Wall clock time and date at job start Sat Apr 11 2020 05:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99523 * 2 1 4 4 H 1.48503 * 109.46711 * 239.99857 * 3 2 1 5 5 H 1.48499 * 109.47202 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47021 * 120.00311 * 3 2 1 7 7 C 1.37873 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00100 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00188 * 0.02562 * 7 2 1 10 10 O 1.42904 * 113.28252 * 313.06506 * 9 7 2 11 11 C 1.53498 * 114.21005 * 179.97438 * 9 7 2 12 12 N 1.47065 * 87.98781 * 220.14627 * 11 9 7 13 13 C 1.34777 * 136.05910 * 207.08854 * 12 11 9 14 14 O 1.21670 * 119.99810 * 359.97438 * 13 12 11 15 15 C 1.46830 * 119.99820 * 180.02562 * 13 12 11 16 16 C 1.36312 * 125.82843 * 180.34427 * 15 13 12 17 17 C 1.41376 * 107.01116 * 180.15296 * 16 15 13 18 18 C 1.47288 * 126.47878 * 179.83725 * 17 16 15 19 19 O 1.21603 * 120.00124 * 352.91693 * 18 17 16 20 20 C 1.47826 * 119.99690 * 172.92267 * 18 17 16 21 21 C 1.39627 * 120.14998 * 331.41718 * 20 18 17 22 22 C 1.37944 * 119.84890 * 179.78936 * 21 20 18 23 23 C 1.38375 * 120.14892 * 0.46696 * 22 21 20 24 24 C 1.38372 * 120.30080 * 359.78631 * 23 22 21 25 25 C 1.37939 * 120.15174 * 359.97438 * 24 23 22 26 26 C 1.38388 * 107.03688 * 359.56730 * 17 16 15 27 27 N 1.34223 * 108.37346 * 0.26976 * 26 17 16 28 28 H 0.96999 * 125.38375 * 180.02562 * 27 26 17 29 29 C 1.47069 * 87.88570 * 27.33943 * 12 11 9 30 30 H 0.96996 * 120.00246 * 0.02562 * 1 2 3 31 31 H 0.96706 * 113.99755 * 46.93286 * 10 9 7 32 32 H 1.09001 * 113.46800 * 105.36575 * 11 9 7 33 33 H 1.08998 * 113.51560 * 334.93579 * 11 9 7 34 34 H 1.08005 * 126.49251 * 0.02562 * 16 15 13 35 35 H 1.07997 * 120.07836 * 0.02562 * 21 20 18 36 36 H 1.07996 * 119.92771 * 180.25184 * 22 21 20 37 37 H 1.08001 * 119.84938 * 179.76428 * 23 22 21 38 38 H 1.08004 * 119.92663 * 179.97438 * 24 23 22 39 39 H 1.08006 * 120.07833 * 179.97438 * 25 24 23 40 40 H 1.08000 * 125.81584 * 180.22509 * 26 17 16 41 41 H 1.09002 * 113.46772 * 87.43625 * 29 12 11 42 42 H 1.09000 * 113.47278 * 217.87594 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 8 0.1922 -2.5400 0.9591 11 6 2.1490 -3.7441 0.0005 12 7 1.2075 -4.3593 -0.9471 13 6 0.8321 -5.6139 -1.2657 14 8 1.3305 -6.5628 -0.6899 15 6 -0.1776 -5.8356 -2.3085 16 6 -0.6478 -7.0474 -2.7191 17 6 -1.5977 -6.7993 -3.7363 18 6 -2.3674 -7.8104 -4.4811 19 8 -2.1216 -8.9921 -4.3334 20 6 -3.4387 -7.3885 -5.4082 21 6 -4.1342 -6.1991 -5.1816 22 6 -5.1298 -5.8092 -6.0531 23 6 -5.4464 -6.5986 -7.1446 24 6 -4.7648 -7.7811 -7.3722 25 6 -3.7636 -8.1805 -6.5114 26 6 -1.6721 -5.4266 -3.8956 27 7 -0.8163 -4.8538 -3.0348 28 1 -0.6707 -3.8997 -2.9387 29 6 0.8606 -3.0033 -1.3985 30 1 -0.4850 0.8400 -0.0004 31 1 -0.3715 -1.7542 0.9562 32 1 2.1880 -4.2512 0.9646 33 1 3.1377 -3.5674 -0.4229 34 1 -0.3494 -8.0140 -2.3406 35 1 -3.8906 -5.5839 -4.3281 36 1 -5.6657 -4.8875 -5.8813 37 1 -6.2294 -6.2906 -7.8218 38 1 -5.0171 -8.3928 -8.2258 39 1 -3.2326 -9.1039 -6.6900 40 1 -2.3096 -4.9051 -4.5942 41 1 1.5094 -2.6304 -2.1910 42 1 -0.1981 -2.8792 -1.6264 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433915621.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:23 Heat of formation + Delta-G solvation = -20.700916 kcal Electronic energy + Delta-G solvation = -28090.959714 eV Core-core repulsion = 24002.742527 eV Total energy + Delta-G solvation = -4088.217187 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.78881 -41.18527 -40.46669 -39.05256 -38.94309 -35.99418 -34.14938 -33.23435 -32.12324 -31.87614 -31.30140 -29.75554 -27.34097 -27.06776 -25.69447 -23.88107 -23.29520 -22.79191 -21.50885 -21.16524 -20.10019 -19.49469 -18.64799 -18.19043 -17.43517 -17.08799 -16.71843 -16.69447 -16.37751 -16.26100 -16.00864 -15.86943 -15.29518 -15.02689 -14.96930 -14.81997 -14.50552 -14.42294 -14.27532 -14.10115 -13.78207 -13.56063 -13.43346 -13.40746 -12.83693 -12.78264 -12.51609 -12.24186 -12.22985 -11.95421 -11.64407 -11.14942 -10.89765 -10.69349 -10.37246 -10.31749 -9.90956 -9.89380 -9.83168 -9.42920 -8.30161 -6.46645 -0.30625 0.30277 0.46195 0.72872 1.48585 1.52095 1.58052 1.71739 1.91285 2.01992 2.27282 2.39897 2.90309 2.91819 3.00674 3.40353 3.69840 3.77885 3.88875 3.98247 3.99948 4.08482 4.19465 4.27587 4.38915 4.49736 4.53504 4.54343 4.63424 4.69641 4.75762 4.77347 4.84501 4.98406 5.11689 5.17093 5.31233 5.44104 5.50641 5.54948 5.56537 5.70894 5.87082 6.01168 6.14938 6.57011 6.58853 6.66934 6.94860 7.27134 7.46189 8.75876 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015375 B = 0.002553 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.643678 B =10963.756012 C =12400.584302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.037 3.963 3 Si 0.968 3.032 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.278 1.278 7 C -0.552 4.552 8 H 0.075 0.925 9 C 0.225 3.775 10 O -0.585 6.585 11 C 0.106 3.894 12 N -0.637 5.637 13 C 0.600 3.400 14 O -0.587 6.587 15 C -0.063 4.063 16 C -0.067 4.067 17 C -0.280 4.280 18 C 0.470 3.530 19 O -0.504 6.504 20 C -0.168 4.168 21 C -0.090 4.090 22 C -0.126 4.126 23 C -0.092 4.092 24 C -0.130 4.130 25 C -0.085 4.085 26 C 0.120 3.880 27 N -0.509 5.509 28 H 0.433 0.567 29 C 0.077 3.923 30 H 0.278 0.722 31 H 0.391 0.609 32 H 0.054 0.946 33 H 0.108 0.892 34 H 0.138 0.862 35 H 0.147 0.853 36 H 0.157 0.843 37 H 0.155 0.845 38 H 0.149 0.851 39 H 0.121 0.879 40 H 0.234 0.766 41 H 0.105 0.895 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.663 -2.946 -17.034 20.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.164 4.164 3 Si 0.793 3.207 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.204 1.204 7 C -0.590 4.590 8 H 0.093 0.907 9 C 0.184 3.816 10 O -0.399 6.399 11 C -0.016 4.016 12 N -0.369 5.369 13 C 0.392 3.608 14 O -0.469 6.469 15 C -0.174 4.174 16 C -0.092 4.092 17 C -0.287 4.287 18 C 0.353 3.647 19 O -0.384 6.384 20 C -0.169 4.169 21 C -0.108 4.108 22 C -0.144 4.144 23 C -0.110 4.110 24 C -0.148 4.148 25 C -0.104 4.104 26 C -0.024 4.024 27 N -0.106 5.106 28 H 0.277 0.723 29 C -0.046 4.046 30 H 0.088 0.912 31 H 0.247 0.753 32 H 0.073 0.927 33 H 0.126 0.874 34 H 0.156 0.844 35 H 0.164 0.836 36 H 0.175 0.825 37 H 0.173 0.827 38 H 0.167 0.833 39 H 0.139 0.861 40 H 0.250 0.750 41 H 0.123 0.877 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.145 -4.531 -16.475 20.400 hybrid contribution 0.551 1.306 0.454 1.489 sum -10.594 -3.225 -16.021 19.476 Atomic orbital electron populations 1.69285 1.06978 1.29146 1.50040 1.25698 0.95770 1.02436 0.92495 0.85442 0.78285 0.78066 0.78863 1.19125 1.20796 1.20365 1.21585 0.94235 0.90261 1.52917 0.90689 1.19778 0.85424 0.91546 0.84901 1.86068 1.45685 1.48268 1.59838 1.23434 0.94679 0.91274 0.92217 1.49658 1.42495 1.04581 1.40152 1.16967 0.81346 0.80941 0.81514 1.90758 1.58826 1.41793 1.55545 1.19749 1.05056 0.89583 1.02984 1.21132 0.95657 0.96352 0.96081 1.20128 1.07810 0.94359 1.06452 1.19978 0.80099 0.86722 0.77930 1.90584 1.65547 1.21024 1.61239 1.20298 0.99831 0.98453 0.98282 1.21745 0.95318 0.93918 0.99859 1.21551 0.97182 1.01267 0.94412 1.21813 0.98550 0.93499 0.97105 1.21439 0.95582 0.97856 0.99924 1.21419 0.96995 0.98295 0.93649 1.23494 0.93061 0.92146 0.93738 1.42308 1.30244 1.10007 1.28059 0.72325 1.24292 1.00477 0.77346 1.02492 0.91194 0.75316 0.92723 0.87388 0.84404 0.83560 0.82496 0.82699 0.83339 0.86117 0.75046 0.87704 0.91149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -42.03 11.01 21.45 0.24 -41.80 16 2 C 0.04 1.67 5.39 84.65 0.46 2.13 16 3 Si 0.97 36.46 29.54 68.60 2.03 38.49 16 4 H -0.27 -9.69 7.11 99.48 0.71 -8.99 16 5 H -0.28 -10.51 7.11 99.48 0.71 -9.80 16 6 H -0.28 -10.69 7.11 99.48 0.71 -9.98 16 7 C -0.55 -25.35 8.70 25.60 0.22 -25.13 16 8 H 0.07 3.34 7.81 -2.91 -0.02 3.32 16 9 C 0.23 10.00 1.58 -11.12 -0.02 9.98 16 10 O -0.59 -28.88 13.55 -148.98 -2.02 -30.90 16 11 C 0.11 4.44 8.02 83.18 0.67 5.11 16 12 N -0.64 -25.68 3.69 -862.77 -3.18 -28.86 16 13 C 0.60 25.27 8.04 86.49 0.70 25.97 16 14 O -0.59 -28.80 17.63 -4.25 -0.08 -28.87 16 15 C -0.06 -2.17 6.96 40.00 0.28 -1.90 16 16 C -0.07 -2.28 10.38 22.59 0.23 -2.05 16 17 C -0.28 -7.68 5.98 -20.09 -0.12 -7.80 16 18 C 0.47 13.08 6.94 27.19 0.19 13.26 16 19 O -0.50 -17.71 17.26 -4.04 -0.07 -17.78 16 20 C -0.17 -3.46 5.74 -20.07 -0.12 -3.58 16 21 C -0.09 -1.30 8.20 22.54 0.18 -1.12 16 22 C -0.13 -1.28 10.03 22.23 0.22 -1.06 16 23 C -0.09 -0.88 10.04 22.33 0.22 -0.66 16 24 C -0.13 -1.64 10.03 22.23 0.22 -1.41 16 25 C -0.09 -1.59 9.60 22.54 0.22 -1.38 16 26 C 0.12 2.40 10.14 84.36 0.86 3.25 16 27 N -0.51 -12.79 5.83 -183.22 -1.07 -13.86 16 28 H 0.43 9.70 5.78 -92.71 -0.54 9.17 16 29 C 0.08 2.84 6.74 83.27 0.56 3.40 16 30 H 0.28 12.16 8.31 -92.71 -0.77 11.39 16 31 H 0.39 19.32 6.32 -74.05 -0.47 18.86 16 32 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.11 4.03 8.10 -2.39 -0.02 4.01 16 34 H 0.14 5.11 8.06 -2.91 -0.02 5.09 16 35 H 0.15 1.67 5.56 -2.91 -0.02 1.65 16 36 H 0.16 0.73 8.06 -2.91 -0.02 0.71 16 37 H 0.16 0.58 8.06 -2.91 -0.02 0.55 16 38 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16 39 H 0.12 2.39 7.90 -2.91 -0.02 2.37 16 40 H 0.23 2.33 5.84 -2.91 -0.02 2.31 16 41 H 0.11 3.51 8.10 -2.39 -0.02 3.49 16 42 H 0.07 2.42 6.37 -2.39 -0.02 2.40 16 Total: -1.00 -67.42 362.81 0.93 -66.49 By element: Atomic # 1 Polarization: 39.96 SS G_CDS: 0.10 Total: 40.06 kcal Atomic # 6 Polarization: 12.04 SS G_CDS: 4.98 Total: 17.02 kcal Atomic # 7 Polarization: -80.50 SS G_CDS: -4.01 Total: -84.51 kcal Atomic # 8 Polarization: -75.38 SS G_CDS: -2.16 Total: -77.54 kcal Atomic # 14 Polarization: 36.46 SS G_CDS: 2.03 Total: 38.49 kcal Total: -67.42 0.93 -66.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433915621.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.789 kcal (2) G-P(sol) polarization free energy of solvation -67.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds