 -5.8092 -6.0531 23 6 -5.4464 -6.5986 -7.1446 24 6 -4.7648 -7.7811 -7.3722 25 6 -3.7636 -8.1805 -6.5114 26 6 -1.6721 -5.4266 -3.8956 27 7 -0.8163 -4.8538 -3.0348 28 1 -0.6707 -3.8997 -2.9387 29 6 0.8606 -3.0033 -1.3985 30 1 -0.4850 0.8400 -0.0004 31 1 -0.3715 -1.7542 0.9562 32 1 2.1880 -4.2512 0.9646 33 1 3.1377 -3.5674 -0.4229 34 1 -0.3494 -8.0140 -2.3406 35 1 -3.8906 -5.5839 -4.3281 36 1 -5.6657 -4.8875 -5.8813 37 1 -6.2294 -6.2906 -7.8218 38 1 -5.0171 -8.3928 -8.2258 39 1 -3.2326 -9.1039 -6.6900 40 1 -2.3096 -4.9051 -4.5942 41 1 1.5094 -2.6304 -2.1910 42 1 -0.1981 -2.8792 -1.6264 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433915621.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:23 Heat of formation + Delta-G solvation = -1.203369 kcal Electronic energy + Delta-G solvation = -28090.114237 eV Core-core repulsion = 24002.742527 eV Total energy + Delta-G solvation = -4087.371710 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.58678 -39.89062 -39.32100 -38.05443 -37.36386 -34.21721 -32.35437 -32.28545 -31.26007 -31.07137 -29.90060 -28.35759 -25.73120 -25.48780 -24.69584 -22.94531 -22.30538 -21.79222 -20.15486 -19.75019 -18.96820 -17.85814 -17.33564 -17.07574 -16.00313 -15.93846 -15.46710 -15.41433 -15.23561 -14.95438 -14.66876 -14.40064 -14.22270 -14.13254 -13.71390 -13.64958 -13.47958 -13.07728 -12.81084 -12.76716 -12.57436 -12.41099 -12.10791 -11.84457 -11.71010 -11.36160 -11.19641 -11.16540 -10.63563 -10.44220 -9.98239 -9.85703 -9.42563 -9.28659 -9.24124 -9.12531 -8.93346 -8.63016 -8.41158 -8.00553 -6.55889 -4.66750 0.49745 1.06397 1.50395 1.79364 2.99958 3.06181 3.07384 3.12822 3.14743 3.30794 3.59284 3.73815 3.97700 4.06027 4.55512 4.64260 4.65212 4.72461 4.79377 4.84610 4.98879 5.09625 5.14968 5.30652 5.38886 5.53359 5.63783 5.67874 5.81778 5.94324 6.00056 6.05316 6.12716 6.13843 6.19483 6.20325 6.34315 6.42095 6.57826 6.59139 6.77014 6.92400 7.21389 7.47740 7.59389 7.63290 8.24763 8.37755 8.55345 9.05413 9.32251 10.50747 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015375 B = 0.002553 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.643678 B =10963.756012 C =12400.584302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.074 0.926 9 C 0.246 3.754 10 O -0.569 6.569 11 C 0.110 3.890 12 N -0.636 5.636 13 C 0.606 3.394 14 O -0.545 6.545 15 C -0.037 4.037 16 C -0.059 4.059 17 C -0.262 4.262 18 C 0.468 3.532 19 O -0.460 6.460 20 C -0.146 4.146 21 C -0.088 4.088 22 C -0.129 4.129 23 C -0.099 4.099 24 C -0.129 4.129 25 C -0.069 4.069 26 C 0.072 3.928 27 N -0.517 5.517 28 H 0.425 0.575 29 C 0.061 3.939 30 H 0.276 0.724 31 H 0.394 0.606 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.156 0.844 35 H 0.136 0.864 36 H 0.129 0.871 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.131 0.869 40 H 0.185 0.815 41 H 0.087 0.913 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.657 -5.279 -14.304 18.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.130 4.130 3 Si 0.737 3.263 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.573 4.573 8 H 0.092 0.908 9 C 0.203 3.797 10 O -0.382 6.382 11 C -0.012 4.012 12 N -0.369 5.369 13 C 0.396 3.604 14 O -0.424 6.424 15 C -0.148 4.148 16 C -0.083 4.083 17 C -0.270 4.270 18 C 0.348 3.652 19 O -0.336 6.336 20 C -0.146 4.146 21 C -0.106 4.106 22 C -0.147 4.147 23 C -0.117 4.117 24 C -0.147 4.147 25 C -0.087 4.087 26 C -0.071 4.071 27 N -0.114 5.114 28 H 0.268 0.732 29 C -0.063 4.063 30 H 0.086 0.914 31 H 0.251 0.749 32 H 0.089 0.911 33 H 0.107 0.893 34 H 0.174 0.826 35 H 0.154 0.846 36 H 0.147 0.853 37 H 0.143 0.857 38 H 0.145 0.855 39 H 0.149 0.851 40 H 0.201 0.799 41 H 0.105 0.895 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.142 -6.895 -13.736 17.882 hybrid contribution 0.030 2.050 -0.350 2.080 sum -9.112 -4.844 -14.085 17.461 Atomic orbital electron populations 1.69237 1.06237 1.28516 1.49985 1.25088 0.95060 1.00047 0.92809 0.86332 0.79487 0.81303 0.79129 1.19835 1.20928 1.19696 1.21392 0.94011 0.89578 1.52302 0.90776 1.19529 0.85411 0.91207 0.83507 1.86078 1.45105 1.48401 1.58590 1.23361 0.93676 0.91839 0.92348 1.49648 1.42685 1.04236 1.40358 1.16517 0.81143 0.81495 0.81278 1.90798 1.57147 1.40687 1.53760 1.20297 1.03998 0.88501 1.02032 1.21095 0.94945 0.97010 0.95280 1.19992 1.07713 0.92812 1.06511 1.19592 0.79939 0.87487 0.78178 1.90607 1.63974 1.19448 1.59584 1.20477 0.99447 0.96699 0.98026 1.21614 0.95066 0.94753 0.99193 1.21187 0.98009 1.00377 0.95116 1.21382 0.98772 0.94433 0.97109 1.21156 0.96534 0.97168 0.99871 1.21336 0.95953 0.98406 0.93046 1.22820 0.95407 0.93210 0.95684 1.42391 1.30421 1.10222 1.28334 0.73200 1.24443 0.99282 0.78596 1.03966 0.91394 0.74898 0.91077 0.89339 0.82591 0.84628 0.85329 0.85709 0.85494 0.85096 0.79855 0.89540 0.92402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -21.14 11.01 55.43 0.61 -20.53 16 2 C 0.07 1.68 5.39 -17.82 -0.10 1.59 16 3 Si 0.91 18.27 29.54 -169.99 -5.02 13.25 16 4 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 7 C -0.53 -12.46 8.70 -34.45 -0.30 -12.76 16 8 H 0.07 1.68 7.81 -52.49 -0.41 1.27 16 9 C 0.25 5.48 1.58 -91.12 -0.14 5.33 16 10 O -0.57 -13.88 13.55 -35.23 -0.48 -14.36 16 11 C 0.11 2.27 8.02 -8.50 -0.07 2.20 16 12 N -0.64 -12.77 3.69 -186.53 -0.69 -13.46 16 13 C 0.61 12.42 8.04 -12.79 -0.10 12.32 16 14 O -0.55 -12.73 17.63 5.22 0.09 -12.64 16 15 C -0.04 -0.63 6.96 -82.39 -0.57 -1.20 16 16 C -0.06 -0.97 10.38 -39.08 -0.41 -1.38 16 17 C -0.26 -3.66 5.98 -104.97 -0.63 -4.29 16 18 C 0.47 6.46 6.94 -31.98 -0.22 6.24 16 19 O -0.46 -7.64 17.26 5.28 0.09 -7.55 16 20 C -0.15 -1.60 5.74 -104.94 -0.60 -2.20 16 21 C -0.09 -0.78 8.20 -39.17 -0.32 -1.10 16 22 C -0.13 -0.95 10.03 -39.64 -0.40 -1.35 16 23 C -0.10 -0.69 10.04 -39.48 -0.40 -1.09 16 24 C -0.13 -1.00 10.03 -39.64 -0.40 -1.40 16 25 C -0.07 -0.68 9.60 -39.17 -0.38 -1.06 16 26 C 0.07 0.82 10.14 -16.45 -0.17 0.65 16 27 N -0.52 -7.00 5.83 -9.26 -0.05 -7.05 16 28 H 0.43 5.34 5.78 -40.82 -0.24 5.10 16 29 C 0.06 1.16 6.74 -8.36 -0.06 1.10 16 30 H 0.28 6.19 8.31 -40.82 -0.34 5.86 16 31 H 0.39 9.68 6.32 45.56 0.29 9.97 16 32 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 33 H 0.09 1.65 8.10 -51.93 -0.42 1.23 16 34 H 0.16 2.64 8.06 -52.48 -0.42 2.22 16 35 H 0.14 1.05 5.56 -52.49 -0.29 0.76 16 36 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 37 H 0.12 0.58 8.06 -52.49 -0.42 0.15 16 38 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 39 H 0.13 1.25 7.90 -52.48 -0.41 0.84 16 40 H 0.18 1.39 5.84 -52.49 -0.31 1.08 16 41 H 0.09 1.54 8.10 -51.93 -0.42 1.12 16 42 H 0.06 1.04 6.37 -51.93 -0.33 0.71 16 LS Contribution 362.81 15.07 5.47 5.47 Total: -1.00 -29.76 362.81 -9.02 -38.78 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: -3.79 Total: 16.48 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: -5.25 Total: 1.60 kcal Atomic # 7 Polarization: -40.90 SS G_CDS: -0.13 Total: -41.04 kcal Atomic # 8 Polarization: -34.26 SS G_CDS: -0.29 Total: -34.55 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -5.02 Total: 13.25 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.76 -9.02 -38.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433915621.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.581 kcal (2) G-P(sol) polarization free energy of solvation -29.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds